data_1Z7E
#
_model_server_result.job_id            CpzmcYJ5Dtqiq4hPAHuq_A 
_model_server_result.datetime_utc      '2025-07-16 03:56:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z7e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1104}' 
#
_entry.id    1Z7E 
#
_exptl.entry_id    1Z7E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              580.285 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Z7E 
_cell.length_a            151.689 
_cell.length_b            166.227 
_cell.length_c            261.992 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z7E 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C15 H22 N2 O18 P2' 
_chem_comp.formula_weight    580.285 
_chem_comp.id                UGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'UDP-GLUCURONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1' C2' UGA sing 405 n n 
C1' O5' UGA sing 406 n n 
C1' O3B UGA sing 407 n n 
C1' "H1'1" UGA sing 408 n n 
C2' O2' UGA sing 409 n n 
C2' C3' UGA sing 410 n n 
C2' "H2'1" UGA sing 411 n n 
O2' "HO'2" UGA sing 412 n n 
C3' O3' UGA sing 413 n n 
C3' C4' UGA sing 414 n n 
C3' "H3'1" UGA sing 415 n n 
O3' "HO'3" UGA sing 416 n n 
C4' O4' UGA sing 417 n n 
C4' C5' UGA sing 418 n n 
C4' "H4'1" UGA sing 419 n n 
O4' "HO'4" UGA sing 420 n n 
C5' O5' UGA sing 421 n n 
C5' C6' UGA sing 422 n n 
C5' "H5'1" UGA sing 423 n n 
C6' "O'P" UGA doub 424 n n 
C6' "O'Q" UGA sing 425 n n 
"O'Q" "HO'6" UGA sing 426 n n 
PB O1B UGA doub 427 n n 
PB O2B UGA sing 428 n n 
PB O3B UGA sing 429 n n 
PB O3A UGA sing 430 n n 
O2B HOB2 UGA sing 431 n n 
O3A PA UGA sing 432 n n 
PA O1A UGA doub 433 n n 
PA O2A UGA sing 434 n n 
PA O5D UGA sing 435 n n 
O2A HOA2 UGA sing 436 n n 
O5D C5D UGA sing 437 n n 
C5D C4D UGA sing 438 n n 
C5D H5A1 UGA sing 439 n n 
C5D "H5'2" UGA sing 440 n n 
C4D O4D UGA sing 441 n n 
C4D C3D UGA sing 442 n n 
C4D H4A1 UGA sing 443 n n 
O4D C1D UGA sing 444 n n 
C3D O3D UGA sing 445 n n 
C3D C2D UGA sing 446 n n 
C3D H3A1 UGA sing 447 n n 
O3D HOA3 UGA sing 448 n n 
C2D O2D UGA sing 449 n n 
C2D C1D UGA sing 450 n n 
C2D H2A1 UGA sing 451 n n 
O2D HOC2 UGA sing 452 n n 
C1D N1 UGA sing 453 n n 
C1D H1A1 UGA sing 454 n n 
N1 C6 UGA sing 455 n y 
N1 C2 UGA sing 456 n y 
C6 C5 UGA doub 457 n y 
C6 H61 UGA sing 458 n n 
C2 O2 UGA doub 459 n n 
C2 N3 UGA sing 460 n y 
N3 C4 UGA sing 461 n y 
N3 HN3 UGA sing 462 n n 
C4 O4 UGA doub 463 n n 
C4 C5 UGA sing 464 n y 
C5 H51 UGA sing 465 n n 
#
_atom_sites.entry_id                     1Z7E 
_atom_sites.fract_transf_matrix[1][1]    0.006592 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ATP A 1 1001 1001 ATP ATP . 
H 3 UGA A 1 1101 1101 UGA UGA . 
I 2 ATP B 1 1002 1002 ATP ATP . 
J 3 UGA B 1 1102 1102 UGA UGA . 
K 2 ATP C 1 1003 1003 ATP ATP . 
L 3 UGA C 1 1103 1103 UGA UGA . 
M 2 ATP D 1 1004 1004 ATP ATP . 
N 3 UGA D 1 1104 1104 UGA UGA . 
O 2 ATP E 1 1005 1005 ATP ATP . 
P 3 UGA E 1 1105 1105 UGA UGA . 
Q 2 ATP F 1 1006 1006 ATP ATP . 
R 3 UGA F 1 1106 1106 UGA UGA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' UGA . . . N 3 126.982 26.467 38.452 1 54.81 ? C1' UGA 1104 D 1 
HETATM 2 C C2' UGA . . . N 3 127.52 25.638 39.631 1 55.94 ? C2' UGA 1104 D 1 
HETATM 3 O O2' UGA . . . N 3 128.315 24.581 39.131 1 56.82 ? O2' UGA 1104 D 1 
HETATM 4 C C3' UGA . . . N 3 126.4 25.05 40.496 1 58.23 ? C3' UGA 1104 D 1 
HETATM 5 O O3' UGA . . . N 3 126.955 24.497 41.677 1 60.74 ? O3' UGA 1104 D 1 
HETATM 6 C C4' UGA . . . N 3 125.43 26.131 40.891 1 59.12 ? C4' UGA 1104 D 1 
HETATM 7 O O4' UGA . . . N 3 124.393 25.596 41.697 1 60.94 ? O4' UGA 1104 D 1 
HETATM 8 C C5' UGA . . . N 3 124.869 26.768 39.635 1 59.56 ? C5' UGA 1104 D 1 
HETATM 9 O O5' UGA . . . N 3 125.96 27.376 38.923 1 59.24 ? O5' UGA 1104 D 1 
HETATM 10 C C6' UGA . . . N 3 123.933 27.907 40.031 1 61.1 ? C6' UGA 1104 D 1 
HETATM 11 O "O'P" UGA . . . N 3 124.429 28.947 40.599 1 62.77 ? "O'P" UGA 1104 D 1 
HETATM 12 O "O'Q" UGA . . . N 3 122.697 27.659 40.051 1 61.93 ? "O'Q" UGA 1104 D 1 
HETATM 13 P PB UGA . . . N 3 126.109 26.012 35.903 1 38.08 ? PB UGA 1104 D 1 
HETATM 14 O O1B UGA . . . N 3 125.119 27.133 35.979 1 38.45 ? O1B UGA 1104 D 1 
HETATM 15 O O2B UGA . . . N 3 125.732 24.762 35.171 1 38.47 ? O2B UGA 1104 D 1 
HETATM 16 O O3B UGA . . . N 3 126.618 25.544 37.386 1 46.15 ? O3B UGA 1104 D 1 
HETATM 17 O O3A UGA . . . N 3 127.411 26.481 35.077 1 36.94 ? O3A UGA 1104 D 1 
HETATM 18 P PA UGA . . . N 3 128.05 27.937 34.763 1 34.44 ? PA UGA 1104 D 1 
HETATM 19 O O1A UGA . . . N 3 129.556 27.807 34.829 1 32.35 ? O1A UGA 1104 D 1 
HETATM 20 O O2A UGA . . . N 3 127.364 28.914 35.693 1 31.51 ? O2A UGA 1104 D 1 
HETATM 21 O O5D UGA . . . N 3 127.624 28.287 33.264 1 35.25 ? O5D UGA 1104 D 1 
HETATM 22 C C5D UGA . . . N 3 126.361 27.882 32.736 1 34.78 ? C5D UGA 1104 D 1 
HETATM 23 C C4D UGA . . . N 3 126.567 27.22 31.403 1 36.58 ? C4D UGA 1104 D 1 
HETATM 24 O O4D UGA . . . N 3 127.034 28.207 30.459 1 35.89 ? O4D UGA 1104 D 1 
HETATM 25 C C3D UGA . . . N 3 127.706 26.213 31.413 1 40.13 ? C3D UGA 1104 D 1 
HETATM 26 O O3D UGA . . . N 3 127.298 24.95 31.939 1 46.92 ? O3D UGA 1104 D 1 
HETATM 27 C C2D UGA . . . N 3 128.117 26.142 29.947 1 37.82 ? C2D UGA 1104 D 1 
HETATM 28 O O2D UGA . . . N 3 127.367 25.24 29.177 1 36.98 ? O2D UGA 1104 D 1 
HETATM 29 C C1D UGA . . . N 3 127.844 27.572 29.484 1 36.96 ? C1D UGA 1104 D 1 
HETATM 30 N N1 UGA . . . N 3 129.093 28.32 29.313 1 35.22 ? N1 UGA 1104 D 1 
HETATM 31 C C6 UGA . . . N 3 129.89 28.647 30.376 1 33.32 ? C6 UGA 1104 D 1 
HETATM 32 C C2 UGA . . . N 3 129.448 28.66 28.017 1 34.83 ? C2 UGA 1104 D 1 
HETATM 33 O O2 UGA . . . N 3 128.758 28.382 27.052 1 32.78 ? O2 UGA 1104 D 1 
HETATM 34 N N3 UGA . . . N 3 130.643 29.327 27.894 1 34.84 ? N3 UGA 1104 D 1 
HETATM 35 C C4 UGA . . . N 3 131.505 29.674 28.913 1 34.74 ? C4 UGA 1104 D 1 
HETATM 36 O O4 UGA . . . N 3 132.557 30.267 28.644 1 34.63 ? O4 UGA 1104 D 1 
HETATM 37 C C5 UGA . . . N 3 131.058 29.289 30.228 1 34.79 ? C5 UGA 1104 D 1 
#
_model_server_stats.io_time_ms              129 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           37 
#