data_1Z77 # _model_server_result.job_id uzdiIi8fVKDWqajKcb892g _model_server_result.datetime_utc '2024-12-26 19:07:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2201}' # _entry.id 1Z77 # _exptl.entry_id 1Z77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z77 _cell.length_a 56.043 _cell.length_b 65.684 _cell.length_c 55.694 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 65.684 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TYR 55 A TYR 55 1_555 A N MSE 56 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale3 A C MSE 56 A MSE 56 1_555 A N SER 57 A SER 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 A C LEU 70 A LEU 70 1_555 A N MSE 71 A MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C MSE 71 A MSE 71 1_555 A N LYS 72 A LYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C PHE 81 A PHE 81 1_555 A N MSE 82 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 82 A MSE 82 1_555 A N GLU 83 A GLU 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale8 A C LEU 154 A LEU 154 1_555 A N MSE 155 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale9 A C MSE 155 A MSE 155 1_555 A N TRP 156 A TRP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C ASP 179 A ASP 179 1_555 A N MSE 180 A MSE 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C MSE 180 A MSE 180 1_555 A N ASN 181 A ASN 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C VAL 189 A VAL 189 1_555 A N MSE 190 A MSE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale13 A C MSE 190 A MSE 190 1_555 A N LEU 191 A LEU 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale14 A C GLY 197 A GLY 197 1_555 A N MSE 198 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 A C MSE 198 A MSE 198 1_555 A N THR 199 A THR 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 1Z77 _atom_sites.fract_transf_matrix[1][1] 0.017843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2201 2201 EDO EGL . C 2 EDO A 1 2202 2202 EDO EGL . D 3 HOH A 1 2203 1 HOH HOH . D 3 HOH A 2 2204 2 HOH HOH . D 3 HOH A 3 2205 3 HOH HOH . D 3 HOH A 4 2206 4 HOH HOH . D 3 HOH A 5 2207 5 HOH HOH . D 3 HOH A 6 2208 6 HOH HOH . D 3 HOH A 7 2209 7 HOH HOH . D 3 HOH A 8 2210 8 HOH HOH . D 3 HOH A 9 2211 9 HOH HOH . D 3 HOH A 10 2212 10 HOH HOH . D 3 HOH A 11 2213 11 HOH HOH . D 3 HOH A 12 2214 13 HOH HOH . D 3 HOH A 13 2215 14 HOH HOH . D 3 HOH A 14 2216 15 HOH HOH . D 3 HOH A 15 2217 16 HOH HOH . D 3 HOH A 16 2218 17 HOH HOH . D 3 HOH A 17 2219 18 HOH HOH . D 3 HOH A 18 2220 19 HOH HOH . D 3 HOH A 19 2221 20 HOH HOH . D 3 HOH A 20 2222 21 HOH HOH . D 3 HOH A 21 2223 23 HOH HOH . D 3 HOH A 22 2224 24 HOH HOH . D 3 HOH A 23 2225 25 HOH HOH . D 3 HOH A 24 2226 26 HOH HOH . D 3 HOH A 25 2227 27 HOH HOH . D 3 HOH A 26 2228 28 HOH HOH . D 3 HOH A 27 2229 29 HOH HOH . D 3 HOH A 28 2230 30 HOH HOH . D 3 HOH A 29 2231 32 HOH HOH . D 3 HOH A 30 2232 33 HOH HOH . D 3 HOH A 31 2233 34 HOH HOH . D 3 HOH A 32 2234 35 HOH HOH . D 3 HOH A 33 2235 36 HOH HOH . D 3 HOH A 34 2236 37 HOH HOH . D 3 HOH A 35 2237 39 HOH HOH . D 3 HOH A 36 2238 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 41.171 14.883 23.818 1 44.35 ? C1 EDO 2201 A 1 HETATM 2 O O1 EDO . . . B 2 40.345 14.301 22.792 1 47.57 ? O1 EDO 2201 A 1 HETATM 3 C C2 EDO . . . B 2 40.397 16.021 24.442 1 34.61 ? C2 EDO 2201 A 1 HETATM 4 O O2 EDO . . . B 2 39.039 15.697 24.273 1 40.6 ? O2 EDO 2201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 4 #