data_1Z4M # _model_server_result.job_id vp1oDUIi91Q3J2qgZylfGg _model_server_result.datetime_utc '2024-11-16 13:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3001}' # _entry.id 1Z4M # _exptl.entry_id 1Z4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z4M _cell.length_a 73.572 _cell.length_b 73.572 _cell.length_c 105.748 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 73.572 73.572 52.874 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 10 A ASN 41 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A O ASP 12 A ASP 43 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 A OD1 ASP 145 A ASP 176 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc4 C O1P U5P . A U5P 1001 1_555 B MG MG . A MG 2001 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc5 C O3P U5P . A U5P 1001 1_555 B MG MG . A MG 2001 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 B MG MG . A MG 2001 1_555 E O HOH . A HOH 3050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc7 B MG MG . A MG 2001 1_555 E O HOH . A HOH 3051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1Z4M _atom_sites.fract_transf_matrix[1][1] 0.013592 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2001 2001 MG MG . C 3 U5P A 1 1001 1001 U5P U5P . D 4 GOL A 1 3001 3001 GOL GOL . E 5 HOH A 1 3002 1 HOH HOH . E 5 HOH A 2 3003 2 HOH HOH . E 5 HOH A 3 3004 3 HOH HOH . E 5 HOH A 4 3005 4 HOH HOH . E 5 HOH A 5 3006 5 HOH HOH . E 5 HOH A 6 3007 6 HOH HOH . E 5 HOH A 7 3008 7 HOH HOH . E 5 HOH A 8 3009 8 HOH HOH . E 5 HOH A 9 3010 9 HOH HOH . E 5 HOH A 10 3011 10 HOH HOH . E 5 HOH A 11 3012 11 HOH HOH . E 5 HOH A 12 3013 12 HOH HOH . E 5 HOH A 13 3014 13 HOH HOH . E 5 HOH A 14 3015 14 HOH HOH . E 5 HOH A 15 3016 15 HOH HOH . E 5 HOH A 16 3017 16 HOH HOH . E 5 HOH A 17 3018 17 HOH HOH . E 5 HOH A 18 3019 18 HOH HOH . E 5 HOH A 19 3020 19 HOH HOH . E 5 HOH A 20 3021 20 HOH HOH . E 5 HOH A 21 3022 21 HOH HOH . E 5 HOH A 22 3023 22 HOH HOH . E 5 HOH A 23 3024 23 HOH HOH . E 5 HOH A 24 3025 24 HOH HOH . E 5 HOH A 25 3026 25 HOH HOH . E 5 HOH A 26 3027 26 HOH HOH . E 5 HOH A 27 3028 27 HOH HOH . E 5 HOH A 28 3029 28 HOH HOH . E 5 HOH A 29 3030 29 HOH HOH . E 5 HOH A 30 3031 30 HOH HOH . E 5 HOH A 31 3032 31 HOH HOH . E 5 HOH A 32 3033 32 HOH HOH . E 5 HOH A 33 3034 33 HOH HOH . E 5 HOH A 34 3035 34 HOH HOH . E 5 HOH A 35 3036 35 HOH HOH . E 5 HOH A 36 3037 36 HOH HOH . E 5 HOH A 37 3038 37 HOH HOH . E 5 HOH A 38 3039 38 HOH HOH . E 5 HOH A 39 3040 39 HOH HOH . E 5 HOH A 40 3041 40 HOH HOH . E 5 HOH A 41 3042 41 HOH HOH . E 5 HOH A 42 3043 42 HOH HOH . E 5 HOH A 43 3044 43 HOH HOH . E 5 HOH A 44 3045 44 HOH HOH . E 5 HOH A 45 3046 45 HOH HOH . E 5 HOH A 46 3047 46 HOH HOH . E 5 HOH A 47 3048 47 HOH HOH . E 5 HOH A 48 3049 48 HOH HOH . E 5 HOH A 49 3050 49 HOH HOH . E 5 HOH A 50 3051 50 HOH HOH . E 5 HOH A 51 3052 51 HOH HOH . E 5 HOH A 52 3053 52 HOH HOH . E 5 HOH A 53 3054 53 HOH HOH . E 5 HOH A 54 3055 54 HOH HOH . E 5 HOH A 55 3056 55 HOH HOH . E 5 HOH A 56 3057 56 HOH HOH . E 5 HOH A 57 3058 57 HOH HOH . E 5 HOH A 58 3059 58 HOH HOH . E 5 HOH A 59 3060 59 HOH HOH . E 5 HOH A 60 3061 60 HOH HOH . E 5 HOH A 61 3062 61 HOH HOH . E 5 HOH A 62 3063 62 HOH HOH . E 5 HOH A 63 3064 63 HOH HOH . E 5 HOH A 64 3065 64 HOH HOH . E 5 HOH A 65 3066 65 HOH HOH . E 5 HOH A 66 3067 66 HOH HOH . E 5 HOH A 67 3068 67 HOH HOH . E 5 HOH A 68 3069 68 HOH HOH . E 5 HOH A 69 3070 69 HOH HOH . E 5 HOH A 70 3071 70 HOH HOH . E 5 HOH A 71 3072 71 HOH HOH . E 5 HOH A 72 3073 72 HOH HOH . E 5 HOH A 73 3074 73 HOH HOH . E 5 HOH A 74 3075 74 HOH HOH . E 5 HOH A 75 3076 75 HOH HOH . E 5 HOH A 76 3077 76 HOH HOH . E 5 HOH A 77 3078 77 HOH HOH . E 5 HOH A 78 3079 78 HOH HOH . E 5 HOH A 79 3080 79 HOH HOH . E 5 HOH A 80 3081 80 HOH HOH . E 5 HOH A 81 3082 81 HOH HOH . E 5 HOH A 82 3083 82 HOH HOH . E 5 HOH A 83 3084 83 HOH HOH . E 5 HOH A 84 3085 84 HOH HOH . E 5 HOH A 85 3086 85 HOH HOH . E 5 HOH A 86 3087 86 HOH HOH . E 5 HOH A 87 3088 87 HOH HOH . E 5 HOH A 88 3089 88 HOH HOH . E 5 HOH A 89 3090 89 HOH HOH . E 5 HOH A 90 3091 90 HOH HOH . E 5 HOH A 91 3092 91 HOH HOH . E 5 HOH A 92 3093 92 HOH HOH . E 5 HOH A 93 3094 93 HOH HOH . E 5 HOH A 94 3095 94 HOH HOH . E 5 HOH A 95 3096 95 HOH HOH . E 5 HOH A 96 3097 96 HOH HOH . E 5 HOH A 97 3098 97 HOH HOH . E 5 HOH A 98 3099 98 HOH HOH . E 5 HOH A 99 3100 99 HOH HOH . E 5 HOH A 100 3101 100 HOH HOH . E 5 HOH A 101 3102 101 HOH HOH . E 5 HOH A 102 3103 102 HOH HOH . E 5 HOH A 103 3104 103 HOH HOH . E 5 HOH A 104 3105 104 HOH HOH . E 5 HOH A 105 3106 105 HOH HOH . E 5 HOH A 106 3107 106 HOH HOH . E 5 HOH A 107 3108 107 HOH HOH . E 5 HOH A 108 3109 108 HOH HOH . E 5 HOH A 109 3110 109 HOH HOH . E 5 HOH A 110 3111 110 HOH HOH . E 5 HOH A 111 3112 111 HOH HOH . E 5 HOH A 112 3113 112 HOH HOH . E 5 HOH A 113 3114 113 HOH HOH . E 5 HOH A 114 3115 114 HOH HOH . E 5 HOH A 115 3116 115 HOH HOH . E 5 HOH A 116 3117 116 HOH HOH . E 5 HOH A 117 3118 117 HOH HOH . E 5 HOH A 118 3119 118 HOH HOH . E 5 HOH A 119 3120 119 HOH HOH . E 5 HOH A 120 3121 120 HOH HOH . E 5 HOH A 121 3122 121 HOH HOH . E 5 HOH A 122 3123 122 HOH HOH . E 5 HOH A 123 3124 123 HOH HOH . E 5 HOH A 124 3125 124 HOH HOH . E 5 HOH A 125 3126 125 HOH HOH . E 5 HOH A 126 3127 126 HOH HOH . E 5 HOH A 127 3128 127 HOH HOH . E 5 HOH A 128 3129 128 HOH HOH . E 5 HOH A 129 3130 129 HOH HOH . E 5 HOH A 130 3131 130 HOH HOH . E 5 HOH A 131 3132 131 HOH HOH . E 5 HOH A 132 3133 132 HOH HOH . E 5 HOH A 133 3134 133 HOH HOH . E 5 HOH A 134 3135 134 HOH HOH . E 5 HOH A 135 3136 135 HOH HOH . E 5 HOH A 136 3137 136 HOH HOH . E 5 HOH A 137 3138 137 HOH HOH . E 5 HOH A 138 3139 138 HOH HOH . E 5 HOH A 139 3140 139 HOH HOH . E 5 HOH A 140 3141 140 HOH HOH . E 5 HOH A 141 3142 141 HOH HOH . E 5 HOH A 142 3143 142 HOH HOH . E 5 HOH A 143 3144 143 HOH HOH . E 5 HOH A 144 3145 144 HOH HOH . E 5 HOH A 145 3146 145 HOH HOH . E 5 HOH A 146 3147 146 HOH HOH . E 5 HOH A 147 3148 147 HOH HOH . E 5 HOH A 148 3149 148 HOH HOH . E 5 HOH A 149 3150 149 HOH HOH . E 5 HOH A 150 3151 150 HOH HOH . E 5 HOH A 151 3152 151 HOH HOH . E 5 HOH A 152 3153 152 HOH HOH . E 5 HOH A 153 3154 153 HOH HOH . E 5 HOH A 154 3155 154 HOH HOH . E 5 HOH A 155 3156 155 HOH HOH . E 5 HOH A 156 3157 156 HOH HOH . E 5 HOH A 157 3158 157 HOH HOH . E 5 HOH A 158 3159 158 HOH HOH . E 5 HOH A 159 3160 159 HOH HOH . E 5 HOH A 160 3161 160 HOH HOH . E 5 HOH A 161 3162 161 HOH HOH . E 5 HOH A 162 3163 162 HOH HOH . E 5 HOH A 163 3164 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 10.991 43.71 21.737 1 37.6 ? C1 GOL 3001 A 1 HETATM 2 O O1 GOL . . . D 4 11.639 44.036 20.559 1 39.05 ? O1 GOL 3001 A 1 HETATM 3 C C2 GOL . . . D 4 9.582 44.306 21.695 1 37.04 ? C2 GOL 3001 A 1 HETATM 4 O O2 GOL . . . D 4 8.749 43.197 21.509 1 38.74 ? O2 GOL 3001 A 1 HETATM 5 C C3 GOL . . . D 4 9.357 45.356 20.589 1 37.81 ? C3 GOL 3001 A 1 HETATM 6 O O3 GOL . . . D 4 9.789 46.687 20.923 1 25.74 ? O3 GOL 3001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #