data_1Z4W # _model_server_result.job_id 6HJL8Ibp81-oTb8N3qhDew _model_server_result.datetime_utc '2025-07-03 08:52:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 1Z4W # _exptl.entry_id 1Z4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1Z4W _cell.length_a 137.976 _cell.length_b 137.976 _cell.length_c 185.041 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3,4 A,B,C,D,E,F,G 2 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 x-y,x-1,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 68.988 -119.490721 30.840167 3 'crystal symmetry operation' 9_763 -x+2,-x+y+1,-z-4/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 206.964 119.490721 -246.721333 4 'crystal symmetry operation' 11_753 -x+y+2,y,-z-3/2 -1 0 0 0 1 0 0 0 -1 275.952 0 -277.5615 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2 NAG 2 n B NAG 2 B 2 NAG B 3 NAG 2 n C NAG 1 C 1 NAG C 4 NAG 2 n C NAG 2 C 2 NAG C 5 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 161 1_555 A SG CYS 152 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 142 A CYS 175 1_555 A SG CYS 203 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 194 A CYS 227 1_555 A SG CYS 207 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 A SG CYS 332 A CYS 365 1_555 A SG CYS 342 A CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 A SG CYS 415 A CYS 448 1_555 A SG CYS 425 A CYS 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 495 A CYS 528 1_555 A SG CYS 506 A CYS 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 D C1 NAG . A NAG 1 1_555 A ND2 ASN 106 A ASN 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 234 A ASN 267 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 A ND2 ASN 471 A ASN 504 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? metalc ? metalc1 A O ASP 217 A ASP 250 1_555 E CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 A O SER 220 A SER 253 1_555 E CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc3 A OG SER 220 A SER 253 1_555 E CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 A O ALA 222 A ALA 255 1_555 E CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc5 A O ALA 252 A ALA 285 1_555 E CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1Z4W _atom_sites.fract_transf_matrix[1][1] 0.007248 _atom_sites.fract_transf_matrix[1][2] 0.004184 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 1 1 NAG NAG . E 4 CA A 1 600 600 CA CA . F 5 DAN A 1 601 601 DAN DAN . G 6 HOH A 1 602 1 HOH WAT . G 6 HOH A 2 603 2 HOH WAT . G 6 HOH A 3 604 3 HOH WAT . G 6 HOH A 4 605 4 HOH WAT . G 6 HOH A 5 606 5 HOH WAT . G 6 HOH A 6 607 6 HOH WAT . G 6 HOH A 7 608 7 HOH WAT . G 6 HOH A 8 609 8 HOH WAT . G 6 HOH A 9 610 9 HOH WAT . G 6 HOH A 10 611 10 HOH WAT . G 6 HOH A 11 612 11 HOH WAT . G 6 HOH A 12 613 12 HOH WAT . G 6 HOH A 13 614 13 HOH WAT . G 6 HOH A 14 615 14 HOH WAT . G 6 HOH A 15 616 15 HOH WAT . G 6 HOH A 16 617 16 HOH WAT . G 6 HOH A 17 618 17 HOH WAT . G 6 HOH A 18 619 18 HOH WAT . G 6 HOH A 19 620 19 HOH WAT . G 6 HOH A 20 621 20 HOH WAT . G 6 HOH A 21 622 21 HOH WAT . G 6 HOH A 22 623 22 HOH WAT . G 6 HOH A 23 624 23 HOH WAT . G 6 HOH A 24 625 24 HOH WAT . G 6 HOH A 25 626 25 HOH WAT . G 6 HOH A 26 627 26 HOH WAT . G 6 HOH A 27 628 27 HOH WAT . G 6 HOH A 28 629 28 HOH WAT . G 6 HOH A 29 630 29 HOH WAT . G 6 HOH A 30 631 30 HOH WAT . G 6 HOH A 31 632 31 HOH WAT . G 6 HOH A 32 633 32 HOH WAT . G 6 HOH A 33 634 33 HOH WAT . G 6 HOH A 34 635 34 HOH WAT . G 6 HOH A 35 636 35 HOH WAT . G 6 HOH A 36 637 36 HOH WAT . G 6 HOH A 37 638 37 HOH WAT . G 6 HOH A 38 639 38 HOH WAT . G 6 HOH A 39 640 39 HOH WAT . G 6 HOH A 40 641 40 HOH WAT . G 6 HOH A 41 642 41 HOH WAT . G 6 HOH A 42 643 42 HOH WAT . G 6 HOH A 43 644 43 HOH WAT . G 6 HOH A 44 645 44 HOH WAT . G 6 HOH A 45 646 45 HOH WAT . G 6 HOH A 46 647 46 HOH WAT . G 6 HOH A 47 648 47 HOH WAT . G 6 HOH A 48 649 48 HOH WAT . G 6 HOH A 49 650 49 HOH WAT . G 6 HOH A 50 651 50 HOH WAT . G 6 HOH A 51 652 51 HOH WAT . G 6 HOH A 52 653 52 HOH WAT . G 6 HOH A 53 654 53 HOH WAT . G 6 HOH A 54 655 54 HOH WAT . G 6 HOH A 55 656 55 HOH WAT . G 6 HOH A 56 657 56 HOH WAT . G 6 HOH A 57 658 57 HOH WAT . G 6 HOH A 58 659 58 HOH WAT . G 6 HOH A 59 660 59 HOH WAT . G 6 HOH A 60 661 60 HOH WAT . G 6 HOH A 61 662 61 HOH WAT . G 6 HOH A 62 663 62 HOH WAT . G 6 HOH A 63 664 63 HOH WAT . G 6 HOH A 64 665 64 HOH WAT . G 6 HOH A 65 666 65 HOH WAT . G 6 HOH A 66 667 66 HOH WAT . G 6 HOH A 67 668 67 HOH WAT . G 6 HOH A 68 669 68 HOH WAT . G 6 HOH A 69 670 69 HOH WAT . G 6 HOH A 70 671 70 HOH WAT . G 6 HOH A 71 672 71 HOH WAT . G 6 HOH A 72 673 72 HOH WAT . G 6 HOH A 73 674 73 HOH WAT . G 6 HOH A 74 675 74 HOH WAT . G 6 HOH A 75 676 75 HOH WAT . G 6 HOH A 76 677 76 HOH WAT . G 6 HOH A 77 678 77 HOH WAT . G 6 HOH A 78 679 78 HOH WAT . G 6 HOH A 79 680 79 HOH WAT . G 6 HOH A 80 681 80 HOH WAT . G 6 HOH A 81 682 81 HOH WAT . G 6 HOH A 82 683 82 HOH WAT . G 6 HOH A 83 684 83 HOH WAT . G 6 HOH A 84 685 84 HOH WAT . G 6 HOH A 85 686 85 HOH WAT . G 6 HOH A 86 687 86 HOH WAT . G 6 HOH A 87 688 87 HOH WAT . G 6 HOH A 88 689 88 HOH WAT . G 6 HOH A 89 690 89 HOH WAT . G 6 HOH A 90 691 90 HOH WAT . G 6 HOH A 91 692 91 HOH WAT . G 6 HOH A 92 693 92 HOH WAT . G 6 HOH A 93 694 93 HOH WAT . G 6 HOH A 94 695 94 HOH WAT . G 6 HOH A 95 696 95 HOH WAT . G 6 HOH A 96 697 96 HOH WAT . G 6 HOH A 97 698 97 HOH WAT . G 6 HOH A 98 699 98 HOH WAT . G 6 HOH A 99 700 99 HOH WAT . G 6 HOH A 100 701 100 HOH WAT . G 6 HOH A 101 702 101 HOH WAT . G 6 HOH A 102 703 102 HOH WAT . G 6 HOH A 103 704 103 HOH WAT . G 6 HOH A 104 705 104 HOH WAT . G 6 HOH A 105 706 105 HOH WAT . G 6 HOH A 106 707 106 HOH WAT . G 6 HOH A 107 708 107 HOH WAT . G 6 HOH A 108 709 108 HOH WAT . G 6 HOH A 109 710 109 HOH WAT . G 6 HOH A 110 711 110 HOH WAT . G 6 HOH A 111 712 111 HOH WAT . G 6 HOH A 112 713 112 HOH WAT . G 6 HOH A 113 714 113 HOH WAT . G 6 HOH A 114 715 114 HOH WAT . G 6 HOH A 115 716 115 HOH WAT . G 6 HOH A 116 717 116 HOH WAT . G 6 HOH A 117 718 117 HOH WAT . G 6 HOH A 118 719 118 HOH WAT . G 6 HOH A 119 720 119 HOH WAT . G 6 HOH A 120 721 120 HOH WAT . G 6 HOH A 121 722 121 HOH WAT . G 6 HOH A 122 723 122 HOH WAT . G 6 HOH A 123 724 123 HOH WAT . G 6 HOH A 124 725 124 HOH WAT . G 6 HOH A 125 726 125 HOH WAT . G 6 HOH A 126 727 126 HOH WAT . G 6 HOH A 127 728 127 HOH WAT . G 6 HOH A 128 729 128 HOH WAT . G 6 HOH A 129 730 129 HOH WAT . G 6 HOH A 130 731 130 HOH WAT . G 6 HOH A 131 732 131 HOH WAT . G 6 HOH A 132 733 132 HOH WAT . G 6 HOH A 133 734 133 HOH WAT . G 6 HOH A 134 735 134 HOH WAT . G 6 HOH A 135 736 135 HOH WAT . G 6 HOH A 136 737 136 HOH WAT . G 6 HOH A 137 738 137 HOH WAT . G 6 HOH A 138 739 138 HOH WAT . G 6 HOH A 139 740 139 HOH WAT . G 6 HOH A 140 741 140 HOH WAT . G 6 HOH A 141 742 141 HOH WAT . G 6 HOH A 142 743 142 HOH WAT . G 6 HOH A 143 744 143 HOH WAT . G 6 HOH A 144 745 144 HOH WAT . G 6 HOH A 145 746 145 HOH WAT . G 6 HOH A 146 747 146 HOH WAT . G 6 HOH A 147 748 147 HOH WAT . G 6 HOH A 148 749 148 HOH WAT . G 6 HOH A 149 750 149 HOH WAT . G 6 HOH A 150 751 150 HOH WAT . G 6 HOH A 151 752 151 HOH WAT . G 6 HOH A 152 753 152 HOH WAT . G 6 HOH A 153 754 153 HOH WAT . G 6 HOH A 154 755 154 HOH WAT . G 6 HOH A 155 756 155 HOH WAT . G 6 HOH A 156 757 156 HOH WAT . G 6 HOH A 157 758 157 HOH WAT . G 6 HOH A 158 759 158 HOH WAT . G 6 HOH A 159 760 159 HOH WAT . G 6 HOH A 160 761 160 HOH WAT . G 6 HOH A 161 762 161 HOH WAT . G 6 HOH A 162 763 162 HOH WAT . G 6 HOH A 163 764 163 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 143.07 _atom_site.Cartn_y -36.973 _atom_site.Cartn_z -173.963 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 600 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #