data_1Z7I # _model_server_result.job_id 7bUcs78w8474Q920Dnwjpw _model_server_result.datetime_utc '2025-03-03 03:07:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":50}' # _entry.id 1Z7I # _exptl.entry_id 1Z7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z7I _cell.length_a 42.076 _cell.length_b 42.076 _cell.length_c 23.935 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 1 A DG 1 1_555 A P UMS 2 A UMS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? covale ? covale2 A O3' UMS 2 A UMS 2 1_555 A P DG 3 A DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 A N3 DC 8 A DC 8 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 A O2 DC 8 A DC 8 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 A N4 DC 8 A DC 8 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 UMS 2 A UMS 2 1_555 A N1 DA 7 A DA 7 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 UMS 2 A UMS 2 1_555 A N6 DA 7 A DA 7 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 A DG 3 1_555 A N3 DC 6 A DC 6 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 A DG 3 1_555 A O2 DC 6 A DC 6 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 A DG 3 1_555 A N4 DC 6 A DC 6 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 A N1 DA 5 A DA 5 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 A N6 DA 5 A DA 5 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 5 A DA 5 1_555 A N3 DT 4 A DT 4 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 5 A DA 5 1_555 A O4 DT 4 A DT 4 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 A DC 6 1_555 A N1 DG 3 A DG 3 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 A DC 6 1_555 A O6 DG 3 A DG 3 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 A DC 6 1_555 A N2 DG 3 A DG 3 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DA 7 A DA 7 1_555 A N3 UMS 2 A UMS 2 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N6 DA 7 A DA 7 1_555 A O4 UMS 2 A UMS 2 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 8 A DC 8 1_555 A N1 DG 1 A DG 1 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 8 A DC 8 1_555 A O6 DG 1 A DG 1 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 8 A DC 8 1_555 A N2 DG 1 A DG 1 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 152 n n N1 HN11 SPM sing 153 n n N1 HN12 SPM sing 154 n n C2 C3 SPM sing 155 n n C2 H21 SPM sing 156 n n C2 H22 SPM sing 157 n n C3 C4 SPM sing 158 n n C3 H31 SPM sing 159 n n C3 H32 SPM sing 160 n n C4 N5 SPM sing 161 n n C4 H41 SPM sing 162 n n C4 H42 SPM sing 163 n n N5 C6 SPM sing 164 n n N5 HN5 SPM sing 165 n n C6 C7 SPM sing 166 n n C6 H61 SPM sing 167 n n C6 H62 SPM sing 168 n n C7 C8 SPM sing 169 n n C7 H71 SPM sing 170 n n C7 H72 SPM sing 171 n n C8 C9 SPM sing 172 n n C8 H81 SPM sing 173 n n C8 H82 SPM sing 174 n n C9 N10 SPM sing 175 n n C9 H91 SPM sing 176 n n C9 H92 SPM sing 177 n n N10 C11 SPM sing 178 n n N10 HN0 SPM sing 179 n n C11 C12 SPM sing 180 n n C11 H111 SPM sing 181 n n C11 H112 SPM sing 182 n n C12 C13 SPM sing 183 n n C12 H121 SPM sing 184 n n C12 H122 SPM sing 185 n n C13 N14 SPM sing 186 n n C13 H131 SPM sing 187 n n C13 H132 SPM sing 188 n n N14 HN41 SPM sing 189 n n N14 HN42 SPM sing 190 n n # _atom_sites.entry_id 1Z7I _atom_sites.fract_transf_matrix[1][1] 0.023767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.04178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SPM A 1 50 50 SPM SPM . C 3 HOH A 1 51 1 HOH HOH . C 3 HOH A 2 52 2 HOH HOH . C 3 HOH A 3 53 3 HOH HOH . C 3 HOH A 4 54 4 HOH HOH . C 3 HOH A 5 55 5 HOH HOH . C 3 HOH A 6 56 6 HOH HOH . C 3 HOH A 7 57 7 HOH HOH . C 3 HOH A 8 58 8 HOH HOH . C 3 HOH A 9 59 9 HOH HOH . C 3 HOH A 10 60 10 HOH HOH . C 3 HOH A 11 61 11 HOH HOH . C 3 HOH A 12 62 12 HOH HOH . C 3 HOH A 13 63 13 HOH HOH . C 3 HOH A 14 64 14 HOH HOH . C 3 HOH A 15 65 15 HOH HOH . C 3 HOH A 16 66 16 HOH HOH . C 3 HOH A 17 67 17 HOH HOH . C 3 HOH A 18 68 18 HOH HOH . C 3 HOH A 19 69 19 HOH HOH . C 3 HOH A 20 70 20 HOH HOH . C 3 HOH A 21 71 21 HOH HOH . C 3 HOH A 22 72 22 HOH HOH . C 3 HOH A 23 73 23 HOH HOH . C 3 HOH A 24 74 24 HOH HOH . C 3 HOH A 25 75 25 HOH HOH . C 3 HOH A 26 76 26 HOH HOH . C 3 HOH A 27 77 27 HOH HOH . C 3 HOH A 28 78 28 HOH HOH . C 3 HOH A 29 79 29 HOH HOH . C 3 HOH A 30 80 30 HOH HOH . C 3 HOH A 31 81 31 HOH HOH . C 3 HOH A 32 82 32 HOH HOH . C 3 HOH A 33 83 33 HOH HOH . C 3 HOH A 34 84 34 HOH HOH . C 3 HOH A 35 85 35 HOH HOH . C 3 HOH A 36 86 36 HOH HOH . C 3 HOH A 37 87 37 HOH HOH . C 3 HOH A 38 88 38 HOH HOH . C 3 HOH A 39 89 39 HOH HOH . C 3 HOH A 40 90 40 HOH HOH . C 3 HOH A 41 91 41 HOH HOH . C 3 HOH A 42 92 42 HOH HOH . C 3 HOH A 43 93 43 HOH HOH . C 3 HOH A 44 94 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5 SPM . . . B 2 35.072 27.012 -6.428 1 21.77 ? N5 SPM 50 A 1 HETATM 2 C C6 SPM . . . B 2 36.227 27.619 -6.051 1 24.43 ? C6 SPM 50 A 1 HETATM 3 C C7 SPM . . . B 2 37.425 28.609 -6.278 1 22.53 ? C7 SPM 50 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #