data_1Z5P
#
_model_server_result.job_id            D4BGLssraA1l5F1MDADYeA 
_model_server_result.datetime_utc      '2024-11-26 04:41:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z5p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    1Z5P 
#
_exptl.entry_id    1Z5P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Z5P 
_cell.length_a            70.01 
_cell.length_b            127.52 
_cell.length_c            69.59 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z5P 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        21 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 70.01 0 69.59 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1Z5P 
_atom_sites.fract_transf_matrix[1][1]    0.014284 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007842 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01437 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PE5 A 1 401 401 PE5 PE5 . 
C 2 PE5 A 1 402 402 PE5 PE5 . 
D 3 GOL A 1 403 403 GOL GOL . 
E 4 IPA A 1 404 404 IPA IOH . 
F 5 HOH A 1 405 1 HOH HOH . 
F 5 HOH A 2 406 2 HOH HOH . 
F 5 HOH A 3 407 3 HOH HOH . 
F 5 HOH A 4 408 4 HOH HOH . 
F 5 HOH A 5 409 5 HOH HOH . 
F 5 HOH A 6 410 6 HOH HOH . 
F 5 HOH A 7 411 7 HOH HOH . 
F 5 HOH A 8 412 8 HOH HOH . 
F 5 HOH A 9 413 9 HOH HOH . 
F 5 HOH A 10 414 10 HOH HOH . 
F 5 HOH A 11 415 11 HOH HOH . 
F 5 HOH A 12 416 12 HOH HOH . 
F 5 HOH A 13 417 13 HOH HOH . 
F 5 HOH A 14 418 14 HOH HOH . 
F 5 HOH A 15 419 15 HOH HOH . 
F 5 HOH A 16 420 16 HOH HOH . 
F 5 HOH A 17 421 17 HOH HOH . 
F 5 HOH A 18 422 18 HOH HOH . 
F 5 HOH A 19 423 19 HOH HOH . 
F 5 HOH A 20 424 20 HOH HOH . 
F 5 HOH A 21 425 21 HOH HOH . 
F 5 HOH A 22 426 22 HOH HOH . 
F 5 HOH A 23 427 23 HOH HOH . 
F 5 HOH A 24 428 24 HOH HOH . 
F 5 HOH A 25 429 25 HOH HOH . 
F 5 HOH A 26 430 26 HOH HOH . 
F 5 HOH A 27 431 27 HOH HOH . 
F 5 HOH A 28 432 28 HOH HOH . 
F 5 HOH A 29 433 29 HOH HOH . 
F 5 HOH A 30 434 30 HOH HOH . 
F 5 HOH A 31 435 31 HOH HOH . 
F 5 HOH A 32 436 32 HOH HOH . 
F 5 HOH A 33 437 33 HOH HOH . 
F 5 HOH A 34 438 34 HOH HOH . 
F 5 HOH A 35 439 35 HOH HOH . 
F 5 HOH A 36 440 36 HOH HOH . 
F 5 HOH A 37 441 37 HOH HOH . 
F 5 HOH A 38 442 38 HOH HOH . 
F 5 HOH A 39 443 39 HOH HOH . 
F 5 HOH A 40 444 40 HOH HOH . 
F 5 HOH A 41 445 41 HOH HOH . 
F 5 HOH A 42 446 42 HOH HOH . 
F 5 HOH A 43 447 43 HOH HOH . 
F 5 HOH A 44 448 44 HOH HOH . 
F 5 HOH A 45 449 45 HOH HOH . 
F 5 HOH A 46 450 46 HOH HOH . 
F 5 HOH A 47 451 47 HOH HOH . 
F 5 HOH A 48 452 48 HOH HOH . 
F 5 HOH A 49 453 49 HOH HOH . 
F 5 HOH A 50 454 50 HOH HOH . 
F 5 HOH A 51 455 51 HOH HOH . 
F 5 HOH A 52 456 52 HOH HOH . 
F 5 HOH A 53 457 53 HOH HOH . 
F 5 HOH A 54 458 54 HOH HOH . 
F 5 HOH A 55 459 55 HOH HOH . 
F 5 HOH A 56 460 56 HOH HOH . 
F 5 HOH A 57 461 57 HOH HOH . 
F 5 HOH A 58 462 58 HOH HOH . 
F 5 HOH A 59 463 59 HOH HOH . 
F 5 HOH A 60 464 60 HOH HOH . 
F 5 HOH A 61 465 61 HOH HOH . 
F 5 HOH A 62 466 62 HOH HOH . 
F 5 HOH A 63 467 63 HOH HOH . 
F 5 HOH A 64 468 64 HOH HOH . 
F 5 HOH A 65 469 65 HOH HOH . 
F 5 HOH A 66 470 66 HOH HOH . 
F 5 HOH A 67 471 67 HOH HOH . 
F 5 HOH A 68 472 68 HOH HOH . 
F 5 HOH A 69 473 69 HOH HOH . 
F 5 HOH A 70 474 70 HOH HOH . 
F 5 HOH A 71 475 71 HOH HOH . 
F 5 HOH A 72 476 72 HOH HOH . 
F 5 HOH A 73 477 73 HOH HOH . 
F 5 HOH A 74 478 74 HOH HOH . 
F 5 HOH A 75 479 75 HOH HOH . 
F 5 HOH A 76 480 76 HOH HOH . 
F 5 HOH A 77 481 77 HOH HOH . 
F 5 HOH A 78 482 78 HOH HOH . 
F 5 HOH A 79 483 79 HOH HOH . 
F 5 HOH A 80 484 80 HOH HOH . 
F 5 HOH A 81 485 81 HOH HOH . 
F 5 HOH A 82 486 82 HOH HOH . 
F 5 HOH A 83 487 83 HOH HOH . 
F 5 HOH A 84 488 84 HOH HOH . 
F 5 HOH A 85 489 85 HOH HOH . 
F 5 HOH A 86 490 86 HOH HOH . 
F 5 HOH A 87 491 87 HOH HOH . 
F 5 HOH A 88 492 88 HOH HOH . 
F 5 HOH A 89 493 89 HOH HOH . 
F 5 HOH A 90 494 90 HOH HOH . 
F 5 HOH A 91 495 91 HOH HOH . 
F 5 HOH A 92 496 92 HOH HOH . 
F 5 HOH A 93 497 93 HOH HOH . 
F 5 HOH A 94 498 94 HOH HOH . 
F 5 HOH A 95 499 95 HOH HOH . 
F 5 HOH A 96 500 96 HOH HOH . 
F 5 HOH A 97 501 97 HOH HOH . 
F 5 HOH A 98 502 98 HOH HOH . 
F 5 HOH A 99 503 99 HOH HOH . 
F 5 HOH A 100 504 100 HOH HOH . 
F 5 HOH A 101 505 101 HOH HOH . 
F 5 HOH A 102 506 102 HOH HOH . 
F 5 HOH A 103 507 103 HOH HOH . 
F 5 HOH A 104 508 104 HOH HOH . 
F 5 HOH A 105 509 105 HOH HOH . 
F 5 HOH A 106 510 106 HOH HOH . 
F 5 HOH A 107 511 107 HOH HOH . 
F 5 HOH A 108 512 108 HOH HOH . 
F 5 HOH A 109 513 109 HOH HOH . 
F 5 HOH A 110 514 110 HOH HOH . 
F 5 HOH A 111 515 111 HOH HOH . 
F 5 HOH A 112 516 112 HOH HOH . 
F 5 HOH A 113 517 113 HOH HOH . 
F 5 HOH A 114 518 114 HOH HOH . 
F 5 HOH A 115 519 115 HOH HOH . 
F 5 HOH A 116 520 116 HOH HOH . 
F 5 HOH A 117 521 117 HOH HOH . 
F 5 HOH A 118 522 118 HOH HOH . 
F 5 HOH A 119 523 119 HOH HOH . 
F 5 HOH A 120 524 120 HOH HOH . 
F 5 HOH A 121 525 121 HOH HOH . 
F 5 HOH A 122 526 122 HOH HOH . 
F 5 HOH A 123 527 123 HOH HOH . 
F 5 HOH A 124 528 124 HOH HOH . 
F 5 HOH A 125 529 125 HOH HOH . 
F 5 HOH A 126 530 126 HOH HOH . 
F 5 HOH A 127 531 127 HOH HOH . 
F 5 HOH A 128 532 128 HOH HOH . 
F 5 HOH A 129 533 129 HOH HOH . 
F 5 HOH A 130 534 130 HOH HOH . 
F 5 HOH A 131 535 131 HOH HOH . 
F 5 HOH A 132 536 132 HOH HOH . 
F 5 HOH A 133 537 133 HOH HOH . 
F 5 HOH A 134 538 134 HOH HOH . 
F 5 HOH A 135 539 135 HOH HOH . 
F 5 HOH A 136 540 136 HOH HOH . 
F 5 HOH A 137 541 137 HOH HOH . 
F 5 HOH A 138 542 138 HOH HOH . 
F 5 HOH A 139 543 139 HOH HOH . 
F 5 HOH A 140 544 140 HOH HOH . 
F 5 HOH A 141 545 141 HOH HOH . 
F 5 HOH A 142 546 142 HOH HOH . 
F 5 HOH A 143 547 143 HOH HOH . 
F 5 HOH A 144 548 144 HOH HOH . 
F 5 HOH A 145 549 145 HOH HOH . 
F 5 HOH A 146 550 146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 28.817 29.88 23.015 1 41.54 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 3 28.332 28.831 24.151 1 35.41 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 3 30.12 30.329 22.725 1 44.71 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 3 31.032 29.573 23.275 1 33.96 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 3 30.074 31.301 22.054 1 44.87 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 3 30.33 32.748 22.544 1 42.61 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#