data_1Z9K # _model_server_result.job_id PnPpx8jmNRdDOniYyhQUCw _model_server_result.datetime_utc '2024-11-12 20:57:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":853}' # _entry.id 1Z9K # _exptl.entry_id 1Z9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z9K _cell.length_a 207.8 _cell.length_b 207.8 _cell.length_c 107.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 207.8 107.5 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 A HIS 153 1_555 J MG BCL . B BCL 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc2 A NE2 HIS 173 A HIS 173 1_555 E MG BCL . A BCL 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc3 A NE2 HIS 190 A HIS 190 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc4 A NE2 HIS 230 A HIS 230 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 D MG BCL . A BCL 850 1_555 B NE2 HIS 182 B HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 I MG BCL . B BCL 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 B NE2 HIS 219 B HIS 219 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc8 B OE2 GLU 234 B GLU 234 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc9 B OE1 GLU 234 B GLU 234 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc10 C NE2 HIS 128 C HIS 128 1_555 M MN MN . C MN 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc11 C NE2 HIS 128 C HIS 128 6_566 M MN MN . C MN 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 70 n n MG NB BCL sing 71 n n MG NC BCL sing 72 n n MG ND BCL sing 73 n n CHA C1A BCL sing 74 n n CHA C4D BCL doub 75 n n CHA CBD BCL sing 76 n n CHB C4A BCL doub 77 n n CHB C1B BCL sing 78 n n CHB HHB BCL sing 79 n n CHC C4B BCL sing 80 n n CHC C1C BCL doub 81 n n CHC HHC BCL sing 82 n n CHD C4C BCL sing 83 n n CHD C1D BCL doub 84 n n CHD HHD BCL sing 85 n n NA C1A BCL doub 86 n n NA C4A BCL sing 87 n n C1A C2A BCL sing 88 n n C2A C3A BCL sing 89 n n C2A CAA BCL sing 90 n n C2A H2A BCL sing 91 n n C3A C4A BCL sing 92 n n C3A CMA BCL sing 93 n n C3A H3A BCL sing 94 n n CMA HMA1 BCL sing 95 n n CMA HMA2 BCL sing 96 n n CMA HMA3 BCL sing 97 n n CAA CBA BCL sing 98 n n CAA HAA1 BCL sing 99 n n CAA HAA2 BCL sing 100 n n CBA CGA BCL sing 101 n n CBA HBA1 BCL sing 102 n n CBA HBA2 BCL sing 103 n n CGA O1A BCL doub 104 n n CGA O2A BCL sing 105 n n O2A C1 BCL sing 106 n n NB C1B BCL sing 107 n y NB C4B BCL sing 108 n y C1B C2B BCL doub 109 n y C2B C3B BCL sing 110 n y C2B CMB BCL sing 111 n n C3B C4B BCL doub 112 n y C3B CAB BCL sing 113 n n CMB HMB1 BCL sing 114 n n CMB HMB2 BCL sing 115 n n CMB HMB3 BCL sing 116 n n CAB OBB BCL doub 117 n n CAB CBB BCL sing 118 n n CBB HBB1 BCL sing 119 n n CBB HBB2 BCL sing 120 n n CBB HBB3 BCL sing 121 n n NC C1C BCL sing 122 n n NC C4C BCL doub 123 n n C1C C2C BCL sing 124 n n C2C C3C BCL sing 125 n n C2C CMC BCL sing 126 n n C2C H2C BCL sing 127 n n C3C C4C BCL sing 128 n n C3C CAC BCL sing 129 n n C3C H3C BCL sing 130 n n CMC HMC1 BCL sing 131 n n CMC HMC2 BCL sing 132 n n CMC HMC3 BCL sing 133 n n CAC CBC BCL sing 134 n n CAC HAC1 BCL sing 135 n n CAC HAC2 BCL sing 136 n n CBC HBC1 BCL sing 137 n n CBC HBC2 BCL sing 138 n n CBC HBC3 BCL sing 139 n n ND C1D BCL sing 140 n y ND C4D BCL sing 141 n y C1D C2D BCL sing 142 n y C2D C3D BCL doub 143 n y C2D CMD BCL sing 144 n n C3D C4D BCL sing 145 n y C3D CAD BCL sing 146 n n CMD HMD1 BCL sing 147 n n CMD HMD2 BCL sing 148 n n CMD HMD3 BCL sing 149 n n CAD OBD BCL doub 150 n n CAD CBD BCL sing 151 n n CBD CGD BCL sing 152 n n CBD HBD BCL sing 153 n n CGD O1D BCL doub 154 n n CGD O2D BCL sing 155 n n O2D CED BCL sing 156 n n CED HED1 BCL sing 157 n n CED HED2 BCL sing 158 n n CED HED3 BCL sing 159 n n C1 C2 BCL sing 160 n n C1 H11 BCL sing 161 n n C1 H12 BCL sing 162 n n C2 C3 BCL doub 163 e n C2 H2 BCL sing 164 n n C3 C4 BCL sing 165 n n C3 C5 BCL sing 166 n n C4 H41 BCL sing 167 n n C4 H42 BCL sing 168 n n C4 H43 BCL sing 169 n n C5 C6 BCL sing 170 n n C5 H51 BCL sing 171 n n C5 H52 BCL sing 172 n n C6 C7 BCL sing 173 n n C6 H61 BCL sing 174 n n C6 H62 BCL sing 175 n n C7 C8 BCL sing 176 n n C7 H71 BCL sing 177 n n C7 H72 BCL sing 178 n n C8 C9 BCL sing 179 n n C8 C10 BCL sing 180 n n C8 H8 BCL sing 181 n n C9 H91 BCL sing 182 n n C9 H92 BCL sing 183 n n C9 H93 BCL sing 184 n n C10 C11 BCL sing 185 n n C10 H101 BCL sing 186 n n C10 H102 BCL sing 187 n n C11 C12 BCL sing 188 n n C11 H111 BCL sing 189 n n C11 H112 BCL sing 190 n n C12 C13 BCL sing 191 n n C12 H121 BCL sing 192 n n C12 H122 BCL sing 193 n n C13 C14 BCL sing 194 n n C13 C15 BCL sing 195 n n C13 H13 BCL sing 196 n n C14 H141 BCL sing 197 n n C14 H142 BCL sing 198 n n C14 H143 BCL sing 199 n n C15 C16 BCL sing 200 n n C15 H151 BCL sing 201 n n C15 H152 BCL sing 202 n n C16 C17 BCL sing 203 n n C16 H161 BCL sing 204 n n C16 H162 BCL sing 205 n n C17 C18 BCL sing 206 n n C17 H171 BCL sing 207 n n C17 H172 BCL sing 208 n n C18 C19 BCL sing 209 n n C18 C20 BCL sing 210 n n C18 H18 BCL sing 211 n n C19 H191 BCL sing 212 n n C19 H192 BCL sing 213 n n C19 H193 BCL sing 214 n n C20 H201 BCL sing 215 n n C20 H202 BCL sing 216 n n C20 H203 BCL sing 217 n n # _atom_sites.entry_id 1Z9K _atom_sites.fract_transf_matrix[1][1] 0.004812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL A 1 850 850 BCL BCL . E 4 BCL A 1 851 851 BCL BCL . F 5 BPH A 1 855 855 BPH BPH . G 6 U10 A 1 857 857 U10 U10 . H 7 FE B 1 858 858 FE FE . I 4 BCL B 1 852 852 BCL BCL . J 4 BCL B 1 853 853 BCL BCL . K 5 BPH B 1 854 854 BPH BPH . L 6 U10 B 1 856 856 U10 U10 . M 8 MN C 1 860 860 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . J 4 30.69 56.99 31.313 1 90 ? MG BCL 853 B 1 HETATM 2 C CHA BCL . . . J 4 29.351 55.857 34.289 1 90 ? CHA BCL 853 B 1 HETATM 3 C CHB BCL . . . J 4 27.748 56.962 29.854 1 90 ? CHB BCL 853 B 1 HETATM 4 C CHC BCL . . . J 4 32.138 58.132 28.57 1 90 ? CHC BCL 853 B 1 HETATM 5 C CHD BCL . . . J 4 33.735 57.048 32.853 1 90 ? CHD BCL 853 B 1 HETATM 6 N NA BCL . . . J 4 28.838 56.482 31.98 1 90 ? NA BCL 853 B 1 HETATM 7 C C1A BCL . . . J 4 28.421 56.034 33.241 1 90 ? C1A BCL 853 B 1 HETATM 8 C C2A BCL . . . J 4 26.93 55.824 33.272 1 90 ? C2A BCL 853 B 1 HETATM 9 C C3A BCL . . . J 4 26.52 56.154 31.87 1 90 ? C3A BCL 853 B 1 HETATM 10 C C4A BCL . . . J 4 27.742 56.559 31.158 1 90 ? C4A BCL 853 B 1 HETATM 11 C CMA BCL . . . J 4 25.919 54.926 31.182 1 90 ? CMA BCL 853 B 1 HETATM 12 C CAA BCL . . . J 4 26.665 57.036 34.217 1 90 ? CAA BCL 853 B 1 HETATM 13 C CBA BCL . . . J 4 25.314 57.508 34.667 1 90 ? CBA BCL 853 B 1 HETATM 14 C CGA BCL . . . J 4 25.366 59.04 34.848 1 90 ? CGA BCL 853 B 1 HETATM 15 O O1A BCL . . . J 4 24.798 59.577 35.801 1 90 ? O1A BCL 853 B 1 HETATM 16 O O2A BCL . . . J 4 26.018 59.73 33.977 1 90 ? O2A BCL 853 B 1 HETATM 17 N NB BCL . . . J 4 30.038 57.48 29.429 1 90 ? NB BCL 853 B 1 HETATM 18 C C1B BCL . . . J 4 28.767 57.393 29.027 1 90 ? C1B BCL 853 B 1 HETATM 19 C C2B BCL . . . J 4 28.629 57.798 27.688 1 90 ? C2B BCL 853 B 1 HETATM 20 C C3B BCL . . . J 4 29.974 58.189 27.196 1 90 ? C3B BCL 853 B 1 HETATM 21 C C4B BCL . . . J 4 30.769 57.949 28.373 1 90 ? C4B BCL 853 B 1 HETATM 22 C CMB BCL . . . J 4 27.196 57.759 27.054 1 90 ? CMB BCL 853 B 1 HETATM 23 C CAB BCL . . . J 4 30.496 58.73 25.811 1 90 ? CAB BCL 853 B 1 HETATM 24 O OBB BCL . . . J 4 31.721 58.991 25.667 1 90 ? OBB BCL 853 B 1 HETATM 25 C CBB BCL . . . J 4 29.493 58.935 24.65 1 90 ? CBB BCL 853 B 1 HETATM 26 N NC BCL . . . J 4 32.592 57.501 30.793 1 90 ? NC BCL 853 B 1 HETATM 27 C C1C BCL . . . J 4 32.978 57.961 29.581 1 90 ? C1C BCL 853 B 1 HETATM 28 C C2C BCL . . . J 4 34.432 58.262 29.49 1 90 ? C2C BCL 853 B 1 HETATM 29 C C3C BCL . . . J 4 34.924 57.923 30.866 1 90 ? C3C BCL 853 B 1 HETATM 30 C C4C BCL . . . J 4 33.71 57.458 31.574 1 90 ? C4C BCL 853 B 1 HETATM 31 C CMC BCL . . . J 4 35.109 57.456 28.388 1 90 ? CMC BCL 853 B 1 HETATM 32 C CAC BCL . . . J 4 35.507 59.206 31.538 1 90 ? CAC BCL 853 B 1 HETATM 33 C CBC BCL . . . J 4 34.537 60.377 31.72 1 90 ? CBC BCL 853 B 1 HETATM 34 N ND BCL . . . J 4 31.404 56.544 33.136 1 90 ? ND BCL 853 B 1 HETATM 35 C C1D BCL . . . J 4 32.676 56.629 33.579 1 90 ? C1D BCL 853 B 1 HETATM 36 C C2D BCL . . . J 4 32.787 56.229 34.9 1 90 ? C2D BCL 853 B 1 HETATM 37 C C3D BCL . . . J 4 31.443 55.872 35.369 1 90 ? C3D BCL 853 B 1 HETATM 38 C C4D BCL . . . J 4 30.697 56.103 34.198 1 90 ? C4D BCL 853 B 1 HETATM 39 C CMD BCL . . . J 4 34.023 56.152 35.821 1 90 ? CMD BCL 853 B 1 HETATM 40 C CAD BCL . . . J 4 30.546 55.427 36.338 1 90 ? CAD BCL 853 B 1 HETATM 41 O OBD BCL . . . J 4 30.904 55.14 37.498 1 90 ? OBD BCL 853 B 1 HETATM 42 C CBD BCL . . . J 4 29.148 55.39 35.756 1 90 ? CBD BCL 853 B 1 HETATM 43 C CGD BCL . . . J 4 28.617 53.959 36.055 1 90 ? CGD BCL 853 B 1 HETATM 44 O O1D BCL . . . J 4 28.831 53.422 37.151 1 90 ? O1D BCL 853 B 1 HETATM 45 O O2D BCL . . . J 4 27.957 53.412 35.118 1 90 ? O2D BCL 853 B 1 HETATM 46 C CED BCL . . . J 4 27.372 52.101 35.201 1 90 ? CED BCL 853 B 1 HETATM 47 C C1 BCL . . . J 4 26.095 61.192 34.106 1 90 ? C1 BCL 853 B 1 HETATM 48 C C2 BCL . . . J 4 25.204 61.769 33.125 1 90 ? C2 BCL 853 B 1 HETATM 49 C C3 BCL . . . J 4 24.034 62.464 33.426 1 90 ? C3 BCL 853 B 1 HETATM 50 C C4 BCL . . . J 4 23.53 62.731 34.841 1 90 ? C4 BCL 853 B 1 HETATM 51 C C5 BCL . . . J 4 23.177 62.981 32.301 1 90 ? C5 BCL 853 B 1 HETATM 52 C C6 BCL . . . J 4 22.126 62.113 31.746 1 90 ? C6 BCL 853 B 1 HETATM 53 C C7 BCL . . . J 4 22.716 61.143 30.714 1 90 ? C7 BCL 853 B 1 HETATM 54 C C8 BCL . . . J 4 22.374 59.657 30.96 1 90 ? C8 BCL 853 B 1 HETATM 55 C C9 BCL . . . J 4 22.835 59.145 32.307 1 90 ? C9 BCL 853 B 1 HETATM 56 C C10 BCL . . . J 4 22.98 58.754 29.88 1 90 ? C10 BCL 853 B 1 HETATM 57 C C11 BCL . . . J 4 22.355 57.39 29.805 1 90 ? C11 BCL 853 B 1 HETATM 58 C C12 BCL . . . J 4 22.968 56.593 28.685 1 90 ? C12 BCL 853 B 1 HETATM 59 C C13 BCL . . . J 4 22.398 55.172 28.512 1 90 ? C13 BCL 853 B 1 HETATM 60 C C14 BCL . . . J 4 22.596 54.302 29.765 1 90 ? C14 BCL 853 B 1 HETATM 61 C C15 BCL . . . J 4 23.118 54.631 27.289 1 90 ? C15 BCL 853 B 1 HETATM 62 C C16 BCL . . . J 4 22.225 54.723 26.062 1 90 ? C16 BCL 853 B 1 HETATM 63 C C17 BCL . . . J 4 22.888 54.181 24.808 1 90 ? C17 BCL 853 B 1 HETATM 64 C C18 BCL . . . J 4 21.927 53.439 23.847 1 90 ? C18 BCL 853 B 1 HETATM 65 C C19 BCL . . . J 4 22.708 52.937 22.646 1 90 ? C19 BCL 853 B 1 HETATM 66 C C20 BCL . . . J 4 20.792 54.365 23.347 1 90 ? C20 BCL 853 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 66 #