data_1Z5M
#
_model_server_result.job_id            AIMp438J5QUiGLmLISCSSg 
_model_server_result.datetime_utc      '2025-02-05 04:04:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z5m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":602}' 
#
_entry.id    1Z5M 
#
_exptl.entry_id    1Z5M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1Z5M 
_cell.length_a            124.61 
_cell.length_b            124.61 
_cell.length_c            46.97 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z5M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            SEP 
_struct_conn.ptnr1_label_seq_id             168 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SEP 
_struct_conn.ptnr1_auth_seq_id              241 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            PHE 
_struct_conn.ptnr2_label_seq_id             169 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PHE 
_struct_conn.ptnr2_auth_seq_id              242 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.327 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1Z5M 
_atom_sites.fract_transf_matrix[1][1]    0.008025 
_atom_sites.fract_transf_matrix[1][2]    0.004633 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009267 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02129 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 600 600 SO4 SO4 . 
C 3 CL A 1 698 698 CL CL . 
D 4 LI8 A 1 501 501 LI8 320 . 
E 5 GOL A 1 602 602 GOL GOL . 
F 5 GOL A 1 606 606 GOL GOL . 
G 5 GOL A 1 607 607 GOL GOL . 
H 6 HOH A 1 701 701 HOH HOH . 
H 6 HOH A 2 702 702 HOH HOH . 
H 6 HOH A 3 703 703 HOH HOH . 
H 6 HOH A 4 704 704 HOH HOH . 
H 6 HOH A 5 705 705 HOH HOH . 
H 6 HOH A 6 706 706 HOH HOH . 
H 6 HOH A 7 707 707 HOH HOH . 
H 6 HOH A 8 708 708 HOH HOH . 
H 6 HOH A 9 709 709 HOH HOH . 
H 6 HOH A 10 710 710 HOH HOH . 
H 6 HOH A 11 711 711 HOH HOH . 
H 6 HOH A 12 712 712 HOH HOH . 
H 6 HOH A 13 713 713 HOH HOH . 
H 6 HOH A 14 714 714 HOH HOH . 
H 6 HOH A 15 715 715 HOH HOH . 
H 6 HOH A 16 716 716 HOH HOH . 
H 6 HOH A 17 717 717 HOH HOH . 
H 6 HOH A 18 718 718 HOH HOH . 
H 6 HOH A 19 719 719 HOH HOH . 
H 6 HOH A 20 720 720 HOH HOH . 
H 6 HOH A 21 721 721 HOH HOH . 
H 6 HOH A 22 722 722 HOH HOH . 
H 6 HOH A 23 723 723 HOH HOH . 
H 6 HOH A 24 724 724 HOH HOH . 
H 6 HOH A 25 725 725 HOH HOH . 
H 6 HOH A 26 726 726 HOH HOH . 
H 6 HOH A 27 727 727 HOH HOH . 
H 6 HOH A 28 728 728 HOH HOH . 
H 6 HOH A 29 729 729 HOH HOH . 
H 6 HOH A 30 730 730 HOH HOH . 
H 6 HOH A 31 731 731 HOH HOH . 
H 6 HOH A 32 732 732 HOH HOH . 
H 6 HOH A 33 733 733 HOH HOH . 
H 6 HOH A 34 734 734 HOH HOH . 
H 6 HOH A 35 735 735 HOH HOH . 
H 6 HOH A 36 736 736 HOH HOH . 
H 6 HOH A 37 737 737 HOH HOH . 
H 6 HOH A 38 738 738 HOH HOH . 
H 6 HOH A 39 739 739 HOH HOH . 
H 6 HOH A 40 740 740 HOH HOH . 
H 6 HOH A 41 741 741 HOH HOH . 
H 6 HOH A 42 742 742 HOH HOH . 
H 6 HOH A 43 743 743 HOH HOH . 
H 6 HOH A 44 744 744 HOH HOH . 
H 6 HOH A 45 745 745 HOH HOH . 
H 6 HOH A 46 746 746 HOH HOH . 
H 6 HOH A 47 747 747 HOH HOH . 
H 6 HOH A 48 748 748 HOH HOH . 
H 6 HOH A 49 749 749 HOH HOH . 
H 6 HOH A 50 750 750 HOH HOH . 
H 6 HOH A 51 751 751 HOH HOH . 
H 6 HOH A 52 752 752 HOH HOH . 
H 6 HOH A 53 753 753 HOH HOH . 
H 6 HOH A 54 754 754 HOH HOH . 
H 6 HOH A 55 755 755 HOH HOH . 
H 6 HOH A 56 756 756 HOH HOH . 
H 6 HOH A 57 757 757 HOH HOH . 
H 6 HOH A 58 758 758 HOH HOH . 
H 6 HOH A 59 759 759 HOH HOH . 
H 6 HOH A 60 760 760 HOH HOH . 
H 6 HOH A 61 761 761 HOH HOH . 
H 6 HOH A 62 762 762 HOH HOH . 
H 6 HOH A 63 763 763 HOH HOH . 
H 6 HOH A 64 764 764 HOH HOH . 
H 6 HOH A 65 765 765 HOH HOH . 
H 6 HOH A 66 766 766 HOH HOH . 
H 6 HOH A 67 767 767 HOH HOH . 
H 6 HOH A 68 768 768 HOH HOH . 
H 6 HOH A 69 769 769 HOH HOH . 
H 6 HOH A 70 770 770 HOH HOH . 
H 6 HOH A 71 771 771 HOH HOH . 
H 6 HOH A 72 772 772 HOH HOH . 
H 6 HOH A 73 773 773 HOH HOH . 
H 6 HOH A 74 774 774 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 -13.237 43.116 60.405 1 23.62 ? C1 GOL 602 A 1 
HETATM 2 O O1 GOL . . . E 5 -14.602 43.381 60.23 1 22.82 ? O1 GOL 602 A 1 
HETATM 3 C C2 GOL . . . E 5 -13.064 42.125 61.539 1 31.01 ? C2 GOL 602 A 1 
HETATM 4 O O2 GOL . . . E 5 -12.752 42.867 62.703 1 32.08 ? O2 GOL 602 A 1 
HETATM 5 C C3 GOL . . . E 5 -11.951 41.063 61.257 1 32.5 ? C3 GOL 602 A 1 
HETATM 6 O O3 GOL . . . E 5 -11.948 40.03 62.274 1 40.78 ? O3 GOL 602 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#