data_1ZD2 # _model_server_result.job_id b-JsTNe7VYO8nmKMJMTtwg _model_server_result.datetime_utc '2024-11-08 09:04:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 1ZD2 # _exptl.entry_id 1ZD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.235 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(CYCLOHEXYLAMINO)CARBONYL]GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZD2 _cell.length_a 92.24 _cell.length_b 92.24 _cell.length_c 243.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.24 0 121.68 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 P ASP 9 1_555 B MG MG . P MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc2 A O ASP 11 P ASP 11 1_555 B MG MG . P MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc3 A OD1 ASP 184 P ASP 184 1_555 B MG MG . P MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc4 A OD1 ASP 185 P ASP 185 1_555 B MG MG . P MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 B MG MG . P MG 800 1_555 C O4 PO4 . P PO4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C9 H16 N2 O3' _chem_comp.formula_weight 200.235 _chem_comp.id NC3 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(CYCLOHEXYLAMINO)CARBONYL]GLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-(3-CYCLOHEXYLURIEDO)-ETHANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 NC3 sing 237 n n C1 C10 NC3 sing 238 n n C1 C14 NC3 sing 239 n n C1 H1 NC3 sing 240 n n N2 C3 NC3 sing 241 n n N2 HN2 NC3 sing 242 n n C3 N4 NC3 sing 243 n n C3 O8 NC3 doub 244 n n N4 C5 NC3 sing 245 n n N4 HN4 NC3 sing 246 n n C5 C6 NC3 sing 247 n n C5 H51 NC3 sing 248 n n C5 H52 NC3 sing 249 n n C6 O7 NC3 sing 250 n n C6 O9 NC3 doub 251 n n O7 HO7 NC3 sing 252 n n C10 C11 NC3 sing 253 n n C10 H101 NC3 sing 254 n n C10 H102 NC3 sing 255 n n C11 C12 NC3 sing 256 n n C11 H111 NC3 sing 257 n n C11 H112 NC3 sing 258 n n C12 C13 NC3 sing 259 n n C12 H121 NC3 sing 260 n n C12 H122 NC3 sing 261 n n C13 C14 NC3 sing 262 n n C13 H131 NC3 sing 263 n n C13 H132 NC3 sing 264 n n C14 H141 NC3 sing 265 n n C14 H142 NC3 sing 266 n n # _atom_sites.entry_id 1ZD2 _atom_sites.fract_transf_matrix[1][1] 0.010841 _atom_sites.fract_transf_matrix[1][2] 0.006259 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG P 1 800 800 MG MG2 . C 3 PO4 P 1 900 900 PO4 PO4 . D 4 NC3 P 1 700 700 NC3 NC1 . E 5 HOH P 1 600 600 HOH WAT . E 5 HOH P 2 601 601 HOH WAT . E 5 HOH P 3 602 602 HOH WAT . E 5 HOH P 4 603 603 HOH WAT . E 5 HOH P 5 604 604 HOH WAT . E 5 HOH P 6 605 605 HOH WAT . E 5 HOH P 7 606 606 HOH WAT . E 5 HOH P 8 607 607 HOH WAT . E 5 HOH P 9 608 608 HOH WAT . E 5 HOH P 10 609 609 HOH WAT . E 5 HOH P 11 610 610 HOH WAT . E 5 HOH P 12 611 611 HOH WAT . E 5 HOH P 13 612 612 HOH WAT . E 5 HOH P 14 613 613 HOH WAT . E 5 HOH P 15 614 614 HOH WAT . E 5 HOH P 16 615 615 HOH WAT . E 5 HOH P 17 616 616 HOH WAT . E 5 HOH P 18 617 617 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NC3 . . . D 4 -18.003 -9.645 67.374 1 72.71 ? C1 NC3 700 P 1 HETATM 2 N N2 NC3 . . . D 4 -18.128 -9.086 65.977 1 72.71 ? N2 NC3 700 P 1 HETATM 3 C C3 NC3 . . . D 4 -17.31 -8.103 65.377 1 72.71 ? C3 NC3 700 P 1 HETATM 4 N N4 NC3 . . . D 4 -17.655 -7.752 64.06 1 72.71 ? N4 NC3 700 P 1 HETATM 5 C C5 NC3 . . . D 4 -16.928 -6.718 63.258 1 72.71 ? C5 NC3 700 P 1 HETATM 6 C C6 NC3 . . . D 4 -17.555 -6.649 61.844 1 72.71 ? C6 NC3 700 P 1 HETATM 7 O O7 NC3 . . . D 4 -17.185 -5.558 61.155 1 72.71 ? O7 NC3 700 P 1 HETATM 8 O O8 NC3 . . . D 4 -16.386 -7.555 65.961 1 72.71 ? O8 NC3 700 P 1 HETATM 9 O O9 NC3 . . . D 4 -18.295 -7.481 61.371 1 72.71 ? O9 NC3 700 P 1 HETATM 10 C C10 NC3 . . . D 4 -18.536 -11.11 67.422 1 72.71 ? C10 NC3 700 P 1 HETATM 11 C C11 NC3 . . . D 4 -18.428 -11.734 68.843 1 72.71 ? C11 NC3 700 P 1 HETATM 12 C C12 NC3 . . . D 4 -16.971 -11.653 69.389 1 72.71 ? C12 NC3 700 P 1 HETATM 13 C C13 NC3 . . . D 4 -16.427 -10.193 69.33 1 72.71 ? C13 NC3 700 P 1 HETATM 14 C C14 NC3 . . . D 4 -16.536 -9.61 67.895 1 72.71 ? C14 NC3 700 P 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #