data_1Z7E # _model_server_result.job_id u28UT1pn51_Ikbd8UG4hkA _model_server_result.datetime_utc '2024-11-09 07:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1001}' # _entry.id 1Z7E # _exptl.entry_id 1Z7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z7E _cell.length_a 151.689 _cell.length_b 166.227 _cell.length_c 261.992 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z7E _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1Z7E _atom_sites.fract_transf_matrix[1][1] 0.006592 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 1001 1001 ATP ATP . H 3 UGA A 1 1101 1101 UGA UGA . I 2 ATP B 1 1002 1002 ATP ATP . J 3 UGA B 1 1102 1102 UGA UGA . K 2 ATP C 1 1003 1003 ATP ATP . L 3 UGA C 1 1103 1103 UGA UGA . M 2 ATP D 1 1004 1004 ATP ATP . N 3 UGA D 1 1104 1104 UGA UGA . O 2 ATP E 1 1005 1005 ATP ATP . P 3 UGA E 1 1105 1105 UGA UGA . Q 2 ATP F 1 1006 1006 ATP ATP . R 3 UGA F 1 1106 1106 UGA UGA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 2 123.198 -8.13 47.716 1 82.36 ? PG ATP 1001 A 1 HETATM 2 O O1G ATP . . . G 2 123.578 -6.668 47.918 1 82.1 ? O1G ATP 1001 A 1 HETATM 3 O O2G ATP . . . G 2 124.17 -8.965 46.91 1 83.11 ? O2G ATP 1001 A 1 HETATM 4 O O3G ATP . . . G 2 121.72 -8.413 47.472 1 81.34 ? O3G ATP 1001 A 1 HETATM 5 P PB ATP . . . G 2 124.789 -8.959 50.133 1 64.46 ? PB ATP 1001 A 1 HETATM 6 O O1B ATP . . . G 2 125.292 -10.378 49.971 1 64.79 ? O1B ATP 1001 A 1 HETATM 7 O O2B ATP . . . G 2 125.74 -7.798 49.904 1 64.8 ? O2B ATP 1001 A 1 HETATM 8 O O3B ATP . . . G 2 123.467 -8.733 49.211 1 73.4 ? O3B ATP 1001 A 1 HETATM 9 P PA ATP . . . G 2 124.529 -9.398 53.06 1 46.15 ? PA ATP 1001 A 1 HETATM 10 O O1A ATP . . . G 2 123.388 -8.999 53.957 1 49.92 ? O1A ATP 1001 A 1 HETATM 11 O O2A ATP . . . G 2 124.84 -10.851 52.879 1 47.13 ? O2A ATP 1001 A 1 HETATM 12 O O3A ATP . . . G 2 124.163 -8.817 51.608 1 56.48 ? O3A ATP 1001 A 1 HETATM 13 O O5' ATP . . . G 2 125.796 -8.589 53.599 1 44.45 ? O5' ATP 1001 A 1 HETATM 14 C C5' ATP . . . G 2 127.116 -9.13 53.563 1 41.55 ? C5' ATP 1001 A 1 HETATM 15 C C4' ATP . . . G 2 127.686 -9.289 54.97 1 39.58 ? C4' ATP 1001 A 1 HETATM 16 O O4' ATP . . . G 2 128.13 -8.054 55.573 1 38.39 ? O4' ATP 1001 A 1 HETATM 17 C C3' ATP . . . G 2 126.769 -9.887 56.025 1 39.04 ? C3' ATP 1001 A 1 HETATM 18 O O3' ATP . . . G 2 126.87 -11.307 55.992 1 39.65 ? O3' ATP 1001 A 1 HETATM 19 C C2' ATP . . . G 2 127.319 -9.384 57.362 1 37.23 ? C2' ATP 1001 A 1 HETATM 20 O O2' ATP . . . G 2 127.992 -10.37 58.091 1 41.53 ? O2' ATP 1001 A 1 HETATM 21 C C1' ATP . . . G 2 128.339 -8.339 56.934 1 37.27 ? C1' ATP 1001 A 1 HETATM 22 N N9 ATP . . . G 2 128.451 -7.139 57.758 1 35.18 ? N9 ATP 1001 A 1 HETATM 23 C C8 ATP . . . G 2 127.545 -6.16 58.059 1 34.91 ? C8 ATP 1001 A 1 HETATM 24 N N7 ATP . . . G 2 128.01 -5.248 58.883 1 33.97 ? N7 ATP 1001 A 1 HETATM 25 C C5 ATP . . . G 2 129.314 -5.657 59.134 1 32.75 ? C5 ATP 1001 A 1 HETATM 26 C C6 ATP . . . G 2 130.354 -5.113 59.922 1 31.24 ? C6 ATP 1001 A 1 HETATM 27 N N6 ATP . . . G 2 130.239 -3.997 60.637 1 28.43 ? N6 ATP 1001 A 1 HETATM 28 N N1 ATP . . . G 2 131.535 -5.769 59.942 1 31.21 ? N1 ATP 1001 A 1 HETATM 29 C C2 ATP . . . G 2 131.657 -6.884 59.221 1 31.52 ? C2 ATP 1001 A 1 HETATM 30 N N3 ATP . . . G 2 130.76 -7.488 58.444 1 32.75 ? N3 ATP 1001 A 1 HETATM 31 C C4 ATP . . . G 2 129.597 -6.815 58.444 1 33.61 ? C4 ATP 1001 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #