data_1Z9K # _model_server_result.job_id 9uzRSINbTXv3nzAoKhKWXg _model_server_result.datetime_utc '2024-11-12 20:55:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1z9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":857}' # _entry.id 1Z9K # _exptl.entry_id 1Z9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1Z9K _cell.length_a 207.8 _cell.length_b 207.8 _cell.length_c 107.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 207.8 107.5 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 A HIS 153 1_555 J MG BCL . B BCL 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc2 A NE2 HIS 173 A HIS 173 1_555 E MG BCL . A BCL 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc3 A NE2 HIS 190 A HIS 190 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc4 A NE2 HIS 230 A HIS 230 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 D MG BCL . A BCL 850 1_555 B NE2 HIS 182 B HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 I MG BCL . B BCL 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 B NE2 HIS 219 B HIS 219 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc8 B OE2 GLU 234 B GLU 234 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc9 B OE1 GLU 234 B GLU 234 1_555 H FE FE . B FE 858 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc10 C NE2 HIS 128 C HIS 128 1_555 M MN MN . C MN 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc11 C NE2 HIS 128 C HIS 128 6_566 M MN MN . C MN 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 650 n n C1 C6 U10 doub 651 n n C1 C1M U10 sing 652 n n C2 C3 U10 sing 653 n n C2 O2 U10 doub 654 n n C3 C4 U10 doub 655 n n C3 O3 U10 sing 656 n n C4 C5 U10 sing 657 n n C4 O4 U10 sing 658 n n C5 C6 U10 sing 659 n n C5 O5 U10 doub 660 n n C6 C7 U10 sing 661 n n C1M H1M1 U10 sing 662 n n C1M H1M2 U10 sing 663 n n C1M H1M3 U10 sing 664 n n C3M O3 U10 sing 665 n n C3M H3M1 U10 sing 666 n n C3M H3M2 U10 sing 667 n n C3M H3M3 U10 sing 668 n n C4M O4 U10 sing 669 n n C4M H4M1 U10 sing 670 n n C4M H4M2 U10 sing 671 n n C4M H4M3 U10 sing 672 n n C7 C8 U10 sing 673 n n C7 H71 U10 sing 674 n n C7 H72 U10 sing 675 n n C8 C9 U10 doub 676 e n C8 H8 U10 sing 677 n n C9 C10 U10 sing 678 n n C9 C11 U10 sing 679 n n C10 H101 U10 sing 680 n n C10 H102 U10 sing 681 n n C10 H103 U10 sing 682 n n C11 C12 U10 sing 683 n n C11 H111 U10 sing 684 n n C11 H112 U10 sing 685 n n C12 C13 U10 sing 686 n n C12 H121 U10 sing 687 n n C12 H122 U10 sing 688 n n C13 C14 U10 doub 689 e n C13 H13 U10 sing 690 n n C14 C15 U10 sing 691 n n C14 C16 U10 sing 692 n n C15 H151 U10 sing 693 n n C15 H152 U10 sing 694 n n C15 H153 U10 sing 695 n n C16 C17 U10 sing 696 n n C16 H161 U10 sing 697 n n C16 H162 U10 sing 698 n n C17 C18 U10 sing 699 n n C17 H171 U10 sing 700 n n C17 H172 U10 sing 701 n n C18 C19 U10 doub 702 e n C18 H18 U10 sing 703 n n C19 C20 U10 sing 704 n n C19 C21 U10 sing 705 n n C20 H201 U10 sing 706 n n C20 H202 U10 sing 707 n n C20 H203 U10 sing 708 n n C21 C22 U10 sing 709 n n C21 H211 U10 sing 710 n n C21 H212 U10 sing 711 n n C22 C23 U10 sing 712 n n C22 H221 U10 sing 713 n n C22 H222 U10 sing 714 n n C23 C24 U10 doub 715 e n C23 H23 U10 sing 716 n n C24 C25 U10 sing 717 n n C24 C26 U10 sing 718 n n C25 H251 U10 sing 719 n n C25 H252 U10 sing 720 n n C25 H253 U10 sing 721 n n C26 C27 U10 sing 722 n n C26 H261 U10 sing 723 n n C26 H262 U10 sing 724 n n C27 C28 U10 sing 725 n n C27 H271 U10 sing 726 n n C27 H272 U10 sing 727 n n C28 C29 U10 doub 728 e n C28 H28 U10 sing 729 n n C29 C30 U10 sing 730 n n C29 C31 U10 sing 731 n n C30 H301 U10 sing 732 n n C30 H302 U10 sing 733 n n C30 H303 U10 sing 734 n n C31 C32 U10 sing 735 n n C31 H311 U10 sing 736 n n C31 H312 U10 sing 737 n n C32 C33 U10 sing 738 n n C32 H321 U10 sing 739 n n C32 H322 U10 sing 740 n n C33 C34 U10 doub 741 e n C33 H33 U10 sing 742 n n C34 C35 U10 sing 743 n n C34 C36 U10 sing 744 n n C35 H351 U10 sing 745 n n C35 H352 U10 sing 746 n n C35 H353 U10 sing 747 n n C36 C37 U10 sing 748 n n C36 H361 U10 sing 749 n n C36 H362 U10 sing 750 n n C37 C38 U10 sing 751 n n C37 H371 U10 sing 752 n n C37 H372 U10 sing 753 n n C38 C39 U10 doub 754 e n C38 H38 U10 sing 755 n n C39 C40 U10 sing 756 n n C39 C41 U10 sing 757 n n C40 H401 U10 sing 758 n n C40 H402 U10 sing 759 n n C40 H403 U10 sing 760 n n C41 C42 U10 sing 761 n n C41 H411 U10 sing 762 n n C41 H412 U10 sing 763 n n C42 C43 U10 sing 764 n n C42 H421 U10 sing 765 n n C42 H422 U10 sing 766 n n C43 C44 U10 doub 767 e n C43 H43 U10 sing 768 n n C44 C45 U10 sing 769 n n C44 C46 U10 sing 770 n n C45 H451 U10 sing 771 n n C45 H452 U10 sing 772 n n C45 H453 U10 sing 773 n n C46 C47 U10 sing 774 n n C46 H461 U10 sing 775 n n C46 H462 U10 sing 776 n n C47 C48 U10 sing 777 n n C47 H471 U10 sing 778 n n C47 H472 U10 sing 779 n n C48 C49 U10 doub 780 e n C48 H48 U10 sing 781 n n C49 C50 U10 sing 782 n n C49 C51 U10 sing 783 n n C50 H501 U10 sing 784 n n C50 H502 U10 sing 785 n n C50 H503 U10 sing 786 n n C51 C52 U10 sing 787 n n C51 H511 U10 sing 788 n n C51 H512 U10 sing 789 n n C52 C53 U10 sing 790 n n C52 H521 U10 sing 791 n n C52 H522 U10 sing 792 n n C53 C54 U10 doub 793 n n C53 H53 U10 sing 794 n n C54 C55 U10 sing 795 n n C54 C56 U10 sing 796 n n C55 H551 U10 sing 797 n n C55 H552 U10 sing 798 n n C55 H553 U10 sing 799 n n C56 H561 U10 sing 800 n n C56 H562 U10 sing 801 n n C56 H563 U10 sing 802 n n # _atom_sites.entry_id 1Z9K _atom_sites.fract_transf_matrix[1][1] 0.004812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL A 1 850 850 BCL BCL . E 4 BCL A 1 851 851 BCL BCL . F 5 BPH A 1 855 855 BPH BPH . G 6 U10 A 1 857 857 U10 U10 . H 7 FE B 1 858 858 FE FE . I 4 BCL B 1 852 852 BCL BCL . J 4 BCL B 1 853 853 BCL BCL . K 5 BPH B 1 854 854 BPH BPH . L 6 U10 B 1 856 856 U10 U10 . M 8 MN C 1 860 860 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . G 6 30.116 82.56 48.311 1 90 ? C1 U10 857 A 1 HETATM 2 C C2 U10 . . . G 6 28.781 83.159 48.709 1 90 ? C2 U10 857 A 1 HETATM 3 C C3 U10 . . . G 6 27.561 83.059 47.813 1 90 ? C3 U10 857 A 1 HETATM 4 C C4 U10 . . . G 6 27.652 82.339 46.461 1 90 ? C4 U10 857 A 1 HETATM 5 C C5 U10 . . . G 6 28.999 81.726 46.046 1 90 ? C5 U10 857 A 1 HETATM 6 C C6 U10 . . . G 6 30.263 81.812 46.948 1 90 ? C6 U10 857 A 1 HETATM 7 C C1M U10 . . . G 6 31.302 82.728 49.303 1 90 ? C1M U10 857 A 1 HETATM 8 C C3M U10 . . . G 6 25.83 84.814 47.623 1 90 ? C3M U10 857 A 1 HETATM 9 C C4M U10 . . . G 6 25.224 81.739 45.92 1 90 ? C4M U10 857 A 1 HETATM 10 C C7 U10 . . . G 6 31.662 81.185 46.506 1 90 ? C7 U10 857 A 1 HETATM 11 C C8 U10 . . . G 6 32.17 80.171 47.43 1 90 ? C8 U10 857 A 1 HETATM 12 C C9 U10 . . . G 6 33.09 79.155 47.192 1 90 ? C9 U10 857 A 1 HETATM 13 C C10 U10 . . . G 6 33.395 78.289 48.406 1 90 ? C10 U10 857 A 1 HETATM 14 C C11 U10 . . . G 6 33.797 78.843 45.854 1 90 ? C11 U10 857 A 1 HETATM 15 C C12 U10 . . . G 6 35.083 79.656 45.575 1 90 ? C12 U10 857 A 1 HETATM 16 C C13 U10 . . . G 6 34.964 81.011 45.014 1 90 ? C13 U10 857 A 1 HETATM 17 C C14 U10 . . . G 6 35.789 81.719 44.111 1 90 ? C14 U10 857 A 1 HETATM 18 C C15 U10 . . . G 6 35.27 83.128 43.812 1 90 ? C15 U10 857 A 1 HETATM 19 C C16 U10 . . . G 6 37.089 81.151 43.478 1 90 ? C16 U10 857 A 1 HETATM 20 C C17 U10 . . . G 6 37.845 82.11 42.509 1 90 ? C17 U10 857 A 1 HETATM 21 C C18 U10 . . . G 6 38.734 81.447 41.52 1 90 ? C18 U10 857 A 1 HETATM 22 C C19 U10 . . . G 6 40.122 81.624 41.286 1 90 ? C19 U10 857 A 1 HETATM 23 C C20 U10 . . . G 6 40.742 80.785 40.169 1 90 ? C20 U10 857 A 1 HETATM 24 C C21 U10 . . . G 6 41.067 82.591 42.043 1 90 ? C21 U10 857 A 1 HETATM 25 C C22 U10 . . . G 6 42.206 81.904 42.849 1 90 ? C22 U10 857 A 1 HETATM 26 C C23 U10 . . . G 6 42.557 82.761 43.994 1 90 ? C23 U10 857 A 1 HETATM 27 C C24 U10 . . . G 6 42.162 82.632 45.341 1 90 ? C24 U10 857 A 1 HETATM 28 C C25 U10 . . . G 6 42.704 83.71 46.299 1 90 ? C25 U10 857 A 1 HETATM 29 C C26 U10 . . . G 6 41.24 81.5 45.863 1 90 ? C26 U10 857 A 1 HETATM 30 C C27 U10 . . . G 6 40.881 81.499 47.364 1 90 ? C27 U10 857 A 1 HETATM 31 C C28 U10 . . . G 6 39.605 80.782 47.557 1 90 ? C28 U10 857 A 1 HETATM 32 C C29 U10 . . . G 6 38.573 81.101 48.494 1 90 ? C29 U10 857 A 1 HETATM 33 C C30 U10 . . . G 6 37.311 80.199 48.521 1 90 ? C30 U10 857 A 1 HETATM 34 C C31 U10 . . . G 6 38.683 82.3 49.473 1 90 ? C31 U10 857 A 1 HETATM 35 C C32 U10 . . . G 6 37.36 83.024 49.836 1 90 ? C32 U10 857 A 1 HETATM 36 C C33 U10 . . . G 6 36.873 82.475 51.111 1 90 ? C33 U10 857 A 1 HETATM 37 C C34 U10 . . . G 6 37.325 82.787 52.402 1 90 ? C34 U10 857 A 1 HETATM 38 C C35 U10 . . . G 6 36.622 82.046 53.528 1 90 ? C35 U10 857 A 1 HETATM 39 C C36 U10 . . . G 6 38.446 83.791 52.75 1 90 ? C36 U10 857 A 1 HETATM 40 C C37 U10 . . . G 6 39.765 83.105 53.161 1 90 ? C37 U10 857 A 1 HETATM 41 C C38 U10 . . . G 6 40.883 83.99 52.783 1 90 ? C38 U10 857 A 1 HETATM 42 C C39 U10 . . . G 6 42.176 83.584 52.365 1 90 ? C39 U10 857 A 1 HETATM 43 C C40 U10 . . . G 6 43.195 84.667 52.016 1 90 ? C40 U10 857 A 1 HETATM 44 C C41 U10 . . . G 6 42.613 82.12 52.238 1 90 ? C41 U10 857 A 1 HETATM 45 O O2 U10 . . . G 6 28.688 83.752 49.8 1 90 ? O2 U10 857 A 1 HETATM 46 O O3 U10 . . . G 6 26.349 83.647 48.258 1 90 ? O3 U10 857 A 1 HETATM 47 O O4 U10 . . . G 6 26.527 82.224 45.567 1 90 ? O4 U10 857 A 1 HETATM 48 O O5 U10 . . . G 6 29.029 81.154 44.939 1 90 ? O5 U10 857 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #