data_1ZAG # _model_server_result.job_id YIDJKw5lsoOLs6VRzQtaCQ _model_server_result.datetime_utc '2024-11-29 13:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":310}' # _entry.id 1ZAG # _exptl.entry_id 1ZAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZAG _cell.length_a 105.6 _cell.length_b 131.7 _cell.length_c 118.5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,Q 1 1 B,F,K,L,R 2 1 C,G,M,N,S 3 1 D,H,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 2 7 6 NAG MAN C1 O1 . O2 HO2 . sing 7 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 10 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 11 ? 3 6 5 GAL NAG C1 O1 . O4 HO4 . sing 12 ? 3 7 6 SIA GAL C2 O2 . O6 HO6 . sing 13 ? 3 8 3 MAN BMA C1 O1 . O3 HO3 . sing 14 ? 3 9 8 NAG MAN C1 O1 . O2 HO2 . sing 15 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 16 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 17 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 320 NAG 2 n E NAG 2 E 2 NAG A 321 NAG 2 n E BMA 3 E 3 BMA A 322 MAN 2 n E MAN 4 E 4 MAN A 327 MAN 2 n E NAG 5 E 5 NAG A 328 NAG 2 n E MAN 6 E 6 MAN A 323 MAN 2 n E NAG 7 E 7 NAG A 324 NAG 3 n F NAG 1 F 1 NAG B 320 NAG 3 n F NAG 2 F 2 NAG B 321 NAG 3 n F BMA 3 F 3 BMA B 322 MAN 3 n F MAN 4 F 4 MAN B 323 MAN 3 n F NAG 5 F 5 NAG B 324 NAG 3 n F GAL 6 F 6 GAL B 325 GAL 3 n F SIA 7 F 7 SIA B 326 SIA 3 n F MAN 8 F 8 MAN B 327 MAN 3 n F NAG 9 F 9 NAG B 328 NAG 4 n G NAG 1 G 1 NAG C 320 NAG 4 n G NAG 2 G 2 NAG C 321 NAG 5 n H NAG 1 H 1 NAG D 320 NAG 5 n H NAG 2 H 2 NAG D 321 NAG 5 n H BMA 3 H 3 BMA D 322 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 103 1_555 A SG CYS 162 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 201 A CYS 205 1_555 A SG CYS 256 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 B SG CYS 99 B CYS 103 1_555 B SG CYS 162 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 201 B CYS 205 1_555 B SG CYS 256 B CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 C SG CYS 99 C CYS 103 1_555 C SG CYS 162 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 C SG CYS 201 C CYS 205 1_555 C SG CYS 256 C CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 D SG CYS 99 D CYS 103 1_555 D SG CYS 162 D CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 D SG CYS 201 D CYS 205 1_555 D SG CYS 256 D CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A ND2 ASN 85 A ASN 89 1_555 I C1 NAG . A NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 104 A ASN 108 1_555 J C1 NAG . A NAG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 235 A ASN 239 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 B ND2 ASN 85 B ASN 89 1_555 K C1 NAG . B NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 B ND2 ASN 104 B ASN 108 1_555 L C1 NAG . B NAG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 B ND2 ASN 235 B ASN 239 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 C ND2 ASN 85 C ASN 89 1_555 M C1 NAG . C NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale8 C ND2 ASN 104 C ASN 108 1_555 N C1 NAG . C NAG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale9 C ND2 ASN 235 C ASN 239 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 D ND2 ASN 85 D ASN 89 1_555 O C1 NAG . D NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 D ND2 ASN 104 D ASN 108 1_555 P C1 NAG . D NAG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 D ND2 ASN 235 D ASN 239 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale15 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale16 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale17 E O2 MAN . E MAN 4 1_555 E C1 NAG . E NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale18 E O2 MAN . E MAN 6 1_555 E C1 NAG . E NAG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale19 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale20 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale21 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale22 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale23 F O2 MAN . F MAN 4 1_555 F C1 NAG . F NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale24 F O4 NAG . F NAG 5 1_555 F C1 GAL . F GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale25 F O6 GAL . F GAL 6 1_555 F C2 SIA . F SIA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale26 F O2 MAN . F MAN 8 1_555 F C1 NAG . F NAG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale27 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale28 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale29 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 309 n n C1 O1 NAG sing 310 n n C1 O5 NAG sing 311 n n C1 H1 NAG sing 312 n n C2 C3 NAG sing 313 n n C2 N2 NAG sing 314 n n C2 H2 NAG sing 315 n n C3 C4 NAG sing 316 n n C3 O3 NAG sing 317 n n C3 H3 NAG sing 318 n n C4 C5 NAG sing 319 n n C4 O4 NAG sing 320 n n C4 H4 NAG sing 321 n n C5 C6 NAG sing 322 n n C5 O5 NAG sing 323 n n C5 H5 NAG sing 324 n n C6 O6 NAG sing 325 n n C6 H61 NAG sing 326 n n C6 H62 NAG sing 327 n n C7 C8 NAG sing 328 n n C7 N2 NAG sing 329 n n C7 O7 NAG doub 330 n n C8 H81 NAG sing 331 n n C8 H82 NAG sing 332 n n C8 H83 NAG sing 333 n n N2 HN2 NAG sing 334 n n O1 HO1 NAG sing 335 n n O3 HO3 NAG sing 336 n n O4 HO4 NAG sing 337 n n O6 HO6 NAG sing 338 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1ZAG _atom_sites.fract_transf_matrix[1][1] 0.00947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 NAG A 1 300 300 NAG NAG . J 6 NAG A 1 310 310 NAG NAG . K 6 NAG B 1 300 300 NAG NAG . L 6 NAG B 1 310 310 NAG NAG . M 6 NAG C 1 300 300 NAG NAG . N 6 NAG C 1 310 310 NAG NAG . O 6 NAG D 1 300 300 NAG NAG . P 6 NAG D 1 310 310 NAG NAG . Q 7 HOH A 1 400 400 HOH HOH . R 7 HOH B 1 400 400 HOH HOH . S 7 HOH C 1 400 400 HOH HOH . T 7 HOH D 1 400 400 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 6 16.608 117.225 50.378 1 115.44 ? C1 NAG 310 B 1 HETATM 2 C C2 NAG . . . L 6 15.235 117.888 50.558 1 114.04 ? C2 NAG 310 B 1 HETATM 3 C C3 NAG . . . L 6 15.365 119.249 51.245 1 115.12 ? C3 NAG 310 B 1 HETATM 4 C C4 NAG . . . L 6 16.228 119.158 52.511 1 119.63 ? C4 NAG 310 B 1 HETATM 5 C C5 NAG . . . L 6 17.557 118.455 52.193 1 118.82 ? C5 NAG 310 B 1 HETATM 6 C C6 NAG . . . L 6 18.436 118.262 53.414 1 117.49 ? C6 NAG 310 B 1 HETATM 7 C C7 NAG . . . L 6 13.471 117.454 48.983 1 107.73 ? C7 NAG 310 B 1 HETATM 8 C C8 NAG . . . L 6 12.875 117.697 47.602 1 103.97 ? C8 NAG 310 B 1 HETATM 9 N N2 NAG . . . L 6 14.61 118.073 49.265 1 109.08 ? N2 NAG 310 B 1 HETATM 10 O O3 NAG . . . L 6 14.071 119.719 51.587 1 116.39 ? O3 NAG 310 B 1 HETATM 11 O O4 NAG . . . L 6 16.479 120.467 53.017 1 113.95 ? O4 NAG 310 B 1 HETATM 12 O O5 NAG . . . L 6 17.301 117.148 51.633 1 117.09 ? O5 NAG 310 B 1 HETATM 13 O O6 NAG . . . L 6 18.622 119.487 54.111 1 120.27 ? O6 NAG 310 B 1 HETATM 14 O O7 NAG . . . L 6 12.9 116.71 49.784 1 105.35 ? O7 NAG 310 B 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #