data_1Z7W # _model_server_result.job_id 3bcSCtxrCRlZa5mDSgtUVw _model_server_result.datetime_utc '2024-11-30 16:19:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1Z7W # _exptl.entry_id 1Z7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z7W _cell.length_a 105.153 _cell.length_b 105.153 _cell.length_c 100.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 105.153 105.153 -50.0665 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 46 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 400 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.521 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 1Z7W _atom_sites.fract_transf_matrix[1][1] 0.00951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 3 PLP A 1 400 400 PLP PLP . D 4 HOH A 1 501 1 HOH WAT . D 4 HOH A 2 502 2 HOH WAT . D 4 HOH A 3 503 3 HOH WAT . D 4 HOH A 4 504 4 HOH WAT . D 4 HOH A 5 505 5 HOH WAT . D 4 HOH A 6 506 6 HOH WAT . D 4 HOH A 7 507 7 HOH WAT . D 4 HOH A 8 508 8 HOH WAT . D 4 HOH A 9 509 9 HOH WAT . D 4 HOH A 10 510 10 HOH WAT . D 4 HOH A 11 511 11 HOH WAT . D 4 HOH A 12 512 12 HOH WAT . D 4 HOH A 13 513 13 HOH WAT . D 4 HOH A 14 514 14 HOH WAT . D 4 HOH A 15 515 15 HOH WAT . D 4 HOH A 16 516 16 HOH WAT . D 4 HOH A 17 517 17 HOH WAT . D 4 HOH A 18 518 18 HOH WAT . D 4 HOH A 19 519 19 HOH WAT . D 4 HOH A 20 520 20 HOH WAT . D 4 HOH A 21 521 21 HOH WAT . D 4 HOH A 22 522 22 HOH WAT . D 4 HOH A 23 523 23 HOH WAT . D 4 HOH A 24 524 24 HOH WAT . D 4 HOH A 25 525 25 HOH WAT . D 4 HOH A 26 526 26 HOH WAT . D 4 HOH A 27 527 27 HOH WAT . D 4 HOH A 28 528 28 HOH WAT . D 4 HOH A 29 529 29 HOH WAT . D 4 HOH A 30 530 30 HOH WAT . D 4 HOH A 31 531 31 HOH WAT . D 4 HOH A 32 532 32 HOH WAT . D 4 HOH A 33 533 33 HOH WAT . D 4 HOH A 34 534 34 HOH WAT . D 4 HOH A 35 535 35 HOH WAT . D 4 HOH A 36 536 36 HOH WAT . D 4 HOH A 37 537 37 HOH WAT . D 4 HOH A 38 538 38 HOH WAT . D 4 HOH A 39 539 39 HOH WAT . D 4 HOH A 40 540 40 HOH WAT . D 4 HOH A 41 541 41 HOH WAT . D 4 HOH A 42 542 42 HOH WAT . D 4 HOH A 43 543 43 HOH WAT . D 4 HOH A 44 544 44 HOH WAT . D 4 HOH A 45 545 45 HOH WAT . D 4 HOH A 46 546 46 HOH WAT . D 4 HOH A 47 547 47 HOH WAT . D 4 HOH A 48 548 48 HOH WAT . D 4 HOH A 49 549 49 HOH WAT . D 4 HOH A 50 550 50 HOH WAT . D 4 HOH A 51 551 51 HOH WAT . D 4 HOH A 52 552 52 HOH WAT . D 4 HOH A 53 553 53 HOH WAT . D 4 HOH A 54 554 54 HOH WAT . D 4 HOH A 55 555 55 HOH WAT . D 4 HOH A 56 556 56 HOH WAT . D 4 HOH A 57 557 57 HOH WAT . D 4 HOH A 58 558 58 HOH WAT . D 4 HOH A 59 559 59 HOH WAT . D 4 HOH A 60 560 60 HOH WAT . D 4 HOH A 61 561 61 HOH WAT . D 4 HOH A 62 562 62 HOH WAT . D 4 HOH A 63 563 63 HOH WAT . D 4 HOH A 64 564 64 HOH WAT . D 4 HOH A 65 565 65 HOH WAT . D 4 HOH A 66 566 66 HOH WAT . D 4 HOH A 67 567 67 HOH WAT . D 4 HOH A 68 568 68 HOH WAT . D 4 HOH A 69 569 69 HOH WAT . D 4 HOH A 70 570 70 HOH WAT . D 4 HOH A 71 571 71 HOH WAT . D 4 HOH A 72 572 72 HOH WAT . D 4 HOH A 73 573 73 HOH WAT . D 4 HOH A 74 574 74 HOH WAT . D 4 HOH A 75 575 75 HOH WAT . D 4 HOH A 76 576 76 HOH WAT . D 4 HOH A 77 577 77 HOH WAT . D 4 HOH A 78 578 78 HOH WAT . D 4 HOH A 79 579 79 HOH WAT . D 4 HOH A 80 580 80 HOH WAT . D 4 HOH A 81 581 81 HOH WAT . D 4 HOH A 82 582 82 HOH WAT . D 4 HOH A 83 583 83 HOH WAT . D 4 HOH A 84 584 84 HOH WAT . D 4 HOH A 85 585 85 HOH WAT . D 4 HOH A 86 586 86 HOH WAT . D 4 HOH A 87 587 87 HOH WAT . D 4 HOH A 88 588 88 HOH WAT . D 4 HOH A 89 589 89 HOH WAT . D 4 HOH A 90 590 90 HOH WAT . D 4 HOH A 91 591 91 HOH WAT . D 4 HOH A 92 592 92 HOH WAT . D 4 HOH A 93 593 93 HOH WAT . D 4 HOH A 94 594 94 HOH WAT . D 4 HOH A 95 595 95 HOH WAT . D 4 HOH A 96 596 96 HOH WAT . D 4 HOH A 97 597 97 HOH WAT . D 4 HOH A 98 598 98 HOH WAT . D 4 HOH A 99 599 99 HOH WAT . D 4 HOH A 100 600 100 HOH WAT . D 4 HOH A 101 601 101 HOH WAT . D 4 HOH A 102 602 102 HOH WAT . D 4 HOH A 103 603 103 HOH WAT . D 4 HOH A 104 604 104 HOH WAT . D 4 HOH A 105 605 105 HOH WAT . D 4 HOH A 106 606 106 HOH WAT . D 4 HOH A 107 607 107 HOH WAT . D 4 HOH A 108 608 108 HOH WAT . D 4 HOH A 109 609 109 HOH WAT . D 4 HOH A 110 610 110 HOH WAT . D 4 HOH A 111 611 111 HOH WAT . D 4 HOH A 112 612 112 HOH WAT . D 4 HOH A 113 613 113 HOH WAT . D 4 HOH A 114 614 114 HOH WAT . D 4 HOH A 115 615 115 HOH WAT . D 4 HOH A 116 616 116 HOH WAT . D 4 HOH A 117 617 117 HOH WAT . D 4 HOH A 118 618 118 HOH WAT . D 4 HOH A 119 619 119 HOH WAT . D 4 HOH A 120 620 120 HOH WAT . D 4 HOH A 121 621 121 HOH WAT . D 4 HOH A 122 622 122 HOH WAT . D 4 HOH A 123 623 123 HOH WAT . D 4 HOH A 124 624 124 HOH WAT . D 4 HOH A 125 625 125 HOH WAT . D 4 HOH A 126 626 126 HOH WAT . D 4 HOH A 127 627 127 HOH WAT . D 4 HOH A 128 628 128 HOH WAT . D 4 HOH A 129 629 129 HOH WAT . D 4 HOH A 130 630 130 HOH WAT . D 4 HOH A 131 631 131 HOH WAT . D 4 HOH A 132 632 132 HOH WAT . D 4 HOH A 133 633 133 HOH WAT . D 4 HOH A 134 634 134 HOH WAT . D 4 HOH A 135 635 135 HOH WAT . D 4 HOH A 136 636 136 HOH WAT . D 4 HOH A 137 637 137 HOH WAT . D 4 HOH A 138 638 138 HOH WAT . D 4 HOH A 139 639 139 HOH WAT . D 4 HOH A 140 640 140 HOH WAT . D 4 HOH A 141 641 141 HOH WAT . D 4 HOH A 142 642 142 HOH WAT . D 4 HOH A 143 643 143 HOH WAT . D 4 HOH A 144 644 144 HOH WAT . D 4 HOH A 145 645 145 HOH WAT . D 4 HOH A 146 646 146 HOH WAT . D 4 HOH A 147 647 147 HOH WAT . D 4 HOH A 148 648 148 HOH WAT . D 4 HOH A 149 649 149 HOH WAT . D 4 HOH A 150 650 150 HOH WAT . D 4 HOH A 151 651 151 HOH WAT . D 4 HOH A 152 652 152 HOH WAT . D 4 HOH A 153 653 153 HOH WAT . D 4 HOH A 154 654 154 HOH WAT . D 4 HOH A 155 655 155 HOH WAT . D 4 HOH A 156 656 156 HOH WAT . D 4 HOH A 157 657 157 HOH WAT . D 4 HOH A 158 658 158 HOH WAT . D 4 HOH A 159 659 159 HOH WAT . D 4 HOH A 160 660 160 HOH WAT . D 4 HOH A 161 661 161 HOH WAT . D 4 HOH A 162 662 162 HOH WAT . D 4 HOH A 163 663 163 HOH WAT . D 4 HOH A 164 664 164 HOH WAT . D 4 HOH A 165 665 165 HOH WAT . D 4 HOH A 166 666 166 HOH WAT . D 4 HOH A 167 667 167 HOH WAT . D 4 HOH A 168 668 168 HOH WAT . D 4 HOH A 169 669 169 HOH WAT . D 4 HOH A 170 670 170 HOH WAT . D 4 HOH A 171 671 171 HOH WAT . D 4 HOH A 172 672 172 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 3 80.285 44.563 -19.941 1 18.44 ? N1 PLP 400 A 1 HETATM 2 C C2 PLP . . . C 3 79.166 44.043 -19.325 1 16.02 ? C2 PLP 400 A 1 HETATM 3 C C2A PLP . . . C 3 77.881 44.004 -20.16 1 16.5 ? C2A PLP 400 A 1 HETATM 4 C C3 PLP . . . C 3 79.278 43.604 -18.011 1 16.64 ? C3 PLP 400 A 1 HETATM 5 O O3 PLP . . . C 3 78.118 43.084 -17.423 1 14.07 ? O3 PLP 400 A 1 HETATM 6 C C4 PLP . . . C 3 80.47 43.668 -17.283 1 16.39 ? C4 PLP 400 A 1 HETATM 7 C C4A PLP . . . C 3 80.532 43.168 -15.816 1 14.29 ? C4A PLP 400 A 1 HETATM 8 C C5 PLP . . . C 3 81.629 44.21 -17.918 1 16.01 ? C5 PLP 400 A 1 HETATM 9 C C6 PLP . . . C 3 81.465 44.634 -19.242 1 18.46 ? C6 PLP 400 A 1 HETATM 10 C C5A PLP . . . C 3 83.018 44.377 -17.295 1 17.41 ? C5A PLP 400 A 1 HETATM 11 O O4P PLP . . . C 3 83.602 43.25 -16.659 1 17.32 ? O4P PLP 400 A 1 HETATM 12 P P PLP . . . C 3 84.279 43.354 -15.244 1 14.27 ? P PLP 400 A 1 HETATM 13 O O1P PLP . . . C 3 84.737 41.968 -15.014 1 13.7 ? O1P PLP 400 A 1 HETATM 14 O O2P PLP . . . C 3 83.217 43.75 -14.276 1 16.63 ? O2P PLP 400 A 1 HETATM 15 O O3P PLP . . . C 3 85.38 44.313 -15.289 1 14.38 ? O3P PLP 400 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #