data_1Z4I # _model_server_result.job_id HoOr0Om6gcDm2rVwhz7xPA _model_server_result.datetime_utc '2024-11-23 04:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 1Z4I # _exptl.entry_id 1Z4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z4I _cell.length_a 73.7 _cell.length_b 73.7 _cell.length_c 106.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 73.7 73.7 53.21 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 10 A ASN 41 1_555 B MG MG . A MG 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 A O ASP 12 A ASP 43 1_555 B MG MG . A MG 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc3 A OD1 ASP 145 A ASP 176 1_555 B MG MG . A MG 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 C OP1 UMP . A UMP 1001 1_555 B MG MG . A MG 1228 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc5 C OP3 UMP . A UMP 1001 1_555 B MG MG . A MG 1228 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 B MG MG . A MG 1228 1_555 D O1 GOL . A GOL 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc7 B MG MG . A MG 1228 1_555 E O HOH . A HOH 2096 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1Z4I _atom_sites.fract_transf_matrix[1][1] 0.013569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1228 228 MG MG . C 3 UMP A 1 1001 1 UMP UMP . D 4 GOL A 1 2001 1 GOL GLC . E 5 HOH A 1 2002 1 HOH HOH . E 5 HOH A 2 2003 2 HOH HOH . E 5 HOH A 3 2004 3 HOH HOH . E 5 HOH A 4 2005 4 HOH HOH . E 5 HOH A 5 2006 5 HOH HOH . E 5 HOH A 6 2007 6 HOH HOH . E 5 HOH A 7 2008 7 HOH HOH . E 5 HOH A 8 2009 8 HOH HOH . E 5 HOH A 9 2010 9 HOH HOH . E 5 HOH A 10 2011 10 HOH HOH . E 5 HOH A 11 2012 11 HOH HOH . E 5 HOH A 12 2013 12 HOH HOH . E 5 HOH A 13 2014 13 HOH HOH . E 5 HOH A 14 2015 14 HOH HOH . E 5 HOH A 15 2016 15 HOH HOH . E 5 HOH A 16 2017 16 HOH HOH . E 5 HOH A 17 2018 17 HOH HOH . E 5 HOH A 18 2019 18 HOH HOH . E 5 HOH A 19 2020 19 HOH HOH . E 5 HOH A 20 2021 20 HOH HOH . E 5 HOH A 21 2022 21 HOH HOH . E 5 HOH A 22 2023 22 HOH HOH . E 5 HOH A 23 2024 23 HOH HOH . E 5 HOH A 24 2025 24 HOH HOH . E 5 HOH A 25 2026 25 HOH HOH . E 5 HOH A 26 2027 27 HOH HOH . E 5 HOH A 27 2028 28 HOH HOH . E 5 HOH A 28 2029 29 HOH HOH . E 5 HOH A 29 2030 30 HOH HOH . E 5 HOH A 30 2031 31 HOH HOH . E 5 HOH A 31 2032 32 HOH HOH . E 5 HOH A 32 2033 33 HOH HOH . E 5 HOH A 33 2034 34 HOH HOH . E 5 HOH A 34 2035 35 HOH HOH . E 5 HOH A 35 2036 36 HOH HOH . E 5 HOH A 36 2037 37 HOH HOH . E 5 HOH A 37 2038 38 HOH HOH . E 5 HOH A 38 2039 39 HOH HOH . E 5 HOH A 39 2040 40 HOH HOH . E 5 HOH A 40 2041 41 HOH HOH . E 5 HOH A 41 2042 42 HOH HOH . E 5 HOH A 42 2043 43 HOH HOH . E 5 HOH A 43 2044 44 HOH HOH . E 5 HOH A 44 2045 45 HOH HOH . E 5 HOH A 45 2046 46 HOH HOH . E 5 HOH A 46 2047 47 HOH HOH . E 5 HOH A 47 2048 48 HOH HOH . E 5 HOH A 48 2049 49 HOH HOH . E 5 HOH A 49 2050 50 HOH HOH . E 5 HOH A 50 2051 51 HOH HOH . E 5 HOH A 51 2052 52 HOH HOH . E 5 HOH A 52 2053 53 HOH HOH . E 5 HOH A 53 2054 54 HOH HOH . E 5 HOH A 54 2055 56 HOH HOH . E 5 HOH A 55 2056 57 HOH HOH . E 5 HOH A 56 2057 58 HOH HOH . E 5 HOH A 57 2058 59 HOH HOH . E 5 HOH A 58 2059 60 HOH HOH . E 5 HOH A 59 2060 61 HOH HOH . E 5 HOH A 60 2061 62 HOH HOH . E 5 HOH A 61 2062 63 HOH HOH . E 5 HOH A 62 2063 64 HOH HOH . E 5 HOH A 63 2064 65 HOH HOH . E 5 HOH A 64 2065 66 HOH HOH . E 5 HOH A 65 2066 67 HOH HOH . E 5 HOH A 66 2067 68 HOH HOH . E 5 HOH A 67 2068 69 HOH HOH . E 5 HOH A 68 2069 70 HOH HOH . E 5 HOH A 69 2070 71 HOH HOH . E 5 HOH A 70 2071 72 HOH HOH . E 5 HOH A 71 2072 73 HOH HOH . E 5 HOH A 72 2073 74 HOH HOH . E 5 HOH A 73 2074 75 HOH HOH . E 5 HOH A 74 2075 76 HOH HOH . E 5 HOH A 75 2076 77 HOH HOH . E 5 HOH A 76 2077 78 HOH HOH . E 5 HOH A 77 2078 79 HOH HOH . E 5 HOH A 78 2079 80 HOH HOH . E 5 HOH A 79 2080 81 HOH HOH . E 5 HOH A 80 2081 82 HOH HOH . E 5 HOH A 81 2082 83 HOH HOH . E 5 HOH A 82 2083 84 HOH HOH . E 5 HOH A 83 2084 85 HOH HOH . E 5 HOH A 84 2085 86 HOH HOH . E 5 HOH A 85 2086 87 HOH HOH . E 5 HOH A 86 2087 88 HOH HOH . E 5 HOH A 87 2088 89 HOH HOH . E 5 HOH A 88 2089 90 HOH HOH . E 5 HOH A 89 2090 91 HOH HOH . E 5 HOH A 90 2091 92 HOH HOH . E 5 HOH A 91 2092 93 HOH HOH . E 5 HOH A 92 2093 94 HOH HOH . E 5 HOH A 93 2094 95 HOH HOH . E 5 HOH A 94 2095 96 HOH HOH . E 5 HOH A 95 2096 98 HOH HOH . E 5 HOH A 96 2097 99 HOH HOH . E 5 HOH A 97 2098 100 HOH HOH . E 5 HOH A 98 2099 101 HOH HOH . E 5 HOH A 99 2100 102 HOH HOH . E 5 HOH A 100 2101 103 HOH HOH . E 5 HOH A 101 2102 104 HOH HOH . E 5 HOH A 102 2103 105 HOH HOH . E 5 HOH A 103 2104 106 HOH HOH . E 5 HOH A 104 2105 107 HOH HOH . E 5 HOH A 105 2106 108 HOH HOH . E 5 HOH A 106 2107 109 HOH HOH . E 5 HOH A 107 2108 110 HOH HOH . E 5 HOH A 108 2109 111 HOH HOH . E 5 HOH A 109 2110 112 HOH HOH . E 5 HOH A 110 2111 113 HOH HOH . E 5 HOH A 111 2112 114 HOH HOH . E 5 HOH A 112 2113 115 HOH HOH . E 5 HOH A 113 2114 116 HOH HOH . E 5 HOH A 114 2115 117 HOH HOH . E 5 HOH A 115 2116 118 HOH HOH . E 5 HOH A 116 2117 120 HOH HOH . E 5 HOH A 117 2118 121 HOH HOH . E 5 HOH A 118 2119 122 HOH HOH . E 5 HOH A 119 2120 123 HOH HOH . E 5 HOH A 120 2121 124 HOH HOH . E 5 HOH A 121 2122 125 HOH HOH . E 5 HOH A 122 2123 126 HOH HOH . E 5 HOH A 123 2124 127 HOH HOH . E 5 HOH A 124 2125 129 HOH HOH . E 5 HOH A 125 2126 130 HOH HOH . E 5 HOH A 126 2127 131 HOH HOH . E 5 HOH A 127 2128 133 HOH HOH . E 5 HOH A 128 2129 134 HOH HOH . E 5 HOH A 129 2130 135 HOH HOH . E 5 HOH A 130 2131 136 HOH HOH . E 5 HOH A 131 2132 137 HOH HOH . E 5 HOH A 132 2133 138 HOH HOH . E 5 HOH A 133 2134 139 HOH HOH . E 5 HOH A 134 2135 141 HOH HOH . E 5 HOH A 135 2136 142 HOH HOH . E 5 HOH A 136 2137 144 HOH HOH . E 5 HOH A 137 2138 145 HOH HOH . E 5 HOH A 138 2139 146 HOH HOH . E 5 HOH A 139 2140 147 HOH HOH . E 5 HOH A 140 2141 148 HOH HOH . E 5 HOH A 141 2142 149 HOH HOH . E 5 HOH A 142 2143 150 HOH HOH . E 5 HOH A 143 2144 151 HOH HOH . E 5 HOH A 144 2145 152 HOH HOH . E 5 HOH A 145 2146 153 HOH HOH . E 5 HOH A 146 2147 154 HOH HOH . E 5 HOH A 147 2148 155 HOH HOH . E 5 HOH A 148 2149 156 HOH HOH . E 5 HOH A 149 2150 157 HOH HOH . E 5 HOH A 150 2151 158 HOH HOH . E 5 HOH A 151 2152 159 HOH HOH . E 5 HOH A 152 2153 160 HOH HOH . E 5 HOH A 153 2154 161 HOH HOH . E 5 HOH A 154 2155 162 HOH HOH . E 5 HOH A 155 2156 163 HOH HOH . E 5 HOH A 156 2157 164 HOH HOH . E 5 HOH A 157 2158 165 HOH HOH . E 5 HOH A 158 2159 166 HOH HOH . E 5 HOH A 159 2160 167 HOH HOH . E 5 HOH A 160 2161 168 HOH HOH . E 5 HOH A 161 2162 169 HOH HOH . E 5 HOH A 162 2163 170 HOH HOH . E 5 HOH A 163 2164 171 HOH HOH . E 5 HOH A 164 2165 172 HOH HOH . E 5 HOH A 165 2166 173 HOH HOH . E 5 HOH A 166 2167 174 HOH HOH . E 5 HOH A 167 2168 175 HOH HOH . E 5 HOH A 168 2169 176 HOH HOH . E 5 HOH A 169 2170 177 HOH HOH . E 5 HOH A 170 2171 178 HOH HOH . E 5 HOH A 171 2172 179 HOH HOH . E 5 HOH A 172 2173 180 HOH HOH . E 5 HOH A 173 2174 181 HOH HOH . E 5 HOH A 174 2175 182 HOH HOH . E 5 HOH A 175 2176 183 HOH HOH . E 5 HOH A 176 2177 184 HOH HOH . E 5 HOH A 177 2178 185 HOH HOH . E 5 HOH A 178 2179 186 HOH HOH . E 5 HOH A 179 2180 187 HOH HOH . E 5 HOH A 180 2181 188 HOH HOH . E 5 HOH A 181 2182 189 HOH HOH . E 5 HOH A 182 2183 190 HOH HOH . E 5 HOH A 183 2184 191 HOH HOH . E 5 HOH A 184 2185 192 HOH HOH . E 5 HOH A 185 2186 193 HOH HOH . E 5 HOH A 186 2187 194 HOH HOH . E 5 HOH A 187 2188 195 HOH HOH . E 5 HOH A 188 2189 196 HOH HOH . E 5 HOH A 189 2190 197 HOH HOH . E 5 HOH A 190 2191 198 HOH HOH . E 5 HOH A 191 2192 199 HOH HOH . E 5 HOH A 192 2193 200 HOH HOH . E 5 HOH A 193 2194 201 HOH HOH . E 5 HOH A 194 2195 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 12.786 38.915 31.253 1 35.84 ? C1 GOL 2001 A 1 HETATM 2 O O1 GOL . . . D 4 13.847 38.034 31.291 1 23 ? O1 GOL 2001 A 1 HETATM 3 C C2 GOL . . . D 4 11.786 38.457 30.216 1 35.38 ? C2 GOL 2001 A 1 HETATM 4 O O2 GOL . . . D 4 11.076 39.575 29.866 1 36.7 ? O2 GOL 2001 A 1 HETATM 5 C C3 GOL . . . D 4 10.796 37.408 30.794 1 39.13 ? C3 GOL 2001 A 1 HETATM 6 O O3 GOL . . . D 4 10.131 36.848 29.695 1 37.87 ? O3 GOL 2001 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #