data_1ZD1
#
_model_server_result.job_id            KbuWw6lJbWjOcXqhTq_zTg 
_model_server_result.datetime_utc      '2024-11-19 07:29:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zd1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3000}' 
#
_entry.id    1ZD1 
#
_exptl.entry_id    1ZD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.52 
_cell.angle_gamma         90 
_cell.entry_id            1ZD1 
_cell.length_a            98.938 
_cell.length_b            74.195 
_cell.length_c            85.832 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,C,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1ZD1 
_atom_sites.fract_transf_matrix[1][1]    0.010107 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002808 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL B 1 3000 3000 GOL GOL . 
D 3 HOH A 1 285 1 HOH HOH . 
D 3 HOH A 2 286 2 HOH HOH . 
D 3 HOH A 3 287 3 HOH HOH . 
D 3 HOH A 4 288 4 HOH HOH . 
D 3 HOH A 5 289 5 HOH HOH . 
D 3 HOH A 6 290 6 HOH HOH . 
D 3 HOH A 7 291 7 HOH HOH . 
D 3 HOH A 8 292 8 HOH HOH . 
D 3 HOH A 9 293 10 HOH HOH . 
D 3 HOH A 10 294 11 HOH HOH . 
D 3 HOH A 11 295 12 HOH HOH . 
D 3 HOH A 12 296 13 HOH HOH . 
D 3 HOH A 13 297 14 HOH HOH . 
D 3 HOH A 14 298 15 HOH HOH . 
D 3 HOH A 15 299 16 HOH HOH . 
D 3 HOH A 16 300 17 HOH HOH . 
D 3 HOH A 17 301 18 HOH HOH . 
D 3 HOH A 18 302 19 HOH HOH . 
D 3 HOH A 19 303 20 HOH HOH . 
D 3 HOH A 20 304 21 HOH HOH . 
D 3 HOH A 21 305 22 HOH HOH . 
D 3 HOH A 22 306 23 HOH HOH . 
D 3 HOH A 23 307 24 HOH HOH . 
D 3 HOH A 24 308 25 HOH HOH . 
D 3 HOH A 25 309 26 HOH HOH . 
D 3 HOH A 26 310 27 HOH HOH . 
D 3 HOH A 27 311 28 HOH HOH . 
D 3 HOH A 28 312 29 HOH HOH . 
D 3 HOH A 29 313 31 HOH HOH . 
D 3 HOH A 30 314 34 HOH HOH . 
D 3 HOH A 31 315 37 HOH HOH . 
D 3 HOH A 32 316 38 HOH HOH . 
D 3 HOH A 33 317 39 HOH HOH . 
D 3 HOH A 34 318 40 HOH HOH . 
D 3 HOH A 35 319 41 HOH HOH . 
D 3 HOH A 36 320 42 HOH HOH . 
D 3 HOH A 37 321 43 HOH HOH . 
D 3 HOH A 38 322 44 HOH HOH . 
D 3 HOH A 39 323 46 HOH HOH . 
D 3 HOH A 40 324 47 HOH HOH . 
D 3 HOH A 41 325 48 HOH HOH . 
D 3 HOH A 42 326 50 HOH HOH . 
D 3 HOH A 43 327 51 HOH HOH . 
D 3 HOH A 44 328 52 HOH HOH . 
D 3 HOH A 45 329 53 HOH HOH . 
D 3 HOH A 46 330 55 HOH HOH . 
D 3 HOH A 47 331 56 HOH HOH . 
D 3 HOH A 48 332 58 HOH HOH . 
D 3 HOH A 49 333 59 HOH HOH . 
D 3 HOH A 50 334 60 HOH HOH . 
D 3 HOH A 51 335 62 HOH HOH . 
D 3 HOH A 52 336 63 HOH HOH . 
D 3 HOH A 53 337 64 HOH HOH . 
D 3 HOH A 54 338 66 HOH HOH . 
D 3 HOH A 55 339 69 HOH HOH . 
D 3 HOH A 56 340 70 HOH HOH . 
D 3 HOH A 57 341 71 HOH HOH . 
D 3 HOH A 58 342 72 HOH HOH . 
D 3 HOH A 59 343 73 HOH HOH . 
D 3 HOH A 60 344 74 HOH HOH . 
D 3 HOH A 61 345 75 HOH HOH . 
D 3 HOH A 62 346 76 HOH HOH . 
D 3 HOH A 63 347 77 HOH HOH . 
D 3 HOH A 64 348 78 HOH HOH . 
D 3 HOH A 65 349 79 HOH HOH . 
D 3 HOH A 66 350 81 HOH HOH . 
D 3 HOH A 67 351 83 HOH HOH . 
D 3 HOH A 68 352 84 HOH HOH . 
D 3 HOH A 69 353 87 HOH HOH . 
D 3 HOH A 70 354 88 HOH HOH . 
D 3 HOH A 71 355 91 HOH HOH . 
D 3 HOH A 72 356 95 HOH HOH . 
D 3 HOH A 73 357 101 HOH HOH . 
D 3 HOH A 74 358 103 HOH HOH . 
D 3 HOH A 75 359 105 HOH HOH . 
D 3 HOH A 76 360 107 HOH HOH . 
D 3 HOH A 77 361 109 HOH HOH . 
D 3 HOH A 78 362 110 HOH HOH . 
D 3 HOH A 79 363 111 HOH HOH . 
D 3 HOH A 80 364 113 HOH HOH . 
D 3 HOH A 81 365 114 HOH HOH . 
D 3 HOH A 82 366 116 HOH HOH . 
D 3 HOH A 83 367 117 HOH HOH . 
D 3 HOH A 84 368 118 HOH HOH . 
D 3 HOH A 85 369 119 HOH HOH . 
D 3 HOH A 86 370 120 HOH HOH . 
D 3 HOH A 87 371 122 HOH HOH . 
D 3 HOH A 88 372 123 HOH HOH . 
D 3 HOH A 89 373 125 HOH HOH . 
D 3 HOH A 90 374 126 HOH HOH . 
D 3 HOH A 91 375 129 HOH HOH . 
D 3 HOH A 92 376 131 HOH HOH . 
D 3 HOH A 93 377 133 HOH HOH . 
D 3 HOH A 94 378 134 HOH HOH . 
D 3 HOH A 95 379 135 HOH HOH . 
D 3 HOH A 96 380 136 HOH HOH . 
D 3 HOH A 97 381 138 HOH HOH . 
D 3 HOH A 98 382 139 HOH HOH . 
D 3 HOH A 99 383 142 HOH HOH . 
D 3 HOH A 100 384 144 HOH HOH . 
D 3 HOH A 101 385 149 HOH HOH . 
D 3 HOH A 102 386 150 HOH HOH . 
D 3 HOH A 103 387 151 HOH HOH . 
D 3 HOH A 104 388 152 HOH HOH . 
D 3 HOH A 105 389 155 HOH HOH . 
D 3 HOH A 106 390 156 HOH HOH . 
D 3 HOH A 107 391 158 HOH HOH . 
D 3 HOH A 108 392 161 HOH HOH . 
D 3 HOH A 109 393 165 HOH HOH . 
D 3 HOH A 110 394 166 HOH HOH . 
D 3 HOH A 111 395 167 HOH HOH . 
D 3 HOH A 112 396 168 HOH HOH . 
D 3 HOH A 113 397 169 HOH HOH . 
D 3 HOH A 114 398 170 HOH HOH . 
D 3 HOH A 115 399 171 HOH HOH . 
D 3 HOH A 116 400 172 HOH HOH . 
D 3 HOH A 117 401 174 HOH HOH . 
D 3 HOH A 118 402 175 HOH HOH . 
D 3 HOH A 119 403 178 HOH HOH . 
D 3 HOH A 120 404 179 HOH HOH . 
D 3 HOH A 121 405 180 HOH HOH . 
D 3 HOH A 122 406 183 HOH HOH . 
D 3 HOH A 123 407 184 HOH HOH . 
D 3 HOH A 124 408 185 HOH HOH . 
D 3 HOH A 125 409 186 HOH HOH . 
D 3 HOH A 126 410 187 HOH HOH . 
D 3 HOH A 127 411 189 HOH HOH . 
D 3 HOH A 128 412 193 HOH HOH . 
D 3 HOH A 129 413 194 HOH HOH . 
D 3 HOH A 130 414 197 HOH HOH . 
D 3 HOH A 131 415 199 HOH HOH . 
D 3 HOH A 132 416 200 HOH HOH . 
D 3 HOH A 133 417 202 HOH HOH . 
D 3 HOH A 134 418 204 HOH HOH . 
D 3 HOH A 135 419 205 HOH HOH . 
D 3 HOH A 136 420 206 HOH HOH . 
D 3 HOH A 137 421 207 HOH HOH . 
D 3 HOH A 138 422 208 HOH HOH . 
D 3 HOH A 139 423 216 HOH HOH . 
D 3 HOH A 140 424 217 HOH HOH . 
D 3 HOH A 141 425 219 HOH HOH . 
D 3 HOH A 142 426 220 HOH HOH . 
D 3 HOH A 143 427 222 HOH HOH . 
D 3 HOH A 144 428 223 HOH HOH . 
D 3 HOH A 145 429 225 HOH HOH . 
D 3 HOH A 146 430 229 HOH HOH . 
E 3 HOH B 1 3001 9 HOH HOH . 
E 3 HOH B 2 3002 30 HOH HOH . 
E 3 HOH B 3 3003 32 HOH HOH . 
E 3 HOH B 4 3004 33 HOH HOH . 
E 3 HOH B 5 3005 35 HOH HOH . 
E 3 HOH B 6 3006 36 HOH HOH . 
E 3 HOH B 7 3007 45 HOH HOH . 
E 3 HOH B 8 3008 49 HOH HOH . 
E 3 HOH B 9 3009 54 HOH HOH . 
E 3 HOH B 10 3010 61 HOH HOH . 
E 3 HOH B 11 3011 65 HOH HOH . 
E 3 HOH B 12 3012 67 HOH HOH . 
E 3 HOH B 13 3013 80 HOH HOH . 
E 3 HOH B 14 3014 82 HOH HOH . 
E 3 HOH B 15 3015 85 HOH HOH . 
E 3 HOH B 16 3016 86 HOH HOH . 
E 3 HOH B 17 3017 89 HOH HOH . 
E 3 HOH B 18 3018 90 HOH HOH . 
E 3 HOH B 19 3019 92 HOH HOH . 
E 3 HOH B 20 3020 93 HOH HOH . 
E 3 HOH B 21 3021 94 HOH HOH . 
E 3 HOH B 22 3022 96 HOH HOH . 
E 3 HOH B 23 3023 97 HOH HOH . 
E 3 HOH B 24 3024 98 HOH HOH . 
E 3 HOH B 25 3025 100 HOH HOH . 
E 3 HOH B 26 3026 104 HOH HOH . 
E 3 HOH B 27 3027 106 HOH HOH . 
E 3 HOH B 28 3028 108 HOH HOH . 
E 3 HOH B 29 3029 112 HOH HOH . 
E 3 HOH B 30 3030 115 HOH HOH . 
E 3 HOH B 31 3031 121 HOH HOH . 
E 3 HOH B 32 3032 124 HOH HOH . 
E 3 HOH B 33 3033 127 HOH HOH . 
E 3 HOH B 34 3034 128 HOH HOH . 
E 3 HOH B 35 3035 130 HOH HOH . 
E 3 HOH B 36 3036 132 HOH HOH . 
E 3 HOH B 37 3037 137 HOH HOH . 
E 3 HOH B 38 3038 140 HOH HOH . 
E 3 HOH B 39 3039 141 HOH HOH . 
E 3 HOH B 40 3040 143 HOH HOH . 
E 3 HOH B 41 3041 145 HOH HOH . 
E 3 HOH B 42 3042 147 HOH HOH . 
E 3 HOH B 43 3043 148 HOH HOH . 
E 3 HOH B 44 3044 153 HOH HOH . 
E 3 HOH B 45 3045 154 HOH HOH . 
E 3 HOH B 46 3046 157 HOH HOH . 
E 3 HOH B 47 3047 159 HOH HOH . 
E 3 HOH B 48 3048 162 HOH HOH . 
E 3 HOH B 49 3049 163 HOH HOH . 
E 3 HOH B 50 3050 164 HOH HOH . 
E 3 HOH B 51 3051 173 HOH HOH . 
E 3 HOH B 52 3052 176 HOH HOH . 
E 3 HOH B 53 3053 177 HOH HOH . 
E 3 HOH B 54 3054 181 HOH HOH . 
E 3 HOH B 55 3055 182 HOH HOH . 
E 3 HOH B 56 3056 188 HOH HOH . 
E 3 HOH B 57 3057 190 HOH HOH . 
E 3 HOH B 58 3058 191 HOH HOH . 
E 3 HOH B 59 3059 192 HOH HOH . 
E 3 HOH B 60 3060 195 HOH HOH . 
E 3 HOH B 61 3061 196 HOH HOH . 
E 3 HOH B 62 3062 198 HOH HOH . 
E 3 HOH B 63 3063 201 HOH HOH . 
E 3 HOH B 64 3064 203 HOH HOH . 
E 3 HOH B 65 3065 209 HOH HOH . 
E 3 HOH B 66 3066 210 HOH HOH . 
E 3 HOH B 67 3067 211 HOH HOH . 
E 3 HOH B 68 3068 212 HOH HOH . 
E 3 HOH B 69 3069 213 HOH HOH . 
E 3 HOH B 70 3070 214 HOH HOH . 
E 3 HOH B 71 3071 218 HOH HOH . 
E 3 HOH B 72 3072 221 HOH HOH . 
E 3 HOH B 73 3073 224 HOH HOH . 
E 3 HOH B 74 3074 226 HOH HOH . 
E 3 HOH B 75 3075 227 HOH HOH . 
E 3 HOH B 76 3076 230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -2.516 6.348 37.741 1 60.41 ? C1 GOL 3000 B 1 
HETATM 2 O O1 GOL . . . C 2 -3.012 6.797 39.021 1 60.38 ? O1 GOL 3000 B 1 
HETATM 3 C C2 GOL . . . C 2 -1.553 5.118 37.801 1 58.92 ? C2 GOL 3000 B 1 
HETATM 4 O O2 GOL . . . C 2 -0.854 4.984 36.565 1 58.71 ? O2 GOL 3000 B 1 
HETATM 5 C C3 GOL . . . C 2 -2.251 3.777 38.134 1 56.85 ? C3 GOL 3000 B 1 
HETATM 6 O O3 GOL . . . C 2 -1.357 2.752 38.651 1 54.8 ? O3 GOL 3000 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#