data_1Z3Z
#
_model_server_result.job_id            eyv0ruhN1wG8wR0QFh70bg 
_model_server_result.datetime_utc      '2024-10-11 08:30:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z3z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":434}' 
#
_entry.id    1Z3Z 
#
_exptl.entry_id    1Z3Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1Z3Z 
_cell.length_a            150.04 
_cell.length_b            150.04 
_cell.length_c            84.42 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z3Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 270 A LYS 272 1_555 D C4A PLP . A PLP 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
metalc ? metalc1 A O LEU 76 A LEU 78 1_555 C K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc2 A N SER 78 A SER 80 1_555 C K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.629 ? 
metalc ? metalc3 A OG SER 78 A SER 80 1_555 C K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc4 A O ALA 93 A ALA 95 1_555 B NA NA . A NA 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc5 A O THR 96 A THR 98 1_555 B NA NA . A NA 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc6 A O PRO 97 A PRO 99 1_555 B NA NA . A NA 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc7 A O LEU 100 A LEU 102 1_555 B NA NA . A NA 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc8 A O THR 301 A THR 303 1_555 C K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc9 A O VAL 303 A VAL 305 1_555 C K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc10 A OD1 ASP 305 A ASP 307 1_555 C K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
_atom_sites.entry_id                     1Z3Z 
_atom_sites.fract_transf_matrix[1][1]    0.006665 
_atom_sites.fract_transf_matrix[1][2]    0.003848 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007696 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 436 436 NA NA . 
C 3 K A 1 500 500 K K . 
D 4 PLP A 1 434 434 PLP PLP . 
E 5 MES A 1 435 435 MES MES . 
F 6 HOH A 1 437 437 HOH WAT . 
F 6 HOH A 2 438 438 HOH WAT . 
F 6 HOH A 3 439 439 HOH WAT . 
F 6 HOH A 4 440 440 HOH WAT . 
F 6 HOH A 5 441 441 HOH WAT . 
F 6 HOH A 6 442 442 HOH WAT . 
F 6 HOH A 7 443 443 HOH WAT . 
F 6 HOH A 8 444 444 HOH WAT . 
F 6 HOH A 9 445 445 HOH WAT . 
F 6 HOH A 10 446 446 HOH WAT . 
F 6 HOH A 11 447 447 HOH WAT . 
F 6 HOH A 12 448 448 HOH WAT . 
F 6 HOH A 13 449 449 HOH WAT . 
F 6 HOH A 14 450 450 HOH WAT . 
F 6 HOH A 15 451 451 HOH WAT . 
F 6 HOH A 16 452 452 HOH WAT . 
F 6 HOH A 17 453 453 HOH WAT . 
F 6 HOH A 18 454 454 HOH WAT . 
F 6 HOH A 19 455 455 HOH WAT . 
F 6 HOH A 20 456 456 HOH WAT . 
F 6 HOH A 21 457 457 HOH WAT . 
F 6 HOH A 22 458 458 HOH WAT . 
F 6 HOH A 23 459 459 HOH WAT . 
F 6 HOH A 24 460 460 HOH WAT . 
F 6 HOH A 25 461 461 HOH WAT . 
F 6 HOH A 26 462 462 HOH WAT . 
F 6 HOH A 27 463 463 HOH WAT . 
F 6 HOH A 28 464 464 HOH WAT . 
F 6 HOH A 29 465 465 HOH WAT . 
F 6 HOH A 30 466 466 HOH WAT . 
F 6 HOH A 31 467 467 HOH WAT . 
F 6 HOH A 32 468 468 HOH WAT . 
F 6 HOH A 33 469 469 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 4 17.184 52.314 13.419 1 36.75 ? N1 PLP 434 A 1 
HETATM 2 C C2 PLP . . . D 4 15.982 52.617 14.074 1 37.22 ? C2 PLP 434 A 1 
HETATM 3 C C2A PLP . . . D 4 15.036 53.625 13.496 1 36.74 ? C2A PLP 434 A 1 
HETATM 4 C C3 PLP . . . D 4 15.654 51.957 15.292 1 37.37 ? C3 PLP 434 A 1 
HETATM 5 O O3 PLP . . . D 4 14.521 52.345 15.99 1 38.95 ? O3 PLP 434 A 1 
HETATM 6 C C4 PLP . . . D 4 16.51 50.984 15.82 1 37.19 ? C4 PLP 434 A 1 
HETATM 7 C C4A PLP . . . D 4 15.933 49.977 16.762 1 36.19 ? C4A PLP 434 A 1 
HETATM 8 C C5 PLP . . . D 4 17.762 50.724 15.189 1 37.06 ? C5 PLP 434 A 1 
HETATM 9 C C6 PLP . . . D 4 18.073 51.372 13.95 1 36.86 ? C6 PLP 434 A 1 
HETATM 10 C C5A PLP . . . D 4 18.877 49.969 15.926 1 37.36 ? C5A PLP 434 A 1 
HETATM 11 O O4P PLP . . . D 4 18.979 48.615 15.409 1 35.66 ? O4P PLP 434 A 1 
HETATM 12 P P PLP . . . D 4 19.695 47.55 16.188 1 34.61 ? P PLP 434 A 1 
HETATM 13 O O1P PLP . . . D 4 19.159 46.09 15.714 1 33.74 ? O1P PLP 434 A 1 
HETATM 14 O O2P PLP . . . D 4 21.269 47.649 15.901 1 34.31 ? O2P PLP 434 A 1 
HETATM 15 O O3P PLP . . . D 4 19.424 47.751 17.743 1 33.72 ? O3P PLP 434 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#