data_1Z7E
#
_model_server_result.job_id            62-xmKZACwrh46jMoiS6cQ 
_model_server_result.datetime_utc      '2024-12-22 06:13:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z7e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1005}' 
#
_entry.id    1Z7E 
#
_exptl.entry_id    1Z7E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Z7E 
_cell.length_a            151.689 
_cell.length_b            166.227 
_cell.length_c            261.992 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z7E 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1Z7E 
_atom_sites.fract_transf_matrix[1][1]    0.006592 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ATP A 1 1001 1001 ATP ATP . 
H 3 UGA A 1 1101 1101 UGA UGA . 
I 2 ATP B 1 1002 1002 ATP ATP . 
J 3 UGA B 1 1102 1102 UGA UGA . 
K 2 ATP C 1 1003 1003 ATP ATP . 
L 3 UGA C 1 1103 1103 UGA UGA . 
M 2 ATP D 1 1004 1004 ATP ATP . 
N 3 UGA D 1 1104 1104 UGA UGA . 
O 2 ATP E 1 1005 1005 ATP ATP . 
P 3 UGA E 1 1105 1105 UGA UGA . 
Q 2 ATP F 1 1006 1006 ATP ATP . 
R 3 UGA F 1 1106 1106 UGA UGA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . O 2 173.277 29.26 63.63 1 83.01 ? PG ATP 1005 E 1 
HETATM 2 O O1G ATP . . . O 2 172.889 27.788 63.502 1 81.97 ? O1G ATP 1005 E 1 
HETATM 3 O O2G ATP . . . O 2 172.907 30.151 62.468 1 83.21 ? O2G ATP 1005 E 1 
HETATM 4 O O3G ATP . . . O 2 174.632 29.546 64.275 1 83.01 ? O3G ATP 1005 E 1 
HETATM 5 P PB ATP . . . O 2 170.605 29.978 64.819 1 63.65 ? PB ATP 1005 E 1 
HETATM 6 O O1B ATP . . . O 2 170.26 31.406 64.493 1 64.69 ? O1B ATP 1005 E 1 
HETATM 7 O O2B ATP . . . O 2 169.934 28.856 64.054 1 64.4 ? O2B ATP 1005 E 1 
HETATM 8 O O3B ATP . . . O 2 172.216 29.781 64.756 1 73.61 ? O3B ATP 1005 E 1 
HETATM 9 P PA ATP . . . O 2 169.249 30.275 67.424 1 50.79 ? PA ATP 1005 E 1 
HETATM 10 O O1A ATP . . . O 2 169.696 29.829 68.792 1 54.63 ? O1A ATP 1005 E 1 
HETATM 11 O O2A ATP . . . O 2 169.04 31.741 67.16 1 50.15 ? O2A ATP 1005 E 1 
HETATM 12 O O3A ATP . . . O 2 170.356 29.757 66.388 1 57.11 ? O3A ATP 1005 E 1 
HETATM 13 O O5' ATP . . . O 2 167.907 29.453 67.146 1 49.33 ? O5' ATP 1005 E 1 
HETATM 14 C C5' ATP . . . O 2 166.829 30.014 66.405 1 45.42 ? C5' ATP 1005 E 1 
HETATM 15 C C4' ATP . . . O 2 165.597 30.167 67.278 1 42.21 ? C4' ATP 1005 E 1 
HETATM 16 O O4' ATP . . . O 2 164.874 28.934 67.455 1 41.13 ? O4' ATP 1005 E 1 
HETATM 17 C C3' ATP . . . O 2 165.812 30.657 68.702 1 41.84 ? C3' ATP 1005 E 1 
HETATM 18 O O3' ATP . . . O 2 165.858 32.084 68.725 1 43.01 ? O3' ATP 1005 E 1 
HETATM 19 C C2' ATP . . . O 2 164.585 30.145 69.478 1 40.14 ? C2' ATP 1005 E 1 
HETATM 20 O O2' ATP . . . O 2 163.625 31.121 69.808 1 43.04 ? O2' ATP 1005 E 1 
HETATM 21 C C1' ATP . . . O 2 163.953 29.163 68.494 1 39.45 ? C1' ATP 1005 E 1 
HETATM 22 N N9 ATP . . . O 2 163.405 27.924 69.038 1 36 ? N9 ATP 1005 E 1 
HETATM 23 C C8 ATP . . . O 2 163.996 26.901 69.729 1 34.7 ? C8 ATP 1005 E 1 
HETATM 24 N N7 ATP . . . O 2 163.158 25.959 70.094 1 33.65 ? N7 ATP 1005 E 1 
HETATM 25 C C5 ATP . . . O 2 161.933 26.395 69.604 1 32.93 ? C5 ATP 1005 E 1 
HETATM 26 C C6 ATP . . . O 2 160.638 25.848 69.656 1 31.37 ? C6 ATP 1005 E 1 
HETATM 27 N N6 ATP . . . O 2 160.344 24.707 70.269 1 31.41 ? N6 ATP 1005 E 1 
HETATM 28 N N1 ATP . . . O 2 159.642 26.527 69.05 1 30.2 ? N1 ATP 1005 E 1 
HETATM 29 C C2 ATP . . . O 2 159.932 27.681 68.45 1 30.61 ? C2 ATP 1005 E 1 
HETATM 30 N N3 ATP . . . O 2 161.102 28.304 68.343 1 31.62 ? N3 ATP 1005 E 1 
HETATM 31 C C4 ATP . . . O 2 162.073 27.597 68.946 1 33.65 ? C4 ATP 1005 E 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#