data_1Z8V # _model_server_result.job_id AwXUBHYf8jWhhR4BE2skZg _model_server_result.datetime_utc '2025-01-11 08:01:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":31}' # _entry.id 1Z8V # _exptl.entry_id 1Z8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NETROPSIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z8V _cell.length_a 26.025 _cell.length_b 38.559 _cell.length_c 53.203 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 4 A DC 4 1_555 B N1 DG 9 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 4 A DC 4 1_555 B O6 DG 9 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 4 A DC 4 1_555 B N2 DG 9 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 9 A DG 9 1_555 B N3 DC 4 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 9 A DG 9 1_555 B O2 DC 4 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 9 A DG 9 1_555 B N4 DC 4 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H26 N10 O3' _chem_comp.formula_weight 430.464 _chem_comp.id NT _chem_comp.mon_nstd_flag . _chem_comp.name NETROPSIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NT doub 152 n n C1 N2 NT sing 153 n n C1 N3 NT sing 154 n n N1 HN1 NT sing 155 n n N2 HN21 NT sing 156 n n N2 HN22 NT sing 157 n n N3 C2 NT sing 158 n n N3 HN3 NT sing 159 n n C2 C3 NT sing 160 n n C2 H21 NT sing 161 n n C2 H22 NT sing 162 n n C3 O1 NT doub 163 n n C3 N4 NT sing 164 n n N4 C4 NT sing 165 n n N4 HN4 NT sing 166 n n C4 C5 NT sing 167 n y C4 C7 NT doub 168 n y C5 C6 NT doub 169 n y C5 H5 NT sing 170 n n C6 N5 NT sing 171 n y C6 C9 NT sing 172 n n N5 C8 NT sing 173 n n N5 C7 NT sing 174 n y C8 H81 NT sing 175 n n C8 H82 NT sing 176 n n C8 H83 NT sing 177 n n C7 H7 NT sing 178 n n C9 O2 NT doub 179 n n C9 N6 NT sing 180 n n N6 C10 NT sing 181 n n N6 HN6 NT sing 182 n n C10 C11 NT sing 183 n y C10 C13 NT doub 184 n y C11 C12 NT doub 185 n y C11 H11 NT sing 186 n n C12 N7 NT sing 187 n y C12 C15 NT sing 188 n n N7 C14 NT sing 189 n n N7 C13 NT sing 190 n y C14 H141 NT sing 191 n n C14 H142 NT sing 192 n n C14 H143 NT sing 193 n n C13 H13 NT sing 194 n n C15 O3 NT doub 195 n n C15 N8 NT sing 196 n n N8 C16 NT sing 197 n n N8 HN8 NT sing 198 n n C16 C17 NT sing 199 n n C16 H161 NT sing 200 n n C16 H162 NT sing 201 n n C17 C18 NT sing 202 n n C17 H171 NT sing 203 n n C17 H172 NT sing 204 n n C18 N9 NT doub 205 n n C18 N10 NT sing 206 n n N9 HN9 NT sing 207 n n N10 HN01 NT sing 208 n n N10 HN02 NT sing 209 n n # _atom_sites.entry_id 1Z8V _atom_sites.fract_transf_matrix[1][1] 0.038425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT B 1 31 31 NT NT . D 3 HOH A 1 102 102 HOH HOH . D 3 HOH A 2 104 104 HOH HOH . D 3 HOH A 3 105 105 HOH HOH . D 3 HOH A 4 106 106 HOH HOH . D 3 HOH A 5 108 108 HOH HOH . D 3 HOH A 6 112 112 HOH HOH . D 3 HOH A 7 113 113 HOH HOH . D 3 HOH A 8 115 115 HOH HOH . D 3 HOH A 9 116 116 HOH HOH . D 3 HOH A 10 118 118 HOH HOH . D 3 HOH A 11 120 120 HOH HOH . D 3 HOH A 12 123 123 HOH HOH . D 3 HOH A 13 124 124 HOH HOH . D 3 HOH A 14 125 125 HOH HOH . D 3 HOH A 15 127 127 HOH HOH . D 3 HOH A 16 130 130 HOH HOH . D 3 HOH A 17 131 131 HOH HOH . D 3 HOH A 18 133 133 HOH HOH . D 3 HOH A 19 137 137 HOH HOH . D 3 HOH A 20 144 144 HOH HOH . D 3 HOH A 21 145 145 HOH HOH . D 3 HOH A 22 147 147 HOH HOH . D 3 HOH A 23 151 151 HOH HOH . D 3 HOH A 24 152 152 HOH HOH . D 3 HOH A 25 154 154 HOH HOH . D 3 HOH A 26 159 159 HOH HOH . D 3 HOH A 27 161 161 HOH HOH . D 3 HOH A 28 162 162 HOH HOH . D 3 HOH A 29 163 163 HOH HOH . D 3 HOH A 30 165 165 HOH HOH . D 3 HOH A 31 167 167 HOH HOH . D 3 HOH A 32 168 168 HOH HOH . E 3 HOH B 1 101 101 HOH HOH . E 3 HOH B 2 103 103 HOH HOH . E 3 HOH B 3 107 107 HOH HOH . E 3 HOH B 4 109 109 HOH HOH . E 3 HOH B 5 110 110 HOH HOH . E 3 HOH B 6 111 111 HOH HOH . E 3 HOH B 7 114 114 HOH HOH . E 3 HOH B 8 117 117 HOH HOH . E 3 HOH B 9 119 119 HOH HOH . E 3 HOH B 10 121 121 HOH HOH . E 3 HOH B 11 122 122 HOH HOH . E 3 HOH B 12 126 126 HOH HOH . E 3 HOH B 13 128 128 HOH HOH . E 3 HOH B 14 129 129 HOH HOH . E 3 HOH B 15 132 132 HOH HOH . E 3 HOH B 16 134 134 HOH HOH . E 3 HOH B 17 135 135 HOH HOH . E 3 HOH B 18 136 136 HOH HOH . E 3 HOH B 19 138 138 HOH HOH . E 3 HOH B 20 139 139 HOH HOH . E 3 HOH B 21 140 140 HOH HOH . E 3 HOH B 22 141 141 HOH HOH . E 3 HOH B 23 142 142 HOH HOH . E 3 HOH B 24 143 143 HOH HOH . E 3 HOH B 25 146 146 HOH HOH . E 3 HOH B 26 148 148 HOH HOH . E 3 HOH B 27 149 149 HOH HOH . E 3 HOH B 28 150 150 HOH HOH . E 3 HOH B 29 153 153 HOH HOH . E 3 HOH B 30 155 155 HOH HOH . E 3 HOH B 31 156 156 HOH HOH . E 3 HOH B 32 157 157 HOH HOH . E 3 HOH B 33 158 158 HOH HOH . E 3 HOH B 34 160 160 HOH HOH . E 3 HOH B 35 164 164 HOH HOH . E 3 HOH B 36 166 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT . . . C 2 10.436 24.604 9.667 1 36.49 ? C1 NT 31 B 1 HETATM 2 N N1 NT . . . C 2 11.017 23.434 9.434 1 33.43 ? N1 NT 31 B 1 HETATM 3 N N2 NT . . . C 2 10.93 25.724 9.127 1 38.6 ? N2 NT 31 B 1 HETATM 4 N N3 NT . . . C 2 9.357 24.743 10.42 1 36.3 ? N3 NT 31 B 1 HETATM 5 C C2 NT . . . C 2 8.434 23.641 10.656 1 35.1 ? C2 NT 31 B 1 HETATM 6 C C3 NT . . . C 2 7.291 24.192 11.427 1 34.49 ? C3 NT 31 B 1 HETATM 7 O O1 NT . . . C 2 7.232 25.55 11.677 1 36.58 ? O1 NT 31 B 1 HETATM 8 N N4 NT . . . C 2 6.415 23.352 11.863 1 34.45 ? N4 NT 31 B 1 HETATM 9 C C4 NT . . . C 2 5.325 23.771 12.554 1 33.73 ? C4 NT 31 B 1 HETATM 10 C C5 NT . . . C 2 4.618 22.928 13.332 1 33.88 ? C5 NT 31 B 1 HETATM 11 C C6 NT . . . C 2 3.579 23.616 13.881 1 33.01 ? C6 NT 31 B 1 HETATM 12 N N5 NT . . . C 2 3.659 24.88 13.424 1 35.35 ? N5 NT 31 B 1 HETATM 13 C C8 NT . . . C 2 2.753 26.04 13.716 1 38.29 ? C8 NT 31 B 1 HETATM 14 C C7 NT . . . C 2 4.715 25.01 12.613 1 33.12 ? C7 NT 31 B 1 HETATM 15 C C9 NT . . . C 2 2.487 23.008 14.606 1 30.95 ? C9 NT 31 B 1 HETATM 16 O O2 NT . . . C 2 1.315 23.751 14.638 1 38.33 ? O2 NT 31 B 1 HETATM 17 N N6 NT . . . C 2 2.6 21.848 15.193 1 32.98 ? N6 NT 31 B 1 HETATM 18 C C10 NT . . . C 2 1.577 21.212 15.895 1 33.94 ? C10 NT 31 B 1 HETATM 19 C C11 NT . . . C 2 1.816 20.226 16.801 1 32.7 ? C11 NT 31 B 1 HETATM 20 C C12 NT . . . C 2 0.59 19.816 17.306 1 33.42 ? C12 NT 31 B 1 HETATM 21 N N7 NT . . . C 2 -0.392 20.517 16.694 1 34.79 ? N7 NT 31 B 1 HETATM 22 C C14 NT . . . C 2 -1.882 20.374 16.901 1 38.44 ? C14 NT 31 B 1 HETATM 23 C C13 NT . . . C 2 0.184 21.385 15.827 1 35.69 ? C13 NT 31 B 1 HETATM 24 C C15 NT . . . C 2 0.46 18.647 18.183 1 35.03 ? C15 NT 31 B 1 HETATM 25 O O3 NT . . . C 2 -0.705 17.949 18.159 1 40.52 ? O3 NT 31 B 1 HETATM 26 N N8 NT . . . C 2 1.436 18.242 18.982 1 34.85 ? N8 NT 31 B 1 HETATM 27 C C16 NT . . . C 2 1.281 17.075 19.847 1 36.02 ? C16 NT 31 B 1 HETATM 28 C C17 NT . . . C 2 1.467 15.803 19.056 1 35.58 ? C17 NT 31 B 1 HETATM 29 C C18 NT . . . C 2 1.379 14.58 19.939 1 38.07 ? C18 NT 31 B 1 HETATM 30 N N9 NT . . . C 2 0.158 14.071 20.133 1 40.01 ? N9 NT 31 B 1 HETATM 31 N N10 NT . . . C 2 2.421 14.017 20.492 1 33.4 ? N10 NT 31 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #