data_1Z7E # _model_server_result.job_id Mr4bei65t_sh4FnOkEhZLw _model_server_result.datetime_utc '2024-11-09 08:22:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1005}' # _entry.id 1Z7E # _exptl.entry_id 1Z7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z7E _cell.length_a 151.689 _cell.length_b 166.227 _cell.length_c 261.992 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z7E _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1Z7E _atom_sites.fract_transf_matrix[1][1] 0.006592 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 1001 1001 ATP ATP . H 3 UGA A 1 1101 1101 UGA UGA . I 2 ATP B 1 1002 1002 ATP ATP . J 3 UGA B 1 1102 1102 UGA UGA . K 2 ATP C 1 1003 1003 ATP ATP . L 3 UGA C 1 1103 1103 UGA UGA . M 2 ATP D 1 1004 1004 ATP ATP . N 3 UGA D 1 1104 1104 UGA UGA . O 2 ATP E 1 1005 1005 ATP ATP . P 3 UGA E 1 1105 1105 UGA UGA . Q 2 ATP F 1 1006 1006 ATP ATP . R 3 UGA F 1 1106 1106 UGA UGA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 2 173.277 29.26 63.63 1 83.01 ? PG ATP 1005 E 1 HETATM 2 O O1G ATP . . . O 2 172.889 27.788 63.502 1 81.97 ? O1G ATP 1005 E 1 HETATM 3 O O2G ATP . . . O 2 172.907 30.151 62.468 1 83.21 ? O2G ATP 1005 E 1 HETATM 4 O O3G ATP . . . O 2 174.632 29.546 64.275 1 83.01 ? O3G ATP 1005 E 1 HETATM 5 P PB ATP . . . O 2 170.605 29.978 64.819 1 63.65 ? PB ATP 1005 E 1 HETATM 6 O O1B ATP . . . O 2 170.26 31.406 64.493 1 64.69 ? O1B ATP 1005 E 1 HETATM 7 O O2B ATP . . . O 2 169.934 28.856 64.054 1 64.4 ? O2B ATP 1005 E 1 HETATM 8 O O3B ATP . . . O 2 172.216 29.781 64.756 1 73.61 ? O3B ATP 1005 E 1 HETATM 9 P PA ATP . . . O 2 169.249 30.275 67.424 1 50.79 ? PA ATP 1005 E 1 HETATM 10 O O1A ATP . . . O 2 169.696 29.829 68.792 1 54.63 ? O1A ATP 1005 E 1 HETATM 11 O O2A ATP . . . O 2 169.04 31.741 67.16 1 50.15 ? O2A ATP 1005 E 1 HETATM 12 O O3A ATP . . . O 2 170.356 29.757 66.388 1 57.11 ? O3A ATP 1005 E 1 HETATM 13 O O5' ATP . . . O 2 167.907 29.453 67.146 1 49.33 ? O5' ATP 1005 E 1 HETATM 14 C C5' ATP . . . O 2 166.829 30.014 66.405 1 45.42 ? C5' ATP 1005 E 1 HETATM 15 C C4' ATP . . . O 2 165.597 30.167 67.278 1 42.21 ? C4' ATP 1005 E 1 HETATM 16 O O4' ATP . . . O 2 164.874 28.934 67.455 1 41.13 ? O4' ATP 1005 E 1 HETATM 17 C C3' ATP . . . O 2 165.812 30.657 68.702 1 41.84 ? C3' ATP 1005 E 1 HETATM 18 O O3' ATP . . . O 2 165.858 32.084 68.725 1 43.01 ? O3' ATP 1005 E 1 HETATM 19 C C2' ATP . . . O 2 164.585 30.145 69.478 1 40.14 ? C2' ATP 1005 E 1 HETATM 20 O O2' ATP . . . O 2 163.625 31.121 69.808 1 43.04 ? O2' ATP 1005 E 1 HETATM 21 C C1' ATP . . . O 2 163.953 29.163 68.494 1 39.45 ? C1' ATP 1005 E 1 HETATM 22 N N9 ATP . . . O 2 163.405 27.924 69.038 1 36 ? N9 ATP 1005 E 1 HETATM 23 C C8 ATP . . . O 2 163.996 26.901 69.729 1 34.7 ? C8 ATP 1005 E 1 HETATM 24 N N7 ATP . . . O 2 163.158 25.959 70.094 1 33.65 ? N7 ATP 1005 E 1 HETATM 25 C C5 ATP . . . O 2 161.933 26.395 69.604 1 32.93 ? C5 ATP 1005 E 1 HETATM 26 C C6 ATP . . . O 2 160.638 25.848 69.656 1 31.37 ? C6 ATP 1005 E 1 HETATM 27 N N6 ATP . . . O 2 160.344 24.707 70.269 1 31.41 ? N6 ATP 1005 E 1 HETATM 28 N N1 ATP . . . O 2 159.642 26.527 69.05 1 30.2 ? N1 ATP 1005 E 1 HETATM 29 C C2 ATP . . . O 2 159.932 27.681 68.45 1 30.61 ? C2 ATP 1005 E 1 HETATM 30 N N3 ATP . . . O 2 161.102 28.304 68.343 1 31.62 ? N3 ATP 1005 E 1 HETATM 31 C C4 ATP . . . O 2 162.073 27.597 68.946 1 33.65 ? C4 ATP 1005 E 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #