data_1Z7E # _model_server_result.job_id DDdUBbg3I8OKreHXeRNCqA _model_server_result.datetime_utc '2024-11-02 11:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1003}' # _entry.id 1Z7E # _exptl.entry_id 1Z7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z7E _cell.length_a 151.689 _cell.length_b 166.227 _cell.length_c 261.992 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z7E _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1Z7E _atom_sites.fract_transf_matrix[1][1] 0.006592 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 1001 1001 ATP ATP . H 3 UGA A 1 1101 1101 UGA UGA . I 2 ATP B 1 1002 1002 ATP ATP . J 3 UGA B 1 1102 1102 UGA UGA . K 2 ATP C 1 1003 1003 ATP ATP . L 3 UGA C 1 1103 1103 UGA UGA . M 2 ATP D 1 1004 1004 ATP ATP . N 3 UGA D 1 1104 1104 UGA UGA . O 2 ATP E 1 1005 1005 ATP ATP . P 3 UGA E 1 1105 1105 UGA UGA . Q 2 ATP F 1 1006 1006 ATP ATP . R 3 UGA F 1 1106 1106 UGA UGA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 2 139.321 -9.213 94.928 1 82.65 ? PG ATP 1003 C 1 HETATM 2 O O1G ATP . . . K 2 139.253 -7.726 94.6 1 82.17 ? O1G ATP 1003 C 1 HETATM 3 O O2G ATP . . . K 2 138.156 -10.053 94.456 1 82.45 ? O2G ATP 1003 C 1 HETATM 4 O O3G ATP . . . K 2 139.877 -9.568 96.301 1 82.23 ? O3G ATP 1003 C 1 HETATM 5 P PB ATP . . . K 2 140.68 -9.861 92.299 1 66.8 ? PB ATP 1003 C 1 HETATM 6 O O1B ATP . . . K 2 140.327 -11.274 91.875 1 66.73 ? O1B ATP 1003 C 1 HETATM 7 O O2B ATP . . . K 2 139.993 -8.696 91.623 1 67.14 ? O2B ATP 1003 C 1 HETATM 8 O O3B ATP . . . K 2 140.505 -9.716 93.913 1 74.48 ? O3B ATP 1003 C 1 HETATM 9 P PA ATP . . . K 2 143.34 -10.164 91.026 1 52.25 ? PA ATP 1003 C 1 HETATM 10 O O1A ATP . . . K 2 144.694 -9.779 91.552 1 54.04 ? O1A ATP 1003 C 1 HETATM 11 O O2A ATP . . . K 2 143.034 -11.617 90.773 1 52.13 ? O2A ATP 1003 C 1 HETATM 12 O O3A ATP . . . K 2 142.269 -9.654 92.113 1 59.46 ? O3A ATP 1003 C 1 HETATM 13 O O5' ATP . . . K 2 143.13 -9.341 89.673 1 49.18 ? O5' ATP 1003 C 1 HETATM 14 C C5' ATP . . . K 2 142.419 -9.9 88.563 1 45.01 ? C5' ATP 1003 C 1 HETATM 15 C C4' ATP . . . K 2 143.325 -10.04 87.348 1 42.21 ? C4' ATP 1003 C 1 HETATM 16 O O4' ATP . . . K 2 143.572 -8.787 86.674 1 41.71 ? O4' ATP 1003 C 1 HETATM 17 C C3' ATP . . . K 2 144.725 -10.587 87.593 1 41.49 ? C3' ATP 1003 C 1 HETATM 18 O O3' ATP . . . K 2 144.705 -12.006 87.544 1 41.15 ? O3' ATP 1003 C 1 HETATM 19 C C2' ATP . . . K 2 145.563 -10.065 86.42 1 39.99 ? C2' ATP 1003 C 1 HETATM 20 O O2' ATP . . . K 2 145.852 -11.042 85.456 1 42.27 ? O2' ATP 1003 C 1 HETATM 21 C C1' ATP . . . K 2 144.652 -9.012 85.796 1 39.83 ? C1' ATP 1003 C 1 HETATM 22 N N9 ATP . . . K 2 145.277 -7.77 85.349 1 37.33 ? N9 ATP 1003 C 1 HETATM 23 C C8 ATP . . . K 2 145.966 -6.8 86.029 1 35.99 ? C8 ATP 1003 C 1 HETATM 24 N N7 ATP . . . K 2 146.412 -5.835 85.253 1 36.53 ? N7 ATP 1003 C 1 HETATM 25 C C5 ATP . . . K 2 145.983 -6.197 83.979 1 34.35 ? C5 ATP 1003 C 1 HETATM 26 C C6 ATP . . . K 2 146.134 -5.597 82.708 1 32.61 ? C6 ATP 1003 C 1 HETATM 27 N N6 ATP . . . K 2 146.816 -4.474 82.495 1 32.57 ? N6 ATP 1003 C 1 HETATM 28 N N1 ATP . . . K 2 145.561 -6.207 81.65 1 32.08 ? N1 ATP 1003 C 1 HETATM 29 C C2 ATP . . . K 2 144.905 -7.352 81.854 1 33.09 ? C2 ATP 1003 C 1 HETATM 30 N N3 ATP . . . K 2 144.711 -8.025 82.991 1 33.8 ? N3 ATP 1003 C 1 HETATM 31 C C4 ATP . . . K 2 145.278 -7.381 84.027 1 35.3 ? C4 ATP 1003 C 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #