data_1ZA4 # _model_server_result.job_id yV8_sxFr6BZTwi2vRyfUCA _model_server_result.datetime_utc '2024-10-18 05:22:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1za4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":248}' # _entry.id 1ZA4 # _exptl.entry_id 1ZA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.298 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZA4 _cell.length_a 42.404 _cell.length_b 53.053 _cell.length_c 92.723 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 82 A GLN 78 1_555 A N MSE 83 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 83 A MSE 79 1_555 A N LYS 84 A LYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LYS 159 A LYS 155 1_555 A N MSE 160 A MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 160 A MSE 156 1_555 A N GLU 161 A GLU 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C6 H13 N O11 S2' _chem_comp.formula_weight 339.298 _chem_comp.id SGN _chem_comp.mon_nstd_flag n _chem_comp.name 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SGN DGlcpNS[6S]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SGN N-sulfo-6-sulfo-a-D-glucopyranose 'COMMON NAME' GMML 1 SGN a-D-GlcpNSO36SO3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 1ZA4 _atom_sites.fract_transf_matrix[1][1] 0.023583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SGN A 1 248 161 SGN SGN . C 3 SO4 A 1 249 111 SO4 SO4 . D 3 SO4 A 1 250 121 SO4 SO4 . E 3 SO4 A 1 251 131 SO4 SO4 . F 3 SO4 A 1 252 141 SO4 SO4 . G 3 SO4 A 1 253 151 SO4 SO4 . H 4 HOH A 1 254 1 HOH HOH . H 4 HOH A 2 255 2 HOH HOH . H 4 HOH A 3 256 3 HOH HOH . H 4 HOH A 4 257 4 HOH HOH . H 4 HOH A 5 258 5 HOH HOH . H 4 HOH A 6 259 6 HOH HOH . H 4 HOH A 7 260 7 HOH HOH . H 4 HOH A 8 261 8 HOH HOH . H 4 HOH A 9 262 9 HOH HOH . H 4 HOH A 10 263 10 HOH HOH . H 4 HOH A 11 264 11 HOH HOH . H 4 HOH A 12 265 12 HOH HOH . H 4 HOH A 13 266 13 HOH HOH . H 4 HOH A 14 267 14 HOH HOH . H 4 HOH A 15 268 15 HOH HOH . H 4 HOH A 16 269 16 HOH HOH . H 4 HOH A 17 270 17 HOH HOH . H 4 HOH A 18 271 18 HOH HOH . H 4 HOH A 19 272 19 HOH HOH . H 4 HOH A 20 273 20 HOH HOH . H 4 HOH A 21 274 21 HOH HOH . H 4 HOH A 22 275 22 HOH HOH . H 4 HOH A 23 276 23 HOH HOH . H 4 HOH A 24 277 24 HOH HOH . H 4 HOH A 25 278 25 HOH HOH . H 4 HOH A 26 279 26 HOH HOH . H 4 HOH A 27 280 27 HOH HOH . H 4 HOH A 28 281 28 HOH HOH . H 4 HOH A 29 282 29 HOH HOH . H 4 HOH A 30 283 30 HOH HOH . H 4 HOH A 31 284 31 HOH HOH . H 4 HOH A 32 285 32 HOH HOH . H 4 HOH A 33 286 33 HOH HOH . H 4 HOH A 34 287 34 HOH HOH . H 4 HOH A 35 288 35 HOH HOH . H 4 HOH A 36 289 36 HOH HOH . H 4 HOH A 37 290 37 HOH HOH . H 4 HOH A 38 291 38 HOH HOH . H 4 HOH A 39 292 39 HOH HOH . H 4 HOH A 40 293 40 HOH HOH . H 4 HOH A 41 294 41 HOH HOH . H 4 HOH A 42 295 42 HOH HOH . H 4 HOH A 43 296 43 HOH HOH . H 4 HOH A 44 297 44 HOH HOH . H 4 HOH A 45 298 45 HOH HOH . H 4 HOH A 46 299 46 HOH HOH . H 4 HOH A 47 300 47 HOH HOH . H 4 HOH A 48 301 48 HOH HOH . H 4 HOH A 49 302 49 HOH HOH . H 4 HOH A 50 303 50 HOH HOH . H 4 HOH A 51 304 51 HOH HOH . H 4 HOH A 52 305 52 HOH HOH . H 4 HOH A 53 306 53 HOH HOH . H 4 HOH A 54 307 54 HOH HOH . H 4 HOH A 55 308 55 HOH HOH . H 4 HOH A 56 309 56 HOH HOH . H 4 HOH A 57 310 57 HOH HOH . H 4 HOH A 58 311 58 HOH HOH . H 4 HOH A 59 312 59 HOH HOH . H 4 HOH A 60 313 60 HOH HOH . H 4 HOH A 61 314 61 HOH HOH . H 4 HOH A 62 315 62 HOH HOH . H 4 HOH A 63 316 63 HOH HOH . H 4 HOH A 64 317 64 HOH HOH . H 4 HOH A 65 318 65 HOH HOH . H 4 HOH A 66 319 66 HOH HOH . H 4 HOH A 67 320 67 HOH HOH . H 4 HOH A 68 321 68 HOH HOH . H 4 HOH A 69 322 69 HOH HOH . H 4 HOH A 70 323 70 HOH HOH . H 4 HOH A 71 324 71 HOH HOH . H 4 HOH A 72 325 72 HOH HOH . H 4 HOH A 73 326 73 HOH HOH . H 4 HOH A 74 327 74 HOH HOH . H 4 HOH A 75 328 75 HOH HOH . H 4 HOH A 76 329 76 HOH HOH . H 4 HOH A 77 330 77 HOH HOH . H 4 HOH A 78 331 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SGN . . . B 2 0.755 -0.903 9.543 1 64.88 ? C1 SGN 248 A 1 HETATM 2 C C2 SGN . . . B 2 0.811 -0.259 8.152 1 63.08 ? C2 SGN 248 A 1 HETATM 3 C C3 SGN . . . B 2 2.133 -0.704 7.497 1 59.71 ? C3 SGN 248 A 1 HETATM 4 C C4 SGN . . . B 2 3.264 -0.134 8.397 1 56.23 ? C4 SGN 248 A 1 HETATM 5 C C5 SGN . . . B 2 3.137 -0.776 9.795 1 63.23 ? C5 SGN 248 A 1 HETATM 6 C C6 SGN . . . B 2 4.177 -0.271 10.791 1 70.07 ? C6 SGN 248 A 1 HETATM 7 N N2 SGN . . . B 2 -0.355 -0.692 7.365 1 64.78 ? N2 SGN 248 A 1 HETATM 8 O O1 SGN . . . B 2 0.808 -2.348 9.395 1 66.53 ? O1 SGN 248 A 1 HETATM 9 O O3 SGN . . . B 2 2.229 -0.142 6.214 1 61.3 ? O3 SGN 248 A 1 HETATM 10 O O4 SGN . . . B 2 4.554 -0.455 7.887 1 43.41 ? O4 SGN 248 A 1 HETATM 11 O O5 SGN . . . B 2 1.857 -0.485 10.355 1 63.8 ? O5 SGN 248 A 1 HETATM 12 O O6 SGN . . . B 2 4.173 1.15 10.764 1 78.55 ? O6 SGN 248 A 1 HETATM 13 S S1 SGN . . . B 2 -1.284 0.52 6.676 1 67.27 ? S1 SGN 248 A 1 HETATM 14 O O1S SGN . . . B 2 -0.696 1.798 7.055 1 67.78 ? O1S SGN 248 A 1 HETATM 15 O O2S SGN . . . B 2 -1.214 0.317 5.248 1 67.08 ? O2S SGN 248 A 1 HETATM 16 O O3S SGN . . . B 2 -2.623 0.369 7.196 1 69.44 ? O3S SGN 248 A 1 HETATM 17 S S2 SGN . . . B 2 5.081 2.104 11.634 1 84.74 ? S2 SGN 248 A 1 HETATM 18 O O4S SGN . . . B 2 6.446 1.707 11.367 1 86.69 ? O4S SGN 248 A 1 HETATM 19 O O5S SGN . . . B 2 4.804 3.452 11.19 1 85.83 ? O5S SGN 248 A 1 HETATM 20 O O6S SGN . . . B 2 4.689 1.863 13.009 1 85.16 ? O6S SGN 248 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #