data_1Z8P # _model_server_result.job_id -nYKQDSs4ELFoVppykhRQw _model_server_result.datetime_utc '2024-11-22 14:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":420}' # _entry.id 1Z8P # _exptl.entry_id 1Z8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.523 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-DEOXYERYTHRONOLIDE B' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z8P _cell.length_a 53.94 _cell.length_b 78.47 _cell.length_c 96.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 351 A CYS 351 1_555 B FE HEM . A HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B FE HEM . A HEM 410 1_555 C O1 OXY . A OXY 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc3 B FE HEM . A HEM 410 1_555 C O2 OXY . A OXY 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? # _chem_comp.formula 'C21 H38 O6' _chem_comp.formula_weight 386.523 _chem_comp.id DEB _chem_comp.mon_nstd_flag . _chem_comp.name '6-DEOXYERYTHRONOLIDE B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEB sing 83 n n C1 O16 DEB sing 84 n n C1 O17 DEB doub 85 n n C2 C3 DEB sing 86 n n C2 C18 DEB sing 87 n n C2 H2 DEB sing 88 n n C3 C4 DEB sing 89 n n C3 O19 DEB sing 90 n n C3 H3 DEB sing 91 n n C4 C5 DEB sing 92 n n C4 C20 DEB sing 93 n n C4 H4 DEB sing 94 n n C5 C6 DEB sing 95 n n C5 O21 DEB sing 96 n n C5 H5 DEB sing 97 n n C6 C7 DEB sing 98 n n C6 C22 DEB sing 99 n n C6 H6 DEB sing 100 n n C7 C8 DEB sing 101 n n C7 H71 DEB sing 102 n n C7 H72 DEB sing 103 n n C8 C9 DEB sing 104 n n C8 C23 DEB sing 105 n n C8 H8 DEB sing 106 n n C9 C10 DEB sing 107 n n C9 O24 DEB doub 108 n n C10 C11 DEB sing 109 n n C10 C25 DEB sing 110 n n C10 H10 DEB sing 111 n n C11 C12 DEB sing 112 n n C11 O26 DEB sing 113 n n C11 H11 DEB sing 114 n n C12 C13 DEB sing 115 n n C12 C27 DEB sing 116 n n C12 H12 DEB sing 117 n n C13 C14 DEB sing 118 n n C13 O16 DEB sing 119 n n C13 H13 DEB sing 120 n n C14 C15 DEB sing 121 n n C14 H141 DEB sing 122 n n C14 H142 DEB sing 123 n n C15 H151 DEB sing 124 n n C15 H152 DEB sing 125 n n C15 H153 DEB sing 126 n n C18 H181 DEB sing 127 n n C18 H182 DEB sing 128 n n C18 H183 DEB sing 129 n n O19 HO9 DEB sing 130 n n C20 H201 DEB sing 131 n n C20 H202 DEB sing 132 n n C20 H203 DEB sing 133 n n O21 HO1 DEB sing 134 n n C22 H221 DEB sing 135 n n C22 H222 DEB sing 136 n n C22 H223 DEB sing 137 n n C23 H231 DEB sing 138 n n C23 H232 DEB sing 139 n n C23 H233 DEB sing 140 n n C25 H251 DEB sing 141 n n C25 H252 DEB sing 142 n n C25 H253 DEB sing 143 n n O26 HO6 DEB sing 144 n n C27 H271 DEB sing 145 n n C27 H272 DEB sing 146 n n C27 H273 DEB sing 147 n n # _atom_sites.entry_id 1Z8P _atom_sites.fract_transf_matrix[1][1] 0.018539 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 410 410 HEM HEM . C 3 OXY A 1 417 417 OXY O2 . D 4 DEB A 1 420 420 DEB DEB . E 5 HOH A 1 421 1 HOH HOH . E 5 HOH A 2 422 2 HOH HOH . E 5 HOH A 3 423 3 HOH HOH . E 5 HOH A 4 424 4 HOH HOH . E 5 HOH A 5 425 5 HOH HOH . E 5 HOH A 6 426 6 HOH HOH . E 5 HOH A 7 427 7 HOH HOH . E 5 HOH A 8 428 8 HOH HOH . E 5 HOH A 9 429 9 HOH HOH . E 5 HOH A 10 430 10 HOH HOH . E 5 HOH A 11 431 11 HOH HOH . E 5 HOH A 12 432 12 HOH HOH . E 5 HOH A 13 433 13 HOH HOH . E 5 HOH A 14 434 14 HOH HOH . E 5 HOH A 15 435 15 HOH HOH . E 5 HOH A 16 436 16 HOH HOH . E 5 HOH A 17 437 17 HOH HOH . E 5 HOH A 18 438 18 HOH HOH . E 5 HOH A 19 439 19 HOH HOH . E 5 HOH A 20 440 20 HOH HOH . E 5 HOH A 21 441 21 HOH HOH . E 5 HOH A 22 442 22 HOH HOH . E 5 HOH A 23 443 23 HOH HOH . E 5 HOH A 24 444 24 HOH HOH . E 5 HOH A 25 445 25 HOH HOH . E 5 HOH A 26 446 26 HOH HOH . E 5 HOH A 27 447 27 HOH HOH . E 5 HOH A 28 448 28 HOH HOH . E 5 HOH A 29 449 29 HOH HOH . E 5 HOH A 30 450 30 HOH HOH . E 5 HOH A 31 451 31 HOH HOH . E 5 HOH A 32 452 32 HOH HOH . E 5 HOH A 33 453 33 HOH HOH . E 5 HOH A 34 454 34 HOH HOH . E 5 HOH A 35 455 35 HOH HOH . E 5 HOH A 36 456 36 HOH HOH . E 5 HOH A 37 457 37 HOH HOH . E 5 HOH A 38 458 38 HOH HOH . E 5 HOH A 39 459 39 HOH HOH . E 5 HOH A 40 460 40 HOH HOH . E 5 HOH A 41 461 41 HOH HOH . E 5 HOH A 42 462 42 HOH HOH . E 5 HOH A 43 463 43 HOH HOH . E 5 HOH A 44 464 44 HOH HOH . E 5 HOH A 45 465 45 HOH HOH . E 5 HOH A 46 466 46 HOH HOH . E 5 HOH A 47 467 47 HOH HOH . E 5 HOH A 48 468 48 HOH HOH . E 5 HOH A 49 469 49 HOH HOH . E 5 HOH A 50 470 50 HOH HOH . E 5 HOH A 51 471 51 HOH HOH . E 5 HOH A 52 472 52 HOH HOH . E 5 HOH A 53 473 53 HOH HOH . E 5 HOH A 54 474 54 HOH HOH . E 5 HOH A 55 475 55 HOH HOH . E 5 HOH A 56 476 56 HOH HOH . E 5 HOH A 57 477 57 HOH HOH . E 5 HOH A 58 478 58 HOH HOH . E 5 HOH A 59 479 59 HOH HOH . E 5 HOH A 60 480 60 HOH HOH . E 5 HOH A 61 481 61 HOH HOH . E 5 HOH A 62 482 62 HOH HOH . E 5 HOH A 63 483 63 HOH HOH . E 5 HOH A 64 484 64 HOH HOH . E 5 HOH A 65 485 65 HOH HOH . E 5 HOH A 66 486 66 HOH HOH . E 5 HOH A 67 487 67 HOH HOH . E 5 HOH A 68 488 68 HOH HOH . E 5 HOH A 69 489 69 HOH HOH . E 5 HOH A 70 490 70 HOH HOH . E 5 HOH A 71 491 71 HOH HOH . E 5 HOH A 72 492 72 HOH HOH . E 5 HOH A 73 493 73 HOH HOH . E 5 HOH A 74 494 74 HOH HOH . E 5 HOH A 75 495 75 HOH HOH . E 5 HOH A 76 496 76 HOH HOH . E 5 HOH A 77 497 77 HOH HOH . E 5 HOH A 78 498 78 HOH HOH . E 5 HOH A 79 499 79 HOH HOH . E 5 HOH A 80 500 80 HOH HOH . E 5 HOH A 81 501 81 HOH HOH . E 5 HOH A 82 502 82 HOH HOH . E 5 HOH A 83 503 83 HOH HOH . E 5 HOH A 84 504 84 HOH HOH . E 5 HOH A 85 505 85 HOH HOH . E 5 HOH A 86 506 86 HOH HOH . E 5 HOH A 87 507 87 HOH HOH . E 5 HOH A 88 508 88 HOH HOH . E 5 HOH A 89 509 89 HOH HOH . E 5 HOH A 90 510 90 HOH HOH . E 5 HOH A 91 511 91 HOH HOH . E 5 HOH A 92 512 92 HOH HOH . E 5 HOH A 93 513 93 HOH HOH . E 5 HOH A 94 514 94 HOH HOH . E 5 HOH A 95 515 95 HOH HOH . E 5 HOH A 96 516 96 HOH HOH . E 5 HOH A 97 517 97 HOH HOH . E 5 HOH A 98 518 98 HOH HOH . E 5 HOH A 99 519 99 HOH HOH . E 5 HOH A 100 520 100 HOH HOH . E 5 HOH A 101 521 101 HOH HOH . E 5 HOH A 102 522 102 HOH HOH . E 5 HOH A 103 523 103 HOH HOH . E 5 HOH A 104 524 104 HOH HOH . E 5 HOH A 105 525 105 HOH HOH . E 5 HOH A 106 526 106 HOH HOH . E 5 HOH A 107 527 107 HOH HOH . E 5 HOH A 108 528 108 HOH HOH . E 5 HOH A 109 529 109 HOH HOH . E 5 HOH A 110 530 110 HOH HOH . E 5 HOH A 111 531 111 HOH HOH . E 5 HOH A 112 532 112 HOH HOH . E 5 HOH A 113 533 113 HOH HOH . E 5 HOH A 114 534 114 HOH HOH . E 5 HOH A 115 535 115 HOH HOH . E 5 HOH A 116 536 116 HOH HOH . E 5 HOH A 117 537 117 HOH HOH . E 5 HOH A 118 538 118 HOH HOH . E 5 HOH A 119 539 119 HOH HOH . E 5 HOH A 120 540 120 HOH HOH . E 5 HOH A 121 541 121 HOH HOH . E 5 HOH A 122 542 122 HOH HOH . E 5 HOH A 123 543 123 HOH HOH . E 5 HOH A 124 544 124 HOH HOH . E 5 HOH A 125 545 125 HOH HOH . E 5 HOH A 126 546 126 HOH HOH . E 5 HOH A 127 547 127 HOH HOH . E 5 HOH A 128 548 128 HOH HOH . E 5 HOH A 129 549 129 HOH HOH . E 5 HOH A 130 550 130 HOH HOH . E 5 HOH A 131 551 131 HOH HOH . E 5 HOH A 132 552 132 HOH HOH . E 5 HOH A 133 553 133 HOH HOH . E 5 HOH A 134 554 134 HOH HOH . E 5 HOH A 135 555 135 HOH HOH . E 5 HOH A 136 556 136 HOH HOH . E 5 HOH A 137 557 137 HOH HOH . E 5 HOH A 138 558 138 HOH HOH . E 5 HOH A 139 559 139 HOH HOH . E 5 HOH A 140 560 140 HOH HOH . E 5 HOH A 141 561 141 HOH HOH . E 5 HOH A 142 562 142 HOH HOH . E 5 HOH A 143 563 143 HOH HOH . E 5 HOH A 144 564 144 HOH HOH . E 5 HOH A 145 565 145 HOH HOH . E 5 HOH A 146 566 146 HOH HOH . E 5 HOH A 147 567 147 HOH HOH . E 5 HOH A 148 568 148 HOH HOH . E 5 HOH A 149 569 149 HOH HOH . E 5 HOH A 150 570 150 HOH HOH . E 5 HOH A 151 571 151 HOH HOH . E 5 HOH A 152 572 152 HOH HOH . E 5 HOH A 153 573 153 HOH HOH . E 5 HOH A 154 574 154 HOH HOH . E 5 HOH A 155 575 155 HOH HOH . E 5 HOH A 156 576 156 HOH HOH . E 5 HOH A 157 577 157 HOH HOH . E 5 HOH A 158 578 158 HOH HOH . E 5 HOH A 159 579 159 HOH HOH . E 5 HOH A 160 580 160 HOH HOH . E 5 HOH A 161 581 161 HOH HOH . E 5 HOH A 162 582 162 HOH HOH . E 5 HOH A 163 583 163 HOH HOH . E 5 HOH A 164 584 164 HOH HOH . E 5 HOH A 165 585 165 HOH HOH . E 5 HOH A 166 586 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEB . . . D 4 14.449 7.335 15.838 1 17.87 ? C1 DEB 420 A 1 HETATM 2 C C2 DEB . . . D 4 15.407 6.317 15.125 1 18.89 ? C2 DEB 420 A 1 HETATM 3 C C3 DEB . . . D 4 16.221 7.008 14.04 1 19.89 ? C3 DEB 420 A 1 HETATM 4 C C4 DEB . . . D 4 15.335 7.742 12.969 1 18.67 ? C4 DEB 420 A 1 HETATM 5 C C5 DEB . . . D 4 16.236 8.77 12.174 1 21 ? C5 DEB 420 A 1 HETATM 6 C C6 DEB . . . D 4 15.733 9.786 11.1 1 16.66 ? C6 DEB 420 A 1 HETATM 7 C C7 DEB . . . D 4 14.602 10.631 11.763 1 17.92 ? C7 DEB 420 A 1 HETATM 8 C C8 DEB . . . D 4 14.926 11.362 13.128 1 16.42 ? C8 DEB 420 A 1 HETATM 9 C C9 DEB . . . D 4 13.719 12.161 13.687 1 16.39 ? C9 DEB 420 A 1 HETATM 10 C C10 DEB . . . D 4 12.398 11.364 13.901 1 16.78 ? C10 DEB 420 A 1 HETATM 11 C C11 DEB . . . D 4 12.692 10.141 14.881 1 13.52 ? C11 DEB 420 A 1 HETATM 12 C C12 DEB . . . D 4 11.574 9.14 15.274 1 14.67 ? C12 DEB 420 A 1 HETATM 13 C C13 DEB . . . D 4 12.033 8.002 16.255 1 16.05 ? C13 DEB 420 A 1 HETATM 14 C C14 DEB . . . D 4 10.872 7.049 16.644 1 14.88 ? C14 DEB 420 A 1 HETATM 15 C C15 DEB . . . D 4 11.25 5.933 17.612 1 18.32 ? C15 DEB 420 A 1 HETATM 16 O O16 DEB . . . D 4 13.077 7.175 15.669 1 16.31 ? O16 DEB 420 A 1 HETATM 17 O O17 DEB . . . D 4 14.872 8.271 16.541 1 16.81 ? O17 DEB 420 A 1 HETATM 18 C C18 DEB . . . D 4 16.324 5.651 16.141 1 18.03 ? C18 DEB 420 A 1 HETATM 19 O O19 DEB . . . D 4 17.093 6.027 13.412 1 20.14 ? O19 DEB 420 A 1 HETATM 20 C C20 DEB . . . D 4 14.662 6.673 12.055 1 18.64 ? C20 DEB 420 A 1 HETATM 21 O O21 DEB . . . D 4 17.294 8.026 11.509 1 22.84 ? O21 DEB 420 A 1 HETATM 22 C C22 DEB . . . D 4 15.167 9.154 9.814 1 13.39 ? C22 DEB 420 A 1 HETATM 23 C C23 DEB . . . D 4 16.133 12.283 12.985 1 15.95 ? C23 DEB 420 A 1 HETATM 24 O O24 DEB . . . D 4 13.815 13.361 13.952 1 18.28 ? O24 DEB 420 A 1 HETATM 25 C C25 DEB . . . D 4 11.291 12.29 14.471 1 13.34 ? C25 DEB 420 A 1 HETATM 26 O O26 DEB . . . D 4 13.259 10.679 16.12 1 14.63 ? O26 DEB 420 A 1 HETATM 27 C C27 DEB . . . D 4 10.973 8.549 13.962 1 15.67 ? C27 DEB 420 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #