data_1ZAU # _model_server_result.job_id fy5M2f45YsRhZOUb8x9zAQ _model_server_result.datetime_utc '2024-12-21 12:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1ZAU # _exptl.entry_id 1ZAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZAU _cell.length_a 95.8 _cell.length_b 95.8 _cell.length_c 208.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1ZAU _atom_sites.fract_transf_matrix[1][1] 0.010438 _atom_sites.fract_transf_matrix[1][2] 0.006027 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 400 400 AMP AMP . C 3 HOH A 1 401 1 HOH TIP . C 3 HOH A 2 402 2 HOH TIP . C 3 HOH A 3 403 3 HOH TIP . C 3 HOH A 4 404 4 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -14.186 43.382 70.076 1 38.56 ? P AMP 400 A 1 HETATM 2 O O1P AMP . . . B 2 -13.884 42.01 69.285 1 38.56 ? O1P AMP 400 A 1 HETATM 3 O O3P AMP . . . B 2 -14.894 44.415 69.312 1 38.56 ? O3P AMP 400 A 1 HETATM 4 O O5' AMP . . . B 2 -12.898 43.754 70.545 1 38.56 ? O5' AMP 400 A 1 HETATM 5 C C5' AMP . . . B 2 -11.82 44.716 70.677 1 38.56 ? C5' AMP 400 A 1 HETATM 6 C C4' AMP . . . B 2 -10.645 44.197 71.449 1 38.56 ? C4' AMP 400 A 1 HETATM 7 O O4' AMP . . . B 2 -10.141 43.067 70.693 1 38.56 ? O4' AMP 400 A 1 HETATM 8 C C3' AMP . . . B 2 -9.431 45.089 71.576 1 38.56 ? C3' AMP 400 A 1 HETATM 9 O O3' AMP . . . B 2 -9.59 45.868 72.787 1 38.56 ? O3' AMP 400 A 1 HETATM 10 C C2' AMP . . . B 2 -8.3 44.085 71.568 1 38.56 ? C2' AMP 400 A 1 HETATM 11 O O2' AMP . . . B 2 -7.927 43.629 72.872 1 38.56 ? O2' AMP 400 A 1 HETATM 12 C C1' AMP . . . B 2 -8.753 42.929 70.703 1 38.56 ? C1' AMP 400 A 1 HETATM 13 N N9 AMP . . . B 2 -8.144 42.902 69.288 1 38.56 ? N9 AMP 400 A 1 HETATM 14 C C8 AMP . . . B 2 -8.05 41.765 68.559 1 38.56 ? C8 AMP 400 A 1 HETATM 15 N N7 AMP . . . B 2 -7.502 41.917 67.359 1 38.56 ? N7 AMP 400 A 1 HETATM 16 C C5 AMP . . . B 2 -7.226 43.225 67.307 1 38.56 ? C5 AMP 400 A 1 HETATM 17 C C6 AMP . . . B 2 -6.618 44.044 66.256 1 38.56 ? C6 AMP 400 A 1 HETATM 18 N N6 AMP . . . B 2 -6.211 43.606 65.121 1 38.56 ? N6 AMP 400 A 1 HETATM 19 N N1 AMP . . . B 2 -6.486 45.414 66.567 1 38.56 ? N1 AMP 400 A 1 HETATM 20 C C2 AMP . . . B 2 -6.907 45.978 67.793 1 38.56 ? C2 AMP 400 A 1 HETATM 21 N N3 AMP . . . B 2 -7.475 45.218 68.772 1 38.56 ? N3 AMP 400 A 1 HETATM 22 C C4 AMP . . . B 2 -7.616 43.883 68.5 1 38.56 ? C4 AMP 400 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 2271 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 22 #