data_1Z9T
#
_model_server_result.job_id            97DersXFUlyq8GwSKm6xOA 
_model_server_result.datetime_utc      '2024-11-30 17:15:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1z9t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":252}' 
#
_entry.id    1Z9T 
#
_exptl.entry_id    1Z9T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    19 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1Z9T 
_cell.length_a            80.711 
_cell.length_b            80.711 
_cell.length_c            90.589 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1Z9T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 114 A VAL 102 1_555 A N MSE 115 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 115 A MSE 103 1_555 A N THR 116 A THR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 A C PHE 184 A PHE 172 1_555 A N MSE 185 A MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C MSE 185 A MSE 173 1_555 A N ALA 186 A ALA 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale5 A C ARG 247 A ARG 235 1_555 A N MSE 248 A MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C MSE 248 A MSE 236 1_555 A N ALA 249 A ALA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 103 n n 
C1 C2 EDO sing 104 n n 
C1 H11 EDO sing 105 n n 
C1 H12 EDO sing 106 n n 
O1 HO1 EDO sing 107 n n 
C2 O2 EDO sing 108 n n 
C2 H21 EDO sing 109 n n 
C2 H22 EDO sing 110 n n 
O2 HO2 EDO sing 111 n n 
#
_atom_sites.entry_id                     1Z9T 
_atom_sites.fract_transf_matrix[1][1]    0.01239 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01104 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 244 1 CIT CIT . 
C 2 CIT A 1 245 2 CIT CIT . 
D 3 EDO A 1 246 3 EDO EDO . 
E 3 EDO A 1 247 4 EDO EDO . 
F 3 EDO A 1 248 5 EDO EDO . 
G 3 EDO A 1 249 6 EDO EDO . 
H 3 EDO A 1 250 7 EDO EDO . 
I 3 EDO A 1 251 8 EDO EDO . 
J 3 EDO A 1 252 9 EDO EDO . 
K 3 EDO A 1 253 10 EDO EDO . 
L 3 EDO A 1 254 11 EDO EDO . 
M 3 EDO A 1 255 12 EDO EDO . 
N 3 EDO A 1 256 13 EDO EDO . 
O 3 EDO A 1 257 14 EDO EDO . 
P 3 EDO A 1 258 15 EDO EDO . 
Q 3 EDO A 1 259 16 EDO EDO . 
R 3 EDO A 1 260 17 EDO EDO . 
S 3 EDO A 1 261 18 EDO EDO . 
T 3 EDO A 1 262 19 EDO EDO . 
U 3 EDO A 1 263 20 EDO EDO . 
V 3 EDO A 1 264 21 EDO EDO . 
W 4 HOH A 1 265 22 HOH HOH . 
W 4 HOH A 2 266 23 HOH HOH . 
W 4 HOH A 3 267 24 HOH HOH . 
W 4 HOH A 4 268 25 HOH HOH . 
W 4 HOH A 5 269 26 HOH HOH . 
W 4 HOH A 6 270 27 HOH HOH . 
W 4 HOH A 7 271 28 HOH HOH . 
W 4 HOH A 8 272 29 HOH HOH . 
W 4 HOH A 9 273 30 HOH HOH . 
W 4 HOH A 10 274 31 HOH HOH . 
W 4 HOH A 11 275 32 HOH HOH . 
W 4 HOH A 12 276 33 HOH HOH . 
W 4 HOH A 13 277 34 HOH HOH . 
W 4 HOH A 14 278 35 HOH HOH . 
W 4 HOH A 15 279 36 HOH HOH . 
W 4 HOH A 16 280 37 HOH HOH . 
W 4 HOH A 17 281 38 HOH HOH . 
W 4 HOH A 18 282 39 HOH HOH . 
W 4 HOH A 19 283 40 HOH HOH . 
W 4 HOH A 20 284 41 HOH HOH . 
W 4 HOH A 21 285 42 HOH HOH . 
W 4 HOH A 22 286 43 HOH HOH . 
W 4 HOH A 23 287 44 HOH HOH . 
W 4 HOH A 24 288 45 HOH HOH . 
W 4 HOH A 25 289 46 HOH HOH . 
W 4 HOH A 26 290 47 HOH HOH . 
W 4 HOH A 27 291 48 HOH HOH . 
W 4 HOH A 28 292 49 HOH HOH . 
W 4 HOH A 29 293 50 HOH HOH . 
W 4 HOH A 30 294 51 HOH HOH . 
W 4 HOH A 31 295 52 HOH HOH . 
W 4 HOH A 32 296 53 HOH HOH . 
W 4 HOH A 33 297 54 HOH HOH . 
W 4 HOH A 34 298 55 HOH HOH . 
W 4 HOH A 35 299 56 HOH HOH . 
W 4 HOH A 36 300 57 HOH HOH . 
W 4 HOH A 37 301 58 HOH HOH . 
W 4 HOH A 38 302 59 HOH HOH . 
W 4 HOH A 39 303 60 HOH HOH . 
W 4 HOH A 40 304 61 HOH HOH . 
W 4 HOH A 41 305 62 HOH HOH . 
W 4 HOH A 42 306 63 HOH HOH . 
W 4 HOH A 43 307 64 HOH HOH . 
W 4 HOH A 44 308 65 HOH HOH . 
W 4 HOH A 45 309 66 HOH HOH . 
W 4 HOH A 46 310 67 HOH HOH . 
W 4 HOH A 47 311 68 HOH HOH . 
W 4 HOH A 48 312 69 HOH HOH . 
W 4 HOH A 49 313 70 HOH HOH . 
W 4 HOH A 50 314 71 HOH HOH . 
W 4 HOH A 51 315 72 HOH HOH . 
W 4 HOH A 52 316 73 HOH HOH . 
W 4 HOH A 53 317 74 HOH HOH . 
W 4 HOH A 54 318 75 HOH HOH . 
W 4 HOH A 55 319 76 HOH HOH . 
W 4 HOH A 56 320 77 HOH HOH . 
W 4 HOH A 57 321 78 HOH HOH . 
W 4 HOH A 58 322 79 HOH HOH . 
W 4 HOH A 59 323 80 HOH HOH . 
W 4 HOH A 60 324 81 HOH HOH . 
W 4 HOH A 61 325 82 HOH HOH . 
W 4 HOH A 62 326 83 HOH HOH . 
W 4 HOH A 63 327 84 HOH HOH . 
W 4 HOH A 64 328 85 HOH HOH . 
W 4 HOH A 65 329 86 HOH HOH . 
W 4 HOH A 66 330 87 HOH HOH . 
W 4 HOH A 67 331 88 HOH HOH . 
W 4 HOH A 68 332 89 HOH HOH . 
W 4 HOH A 69 333 90 HOH HOH . 
W 4 HOH A 70 334 91 HOH HOH . 
W 4 HOH A 71 335 92 HOH HOH . 
W 4 HOH A 72 336 93 HOH HOH . 
W 4 HOH A 73 337 94 HOH HOH . 
W 4 HOH A 74 338 95 HOH HOH . 
W 4 HOH A 75 339 96 HOH HOH . 
W 4 HOH A 76 340 97 HOH HOH . 
W 4 HOH A 77 341 98 HOH HOH . 
W 4 HOH A 78 342 99 HOH HOH . 
W 4 HOH A 79 343 100 HOH HOH . 
W 4 HOH A 80 344 101 HOH HOH . 
W 4 HOH A 81 345 102 HOH HOH . 
W 4 HOH A 82 346 103 HOH HOH . 
W 4 HOH A 83 347 104 HOH HOH . 
W 4 HOH A 84 348 105 HOH HOH . 
W 4 HOH A 85 349 106 HOH HOH . 
W 4 HOH A 86 350 107 HOH HOH . 
W 4 HOH A 87 351 108 HOH HOH . 
W 4 HOH A 88 352 109 HOH HOH . 
W 4 HOH A 89 353 110 HOH HOH . 
W 4 HOH A 90 354 112 HOH HOH . 
W 4 HOH A 91 355 113 HOH HOH . 
W 4 HOH A 92 356 114 HOH HOH . 
W 4 HOH A 93 357 115 HOH HOH . 
W 4 HOH A 94 358 116 HOH HOH . 
W 4 HOH A 95 359 117 HOH HOH . 
W 4 HOH A 96 360 118 HOH HOH . 
W 4 HOH A 97 361 119 HOH HOH . 
W 4 HOH A 98 362 120 HOH HOH . 
W 4 HOH A 99 363 121 HOH HOH . 
W 4 HOH A 100 364 122 HOH HOH . 
W 4 HOH A 101 365 123 HOH HOH . 
W 4 HOH A 102 366 124 HOH HOH . 
W 4 HOH A 103 367 125 HOH HOH . 
W 4 HOH A 104 368 126 HOH HOH . 
W 4 HOH A 105 369 127 HOH HOH . 
W 4 HOH A 106 370 128 HOH HOH . 
W 4 HOH A 107 371 129 HOH HOH . 
W 4 HOH A 108 372 130 HOH HOH . 
W 4 HOH A 109 373 131 HOH HOH . 
W 4 HOH A 110 374 132 HOH HOH . 
W 4 HOH A 111 375 133 HOH HOH . 
W 4 HOH A 112 376 134 HOH HOH . 
W 4 HOH A 113 377 135 HOH HOH . 
W 4 HOH A 114 378 136 HOH HOH . 
W 4 HOH A 115 379 137 HOH HOH . 
W 4 HOH A 116 380 138 HOH HOH . 
W 4 HOH A 117 381 139 HOH HOH . 
W 4 HOH A 118 382 140 HOH HOH . 
W 4 HOH A 119 383 141 HOH HOH . 
W 4 HOH A 120 384 142 HOH HOH . 
W 4 HOH A 121 385 143 HOH HOH . 
W 4 HOH A 122 386 144 HOH HOH . 
W 4 HOH A 123 387 145 HOH HOH . 
W 4 HOH A 124 388 146 HOH HOH . 
W 4 HOH A 125 389 147 HOH HOH . 
W 4 HOH A 126 390 148 HOH HOH . 
W 4 HOH A 127 391 149 HOH HOH . 
W 4 HOH A 128 392 150 HOH HOH . 
W 4 HOH A 129 393 151 HOH HOH . 
W 4 HOH A 130 394 152 HOH HOH . 
W 4 HOH A 131 395 153 HOH HOH . 
W 4 HOH A 132 396 154 HOH HOH . 
W 4 HOH A 133 397 155 HOH HOH . 
W 4 HOH A 134 398 156 HOH HOH . 
W 4 HOH A 135 399 157 HOH HOH . 
W 4 HOH A 136 400 158 HOH HOH . 
W 4 HOH A 137 401 159 HOH HOH . 
W 4 HOH A 138 402 160 HOH HOH . 
W 4 HOH A 139 403 161 HOH HOH . 
W 4 HOH A 140 404 162 HOH HOH . 
W 4 HOH A 141 405 163 HOH HOH . 
W 4 HOH A 142 406 164 HOH HOH . 
W 4 HOH A 143 407 165 HOH HOH . 
W 4 HOH A 144 408 166 HOH HOH . 
W 4 HOH A 145 409 167 HOH HOH . 
W 4 HOH A 146 410 168 HOH HOH . 
W 4 HOH A 147 411 169 HOH HOH . 
W 4 HOH A 148 412 170 HOH HOH . 
W 4 HOH A 149 413 171 HOH HOH . 
W 4 HOH A 150 414 172 HOH HOH . 
W 4 HOH A 151 415 173 HOH HOH . 
W 4 HOH A 152 416 174 HOH HOH . 
W 4 HOH A 153 417 175 HOH HOH . 
W 4 HOH A 154 418 176 HOH HOH . 
W 4 HOH A 155 419 177 HOH HOH . 
W 4 HOH A 156 420 178 HOH HOH . 
W 4 HOH A 157 421 179 HOH HOH . 
W 4 HOH A 158 422 180 HOH HOH . 
W 4 HOH A 159 423 181 HOH HOH . 
W 4 HOH A 160 424 182 HOH HOH . 
W 4 HOH A 161 425 183 HOH HOH . 
W 4 HOH A 162 426 184 HOH HOH . 
W 4 HOH A 163 427 185 HOH HOH . 
W 4 HOH A 164 428 186 HOH HOH . 
W 4 HOH A 165 429 187 HOH HOH . 
W 4 HOH A 166 430 188 HOH HOH . 
W 4 HOH A 167 431 189 HOH HOH . 
W 4 HOH A 168 432 190 HOH HOH . 
W 4 HOH A 169 433 191 HOH HOH . 
W 4 HOH A 170 434 192 HOH HOH . 
W 4 HOH A 171 435 193 HOH HOH . 
W 4 HOH A 172 436 194 HOH HOH . 
W 4 HOH A 173 437 195 HOH HOH . 
W 4 HOH A 174 438 196 HOH HOH . 
W 4 HOH A 175 439 197 HOH HOH . 
W 4 HOH A 176 440 198 HOH HOH . 
W 4 HOH A 177 441 199 HOH HOH . 
W 4 HOH A 178 442 200 HOH HOH . 
W 4 HOH A 179 443 201 HOH HOH . 
W 4 HOH A 180 444 202 HOH HOH . 
W 4 HOH A 181 445 203 HOH HOH . 
W 4 HOH A 182 446 204 HOH HOH . 
W 4 HOH A 183 447 205 HOH HOH . 
W 4 HOH A 184 448 206 HOH HOH . 
W 4 HOH A 185 449 207 HOH HOH . 
W 4 HOH A 186 450 208 HOH HOH . 
W 4 HOH A 187 451 209 HOH HOH . 
W 4 HOH A 188 452 210 HOH HOH . 
W 4 HOH A 189 453 211 HOH HOH . 
W 4 HOH A 190 454 212 HOH HOH . 
W 4 HOH A 191 455 213 HOH HOH . 
W 4 HOH A 192 456 214 HOH HOH . 
W 4 HOH A 193 457 215 HOH HOH . 
W 4 HOH A 194 458 216 HOH HOH . 
W 4 HOH A 195 459 217 HOH HOH . 
W 4 HOH A 196 460 218 HOH HOH . 
W 4 HOH A 197 461 219 HOH HOH . 
W 4 HOH A 198 462 220 HOH HOH . 
W 4 HOH A 199 463 221 HOH HOH . 
W 4 HOH A 200 464 222 HOH HOH . 
W 4 HOH A 201 465 223 HOH HOH . 
W 4 HOH A 202 466 224 HOH HOH . 
W 4 HOH A 203 467 225 HOH HOH . 
W 4 HOH A 204 468 226 HOH HOH . 
W 4 HOH A 205 469 227 HOH HOH . 
W 4 HOH A 206 470 228 HOH HOH . 
W 4 HOH A 207 471 229 HOH HOH . 
W 4 HOH A 208 472 230 HOH HOH . 
W 4 HOH A 209 473 231 HOH HOH . 
W 4 HOH A 210 474 232 HOH HOH . 
W 4 HOH A 211 475 233 HOH HOH . 
W 4 HOH A 212 476 234 HOH HOH . 
W 4 HOH A 213 477 235 HOH HOH . 
W 4 HOH A 214 478 236 HOH HOH . 
W 4 HOH A 215 479 237 HOH HOH . 
W 4 HOH A 216 480 238 HOH HOH . 
W 4 HOH A 217 481 239 HOH HOH . 
W 4 HOH A 218 482 240 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 3 -4.93 23.013 9.432 1 19.94 ? C1 EDO 252 A 1 
HETATM 2 O O1 EDO . . . J 3 -4.888 24.432 9.103 1 22.73 ? O1 EDO 252 A 1 
HETATM 3 C C2 EDO . . . J 3 -6.28 22.493 9.943 1 21.11 ? C2 EDO 252 A 1 
HETATM 4 O O2 EDO . . . J 3 -7.292 22.633 8.9 1 25.16 ? O2 EDO 252 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           391 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#