data_1ZA4
#
_model_server_result.job_id            6QE9N4dSZdFq6qLmF9c-sw 
_model_server_result.datetime_utc      '2024-12-22 11:21:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1za4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":248}' 
#
_entry.id    1ZA4 
#
_exptl.entry_id    1ZA4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              339.298 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZA4 
_cell.length_a            42.404 
_cell.length_b            53.053 
_cell.length_c            92.723 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZA4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 82 A GLN 78 1_555 A N MSE 83 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 83 A MSE 79 1_555 A N LYS 84 A LYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C LYS 159 A LYS 155 1_555 A N MSE 160 A MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale4 A C MSE 160 A MSE 156 1_555 A N GLU 161 A GLU 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C6 H13 N O11 S2' 
_chem_comp.formula_weight    339.298 
_chem_comp.id                SGN 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N,O6-DISULFO-GLUCOSAMINE;6-O-sulfo-N-sulfo-alpha-D-glucosamine;2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucose;2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose;2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SGN sing 309 n n 
C1 O1 SGN sing 310 n n 
C1 O5 SGN sing 311 n n 
C1 H1 SGN sing 312 n n 
C2 C3 SGN sing 313 n n 
C2 N2 SGN sing 314 n n 
C2 H2 SGN sing 315 n n 
C3 C4 SGN sing 316 n n 
C3 O3 SGN sing 317 n n 
C3 H3 SGN sing 318 n n 
C4 C5 SGN sing 319 n n 
C4 O4 SGN sing 320 n n 
C4 H4 SGN sing 321 n n 
C5 C6 SGN sing 322 n n 
C5 O5 SGN sing 323 n n 
C5 H5 SGN sing 324 n n 
C6 O6 SGN sing 325 n n 
C6 H61 SGN sing 326 n n 
C6 H62 SGN sing 327 n n 
N2 S1 SGN sing 328 n n 
N2 HN21 SGN sing 329 n n 
O1 HO1 SGN sing 330 n n 
O3 HO3 SGN sing 331 n n 
O4 HO4 SGN sing 332 n n 
O6 S2 SGN sing 333 n n 
S1 O1S SGN doub 334 n n 
S1 O2S SGN doub 335 n n 
S1 O3S SGN sing 336 n n 
O3S HOS3 SGN sing 337 n n 
S2 O4S SGN doub 338 n n 
S2 O5S SGN doub 339 n n 
S2 O6S SGN sing 340 n n 
O6S HOS6 SGN sing 341 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
SGN DGlcpNS[6S]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
SGN N-sulfo-6-sulfo-a-D-glucopyranose 'COMMON NAME' GMML 1 
SGN a-D-GlcpNSO36SO3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
#
_atom_sites.entry_id                     1ZA4 
_atom_sites.fract_transf_matrix[1][1]    0.023583 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SGN A 1 248 161 SGN SGN . 
C 3 SO4 A 1 249 111 SO4 SO4 . 
D 3 SO4 A 1 250 121 SO4 SO4 . 
E 3 SO4 A 1 251 131 SO4 SO4 . 
F 3 SO4 A 1 252 141 SO4 SO4 . 
G 3 SO4 A 1 253 151 SO4 SO4 . 
H 4 HOH A 1 254 1 HOH HOH . 
H 4 HOH A 2 255 2 HOH HOH . 
H 4 HOH A 3 256 3 HOH HOH . 
H 4 HOH A 4 257 4 HOH HOH . 
H 4 HOH A 5 258 5 HOH HOH . 
H 4 HOH A 6 259 6 HOH HOH . 
H 4 HOH A 7 260 7 HOH HOH . 
H 4 HOH A 8 261 8 HOH HOH . 
H 4 HOH A 9 262 9 HOH HOH . 
H 4 HOH A 10 263 10 HOH HOH . 
H 4 HOH A 11 264 11 HOH HOH . 
H 4 HOH A 12 265 12 HOH HOH . 
H 4 HOH A 13 266 13 HOH HOH . 
H 4 HOH A 14 267 14 HOH HOH . 
H 4 HOH A 15 268 15 HOH HOH . 
H 4 HOH A 16 269 16 HOH HOH . 
H 4 HOH A 17 270 17 HOH HOH . 
H 4 HOH A 18 271 18 HOH HOH . 
H 4 HOH A 19 272 19 HOH HOH . 
H 4 HOH A 20 273 20 HOH HOH . 
H 4 HOH A 21 274 21 HOH HOH . 
H 4 HOH A 22 275 22 HOH HOH . 
H 4 HOH A 23 276 23 HOH HOH . 
H 4 HOH A 24 277 24 HOH HOH . 
H 4 HOH A 25 278 25 HOH HOH . 
H 4 HOH A 26 279 26 HOH HOH . 
H 4 HOH A 27 280 27 HOH HOH . 
H 4 HOH A 28 281 28 HOH HOH . 
H 4 HOH A 29 282 29 HOH HOH . 
H 4 HOH A 30 283 30 HOH HOH . 
H 4 HOH A 31 284 31 HOH HOH . 
H 4 HOH A 32 285 32 HOH HOH . 
H 4 HOH A 33 286 33 HOH HOH . 
H 4 HOH A 34 287 34 HOH HOH . 
H 4 HOH A 35 288 35 HOH HOH . 
H 4 HOH A 36 289 36 HOH HOH . 
H 4 HOH A 37 290 37 HOH HOH . 
H 4 HOH A 38 291 38 HOH HOH . 
H 4 HOH A 39 292 39 HOH HOH . 
H 4 HOH A 40 293 40 HOH HOH . 
H 4 HOH A 41 294 41 HOH HOH . 
H 4 HOH A 42 295 42 HOH HOH . 
H 4 HOH A 43 296 43 HOH HOH . 
H 4 HOH A 44 297 44 HOH HOH . 
H 4 HOH A 45 298 45 HOH HOH . 
H 4 HOH A 46 299 46 HOH HOH . 
H 4 HOH A 47 300 47 HOH HOH . 
H 4 HOH A 48 301 48 HOH HOH . 
H 4 HOH A 49 302 49 HOH HOH . 
H 4 HOH A 50 303 50 HOH HOH . 
H 4 HOH A 51 304 51 HOH HOH . 
H 4 HOH A 52 305 52 HOH HOH . 
H 4 HOH A 53 306 53 HOH HOH . 
H 4 HOH A 54 307 54 HOH HOH . 
H 4 HOH A 55 308 55 HOH HOH . 
H 4 HOH A 56 309 56 HOH HOH . 
H 4 HOH A 57 310 57 HOH HOH . 
H 4 HOH A 58 311 58 HOH HOH . 
H 4 HOH A 59 312 59 HOH HOH . 
H 4 HOH A 60 313 60 HOH HOH . 
H 4 HOH A 61 314 61 HOH HOH . 
H 4 HOH A 62 315 62 HOH HOH . 
H 4 HOH A 63 316 63 HOH HOH . 
H 4 HOH A 64 317 64 HOH HOH . 
H 4 HOH A 65 318 65 HOH HOH . 
H 4 HOH A 66 319 66 HOH HOH . 
H 4 HOH A 67 320 67 HOH HOH . 
H 4 HOH A 68 321 68 HOH HOH . 
H 4 HOH A 69 322 69 HOH HOH . 
H 4 HOH A 70 323 70 HOH HOH . 
H 4 HOH A 71 324 71 HOH HOH . 
H 4 HOH A 72 325 72 HOH HOH . 
H 4 HOH A 73 326 73 HOH HOH . 
H 4 HOH A 74 327 74 HOH HOH . 
H 4 HOH A 75 328 75 HOH HOH . 
H 4 HOH A 76 329 76 HOH HOH . 
H 4 HOH A 77 330 77 HOH HOH . 
H 4 HOH A 78 331 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SGN . . . B 2 0.755 -0.903 9.543 1 64.88 ? C1 SGN 248 A 1 
HETATM 2 C C2 SGN . . . B 2 0.811 -0.259 8.152 1 63.08 ? C2 SGN 248 A 1 
HETATM 3 C C3 SGN . . . B 2 2.133 -0.704 7.497 1 59.71 ? C3 SGN 248 A 1 
HETATM 4 C C4 SGN . . . B 2 3.264 -0.134 8.397 1 56.23 ? C4 SGN 248 A 1 
HETATM 5 C C5 SGN . . . B 2 3.137 -0.776 9.795 1 63.23 ? C5 SGN 248 A 1 
HETATM 6 C C6 SGN . . . B 2 4.177 -0.271 10.791 1 70.07 ? C6 SGN 248 A 1 
HETATM 7 N N2 SGN . . . B 2 -0.355 -0.692 7.365 1 64.78 ? N2 SGN 248 A 1 
HETATM 8 O O1 SGN . . . B 2 0.808 -2.348 9.395 1 66.53 ? O1 SGN 248 A 1 
HETATM 9 O O3 SGN . . . B 2 2.229 -0.142 6.214 1 61.3 ? O3 SGN 248 A 1 
HETATM 10 O O4 SGN . . . B 2 4.554 -0.455 7.887 1 43.41 ? O4 SGN 248 A 1 
HETATM 11 O O5 SGN . . . B 2 1.857 -0.485 10.355 1 63.8 ? O5 SGN 248 A 1 
HETATM 12 O O6 SGN . . . B 2 4.173 1.15 10.764 1 78.55 ? O6 SGN 248 A 1 
HETATM 13 S S1 SGN . . . B 2 -1.284 0.52 6.676 1 67.27 ? S1 SGN 248 A 1 
HETATM 14 O O1S SGN . . . B 2 -0.696 1.798 7.055 1 67.78 ? O1S SGN 248 A 1 
HETATM 15 O O2S SGN . . . B 2 -1.214 0.317 5.248 1 67.08 ? O2S SGN 248 A 1 
HETATM 16 O O3S SGN . . . B 2 -2.623 0.369 7.196 1 69.44 ? O3S SGN 248 A 1 
HETATM 17 S S2 SGN . . . B 2 5.081 2.104 11.634 1 84.74 ? S2 SGN 248 A 1 
HETATM 18 O O4S SGN . . . B 2 6.446 1.707 11.367 1 86.69 ? O4S SGN 248 A 1 
HETATM 19 O O5S SGN . . . B 2 4.804 3.452 11.19 1 85.83 ? O5S SGN 248 A 1 
HETATM 20 O O6S SGN . . . B 2 4.689 1.863 13.009 1 85.16 ? O6S SGN 248 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           20 
#