data_1Z5W # _model_server_result.job_id asRDTlCBKH-371okZyj1Kw _model_server_result.datetime_utc '2025-08-01 04:38:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2466}' # _entry.id 1Z5W # _exptl.entry_id 1Z5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.31 _cell.angle_gamma 90 _cell.entry_id 1Z5W _cell.length_a 52.19 _cell.length_b 76.29 _cell.length_c 64.81 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 475 1_555 C O1G GTP . A GTP 2466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? metalc ? metalc2 B MG MG . A MG 475 1_555 C O2G GTP . A GTP 2466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc3 B MG MG . A MG 475 1_555 C O2B GTP . A GTP 2466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 1Z5W _atom_sites.fract_transf_matrix[1][1] 0.019161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004181 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 475 29 MG MG2 . C 3 GTP A 1 2466 2466 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 8.776 -13.002 14.1 1 56.68 ? PG GTP 2466 A 1 HETATM 2 O O1G GTP . . . C 3 8.869 -14.453 13.88 1 55.5 ? O1G GTP 2466 A 1 HETATM 3 O O2G GTP . . . C 3 7.936 -12.622 15.34 1 57.85 ? O2G GTP 2466 A 1 HETATM 4 O O3G GTP . . . C 3 8.186 -12.382 12.827 1 57.19 ? O3G GTP 2466 A 1 HETATM 5 O O3B GTP . . . C 3 10.256 -12.489 14.253 1 57 ? O3B GTP 2466 A 1 HETATM 6 P PB GTP . . . C 3 10.99 -11.214 14.981 1 55.72 ? PB GTP 2466 A 1 HETATM 7 O O1B GTP . . . C 3 11.983 -12.048 14.292 1 58.81 ? O1B GTP 2466 A 1 HETATM 8 O O2B GTP . . . C 3 10.148 -11.377 16.215 1 53.02 ? O2B GTP 2466 A 1 HETATM 9 O O3A GTP . . . C 3 12.099 -11.539 16.076 1 56.81 ? O3A GTP 2466 A 1 HETATM 10 P PA GTP . . . C 3 13.39 -12.477 16.221 1 57.28 ? PA GTP 2466 A 1 HETATM 11 O O1A GTP . . . C 3 14.106 -12.304 17.499 1 57.96 ? O1A GTP 2466 A 1 HETATM 12 O O2A GTP . . . C 3 13.807 -13.308 15.05 1 57.64 ? O2A GTP 2466 A 1 HETATM 13 O O5' GTP . . . C 3 14.358 -11.352 15.558 1 52.33 ? O5' GTP 2466 A 1 HETATM 14 C C5' GTP . . . C 3 15.596 -11.898 15.076 1 48.65 ? C5' GTP 2466 A 1 HETATM 15 C C4' GTP . . . C 3 16.592 -10.995 14.51 1 47.29 ? C4' GTP 2466 A 1 HETATM 16 O O4' GTP . . . C 3 17.188 -10.374 15.709 1 46.68 ? O4' GTP 2466 A 1 HETATM 17 C C3' GTP . . . C 3 17.808 -11.69 13.867 1 46.93 ? C3' GTP 2466 A 1 HETATM 18 O O3' GTP . . . C 3 18.545 -10.782 12.98 1 49.48 ? O3' GTP 2466 A 1 HETATM 19 C C2' GTP . . . C 3 18.606 -12.153 15.088 1 45.16 ? C2' GTP 2466 A 1 HETATM 20 O O2' GTP . . . C 3 20.005 -12.187 14.725 1 47.27 ? O2' GTP 2466 A 1 HETATM 21 C C1' GTP . . . C 3 18.405 -11.079 16.114 1 42.78 ? C1' GTP 2466 A 1 HETATM 22 N N9 GTP . . . C 3 18.101 -11.458 17.543 1 37 ? N9 GTP 2466 A 1 HETATM 23 C C8 GTP . . . C 3 17.08 -12.292 17.966 1 35.25 ? C8 GTP 2466 A 1 HETATM 24 N N7 GTP . . . C 3 16.99 -12.458 19.234 1 34.87 ? N7 GTP 2466 A 1 HETATM 25 C C5 GTP . . . C 3 18.027 -11.684 19.76 1 35.28 ? C5 GTP 2466 A 1 HETATM 26 C C6 GTP . . . C 3 18.42 -11.469 21.113 1 33.99 ? C6 GTP 2466 A 1 HETATM 27 O O6 GTP . . . C 3 17.926 -11.94 22.164 1 33.91 ? O6 GTP 2466 A 1 HETATM 28 N N1 GTP . . . C 3 19.535 -10.597 21.226 1 32.43 ? N1 GTP 2466 A 1 HETATM 29 C C2 GTP . . . C 3 20.196 -9.997 20.161 1 32.5 ? C2 GTP 2466 A 1 HETATM 30 N N2 GTP . . . C 3 21.217 -9.211 20.531 1 31.68 ? N2 GTP 2466 A 1 HETATM 31 N N3 GTP . . . C 3 19.836 -10.191 18.851 1 33.58 ? N3 GTP 2466 A 1 HETATM 32 C C4 GTP . . . C 3 18.736 -11.042 18.723 1 35.88 ? C4 GTP 2466 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #