data_1ZAY # _model_server_result.job_id S6j0c4DHLsaplsvh7WLn6g _model_server_result.datetime_utc '2025-01-02 22:46:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":599}' # _entry.id 1ZAY # _exptl.entry_id 1ZAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HYPOXANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZAY _cell.length_a 176.449 _cell.length_b 95.187 _cell.length_c 81.777 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZAY _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DT 9 M DT 707 1_555 A P 1AP 10 M 1AP 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? covale ? covale2 A O3' 1AP 10 M 1AP 708 1_555 A P DT 11 M DT 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? hydrog WATSON-CRICK hydrog1 A N1 DA 2 M DA 700 1_555 A N3 DT 17 M DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 2 M DA 700 1_555 A O4 DT 17 M DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 3 M DC 701 1_555 A N1 DG 16 M DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 3 M DC 701 1_555 A O6 DG 16 M DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 3 M DC 701 1_555 A N2 DG 16 M DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 4 M DG 702 1_555 A N3 DC 15 M DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 4 M DG 702 1_555 A O2 DC 15 M DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 4 M DG 702 1_555 A N4 DC 15 M DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 5 M DA 703 1_555 A N3 DT 14 M DT 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 5 M DA 703 1_555 A O4 DT 14 M DT 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 6 M DA 704 1_555 A N3 DT 13 M DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 6 M DA 704 1_555 A O4 DT 13 M DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 7 M DA 705 1_555 A N3 DT 12 M DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 7 M DA 705 1_555 A O4 DT 12 M DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 8 M DA 706 1_555 A N3 DT 11 M DT 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 8 M DA 706 1_555 A O4 DT 11 M DT 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-1AP MISPAIR' hydrog17 A O2 DT 9 M DT 707 1_555 A N2 1AP 10 M 1AP 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog '1AP-DT MISPAIR' hydrog18 A N1 1AP 10 M 1AP 708 1_555 A O4 DT 9 M DT 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 11 M DT 709 1_555 A N1 DA 8 M DA 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 11 M DT 709 1_555 A N6 DA 8 M DA 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DT 12 M DT 710 1_555 A N1 DA 7 M DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O4 DT 12 M DT 710 1_555 A N6 DA 7 M DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DT 13 M DT 711 1_555 A N1 DA 6 M DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O4 DT 13 M DT 711 1_555 A N6 DA 6 M DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DT 14 M DT 712 1_555 A N1 DA 5 M DA 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O4 DT 14 M DT 712 1_555 A N6 DA 5 M DA 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 15 M DC 713 1_555 A N1 DG 4 M DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 15 M DC 713 1_555 A O6 DG 4 M DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 15 M DC 713 1_555 A N2 DG 4 M DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 16 M DG 714 1_555 A N3 DC 3 M DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 16 M DG 714 1_555 A O2 DC 3 M DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 16 M DG 714 1_555 A N4 DC 3 M DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DT 17 M DT 715 1_555 A N1 DA 2 M DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O4 DT 17 M DT 715 1_555 A N6 DA 2 M DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H4 N4 O' _chem_comp.formula_weight 136.111 _chem_comp.id HPA _chem_comp.mon_nstd_flag . _chem_comp.name HYPOXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HPA sing 341 n y N1 C6 HPA sing 342 n y N1 HN1 HPA sing 343 n n C2 N3 HPA doub 344 n y C2 H2 HPA sing 345 n n N3 C4 HPA sing 346 n y C4 C5 HPA doub 347 n y C4 N9 HPA sing 348 n y C5 C6 HPA sing 349 n y C5 N7 HPA sing 350 n y C6 O6 HPA doub 351 n n N7 C8 HPA sing 352 n y N7 HN7 HPA sing 353 n n C8 N9 HPA doub 354 n y C8 H8 HPA sing 355 n n # _atom_sites.entry_id 1ZAY _atom_sites.fract_transf_matrix[1][1] 0.005667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HPA A 1 599 599 HPA HPA . D 4 HOH A 1 801 801 HOH HOH . D 4 HOH A 2 802 802 HOH HOH . D 4 HOH A 3 803 803 HOH HOH . D 4 HOH A 4 804 804 HOH HOH . D 4 HOH A 5 805 805 HOH HOH . D 4 HOH A 6 806 806 HOH HOH . D 4 HOH A 7 807 807 HOH HOH . D 4 HOH A 8 808 808 HOH HOH . D 4 HOH A 9 809 809 HOH HOH . D 4 HOH A 10 810 810 HOH HOH . D 4 HOH A 11 811 811 HOH HOH . D 4 HOH A 12 812 812 HOH HOH . D 4 HOH A 13 813 813 HOH HOH . D 4 HOH A 14 814 814 HOH HOH . D 4 HOH A 15 815 815 HOH HOH . D 4 HOH A 16 816 816 HOH HOH . D 4 HOH A 17 817 817 HOH HOH . D 4 HOH A 18 818 818 HOH HOH . D 4 HOH A 19 819 819 HOH HOH . D 4 HOH A 20 820 820 HOH HOH . D 4 HOH A 21 821 821 HOH HOH . D 4 HOH A 22 822 822 HOH HOH . D 4 HOH A 23 823 823 HOH HOH . D 4 HOH A 24 824 824 HOH HOH . D 4 HOH A 25 825 825 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HPA . . . C 3 57.199 2.724 -10.946 1 70.63 ? N1 HPA 599 A 1 HETATM 2 C C2 HPA . . . C 3 58.079 2.843 -9.893 1 30.76 ? C2 HPA 599 A 1 HETATM 3 N N3 HPA . . . C 3 58.728 3.958 -9.584 1 76.42 ? N3 HPA 599 A 1 HETATM 4 C C4 HPA . . . C 3 58.431 4.965 -10.439 1 30.11 ? C4 HPA 599 A 1 HETATM 5 C C5 HPA . . . C 3 57.566 4.947 -11.512 1 30.55 ? C5 HPA 599 A 1 HETATM 6 C C6 HPA . . . C 3 56.872 3.753 -11.826 1 37.25 ? C6 HPA 599 A 1 HETATM 7 O O6 HPA . . . C 3 56.069 3.551 -12.746 1 53.41 ? O6 HPA 599 A 1 HETATM 8 N N7 HPA . . . C 3 57.527 6.189 -12.13 1 54.85 ? N7 HPA 599 A 1 HETATM 9 C C8 HPA . . . C 3 58.354 6.921 -11.433 1 44.96 ? C8 HPA 599 A 1 HETATM 10 N N9 HPA . . . C 3 58.935 6.247 -10.386 1 32.7 ? N9 HPA 599 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #