data_1ZD3
#
_model_server_result.job_id            U0ZMInhLSGawBoozfWe1BA 
_model_server_result.datetime_utc      '2024-11-08 09:07:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":790}' 
#
_entry.id    1ZD3 
#
_exptl.entry_id    1ZD3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              228.288 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-{[(CYCLOHEXYLAMINO)CARBONYL]AMINO}BUTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1ZD3 
_cell.length_a            92.41 
_cell.length_b            92.41 
_cell.length_c            243.316 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.41 0 121.658 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc4 F O HOH . A HOH 721 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc5 B MG MG . A MG 800 1_555 C O3 PO4 . A PO4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C11 H20 N2 O3' 
_chem_comp.formula_weight    228.288 
_chem_comp.id                NC4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-{[(CYCLOHEXYLAMINO)CARBONYL]AMINO}BUTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '4-(3-CYCLOHEXYLURIEDO)-BUTYRIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 NC4 sing 480 n n 
C1 C12 NC4 sing 481 n n 
C1 C16 NC4 sing 482 n n 
C1 H1 NC4 sing 483 n n 
N2 C3 NC4 sing 484 n n 
N2 HN2 NC4 sing 485 n n 
C3 N4 NC4 sing 486 n n 
C3 O10 NC4 doub 487 n n 
N4 C5 NC4 sing 488 n n 
N4 HN4 NC4 sing 489 n n 
C5 C6 NC4 sing 490 n n 
C5 H51 NC4 sing 491 n n 
C5 H52 NC4 sing 492 n n 
C6 C7 NC4 sing 493 n n 
C6 H61 NC4 sing 494 n n 
C6 H62 NC4 sing 495 n n 
C7 C8 NC4 sing 496 n n 
C7 H71 NC4 sing 497 n n 
C7 H72 NC4 sing 498 n n 
C8 O9 NC4 sing 499 n n 
C8 O11 NC4 doub 500 n n 
O9 HO9 NC4 sing 501 n n 
C12 C13 NC4 sing 502 n n 
C12 H121 NC4 sing 503 n n 
C12 H122 NC4 sing 504 n n 
C13 C14 NC4 sing 505 n n 
C13 H131 NC4 sing 506 n n 
C13 H132 NC4 sing 507 n n 
C14 C15 NC4 sing 508 n n 
C14 H141 NC4 sing 509 n n 
C14 H142 NC4 sing 510 n n 
C15 C16 NC4 sing 511 n n 
C15 H151 NC4 sing 512 n n 
C15 H152 NC4 sing 513 n n 
C16 H161 NC4 sing 514 n n 
C16 H162 NC4 sing 515 n n 
#
_atom_sites.entry_id                     1ZD3 
_atom_sites.fract_transf_matrix[1][1]    0.010821 
_atom_sites.fract_transf_matrix[1][2]    0.006248 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 800 800 MG MG . 
C 3 PO4 A 1 900 900 PO4 PO4 . 
D 4 15P A 1 780 780 15P 15P . 
E 5 NC4 A 1 790 790 NC4 NC4 . 
F 6 HOH A 1 600 600 HOH WAT . 
F 6 HOH A 2 601 601 HOH WAT . 
F 6 HOH A 3 602 602 HOH WAT . 
F 6 HOH A 4 603 603 HOH WAT . 
F 6 HOH A 5 604 604 HOH WAT . 
F 6 HOH A 6 605 605 HOH WAT . 
F 6 HOH A 7 606 606 HOH WAT . 
F 6 HOH A 8 607 607 HOH WAT . 
F 6 HOH A 9 608 608 HOH WAT . 
F 6 HOH A 10 609 609 HOH WAT . 
F 6 HOH A 11 610 610 HOH WAT . 
F 6 HOH A 12 611 611 HOH WAT . 
F 6 HOH A 13 612 612 HOH WAT . 
F 6 HOH A 14 613 613 HOH WAT . 
F 6 HOH A 15 614 614 HOH WAT . 
F 6 HOH A 16 615 615 HOH WAT . 
F 6 HOH A 17 616 616 HOH WAT . 
F 6 HOH A 18 617 617 HOH WAT . 
F 6 HOH A 19 618 618 HOH WAT . 
F 6 HOH A 20 619 619 HOH WAT . 
F 6 HOH A 21 620 620 HOH WAT . 
F 6 HOH A 22 621 621 HOH WAT . 
F 6 HOH A 23 622 622 HOH WAT . 
F 6 HOH A 24 623 623 HOH WAT . 
F 6 HOH A 25 624 624 HOH WAT . 
F 6 HOH A 26 625 625 HOH WAT . 
F 6 HOH A 27 626 626 HOH WAT . 
F 6 HOH A 28 627 627 HOH WAT . 
F 6 HOH A 29 628 628 HOH WAT . 
F 6 HOH A 30 629 629 HOH WAT . 
F 6 HOH A 31 630 630 HOH WAT . 
F 6 HOH A 32 631 631 HOH WAT . 
F 6 HOH A 33 632 632 HOH WAT . 
F 6 HOH A 34 633 633 HOH WAT . 
F 6 HOH A 35 634 634 HOH WAT . 
F 6 HOH A 36 635 635 HOH WAT . 
F 6 HOH A 37 636 636 HOH WAT . 
F 6 HOH A 38 637 637 HOH WAT . 
F 6 HOH A 39 638 638 HOH WAT . 
F 6 HOH A 40 639 639 HOH WAT . 
F 6 HOH A 41 640 640 HOH WAT . 
F 6 HOH A 42 641 641 HOH WAT . 
F 6 HOH A 43 642 642 HOH WAT . 
F 6 HOH A 44 643 643 HOH WAT . 
F 6 HOH A 45 644 644 HOH WAT . 
F 6 HOH A 46 645 645 HOH WAT . 
F 6 HOH A 47 646 646 HOH WAT . 
F 6 HOH A 48 647 647 HOH WAT . 
F 6 HOH A 49 648 648 HOH WAT . 
F 6 HOH A 50 649 649 HOH WAT . 
F 6 HOH A 51 650 650 HOH WAT . 
F 6 HOH A 52 651 651 HOH WAT . 
F 6 HOH A 53 652 652 HOH WAT . 
F 6 HOH A 54 653 653 HOH WAT . 
F 6 HOH A 55 654 654 HOH WAT . 
F 6 HOH A 56 655 655 HOH WAT . 
F 6 HOH A 57 656 656 HOH WAT . 
F 6 HOH A 58 657 657 HOH WAT . 
F 6 HOH A 59 658 658 HOH WAT . 
F 6 HOH A 60 659 659 HOH WAT . 
F 6 HOH A 61 660 660 HOH WAT . 
F 6 HOH A 62 661 661 HOH WAT . 
F 6 HOH A 63 662 662 HOH WAT . 
F 6 HOH A 64 663 663 HOH WAT . 
F 6 HOH A 65 664 664 HOH WAT . 
F 6 HOH A 66 665 665 HOH WAT . 
F 6 HOH A 67 666 666 HOH WAT . 
F 6 HOH A 68 667 667 HOH WAT . 
F 6 HOH A 69 668 668 HOH WAT . 
F 6 HOH A 70 669 669 HOH WAT . 
F 6 HOH A 71 670 670 HOH WAT . 
F 6 HOH A 72 671 671 HOH WAT . 
F 6 HOH A 73 672 672 HOH WAT . 
F 6 HOH A 74 673 673 HOH WAT . 
F 6 HOH A 75 674 674 HOH WAT . 
F 6 HOH A 76 675 675 HOH WAT . 
F 6 HOH A 77 676 676 HOH WAT . 
F 6 HOH A 78 677 677 HOH WAT . 
F 6 HOH A 79 678 678 HOH WAT . 
F 6 HOH A 80 679 679 HOH WAT . 
F 6 HOH A 81 680 680 HOH WAT . 
F 6 HOH A 82 681 681 HOH WAT . 
F 6 HOH A 83 682 682 HOH WAT . 
F 6 HOH A 84 683 683 HOH WAT . 
F 6 HOH A 85 684 684 HOH WAT . 
F 6 HOH A 86 685 685 HOH WAT . 
F 6 HOH A 87 686 686 HOH WAT . 
F 6 HOH A 88 687 687 HOH WAT . 
F 6 HOH A 89 688 688 HOH WAT . 
F 6 HOH A 90 689 689 HOH WAT . 
F 6 HOH A 91 690 690 HOH WAT . 
F 6 HOH A 92 691 691 HOH WAT . 
F 6 HOH A 93 692 692 HOH WAT . 
F 6 HOH A 94 693 693 HOH WAT . 
F 6 HOH A 95 694 694 HOH WAT . 
F 6 HOH A 96 695 695 HOH WAT . 
F 6 HOH A 97 696 696 HOH WAT . 
F 6 HOH A 98 697 697 HOH WAT . 
F 6 HOH A 99 698 698 HOH WAT . 
F 6 HOH A 100 699 699 HOH WAT . 
F 6 HOH A 101 700 700 HOH WAT . 
F 6 HOH A 102 701 701 HOH WAT . 
F 6 HOH A 103 702 702 HOH WAT . 
F 6 HOH A 104 703 703 HOH WAT . 
F 6 HOH A 105 704 704 HOH WAT . 
F 6 HOH A 106 705 705 HOH WAT . 
F 6 HOH A 107 706 706 HOH WAT . 
F 6 HOH A 108 707 707 HOH WAT . 
F 6 HOH A 109 708 708 HOH WAT . 
F 6 HOH A 110 709 709 HOH WAT . 
F 6 HOH A 111 710 710 HOH WAT . 
F 6 HOH A 112 711 711 HOH WAT . 
F 6 HOH A 113 712 712 HOH WAT . 
F 6 HOH A 114 713 713 HOH WAT . 
F 6 HOH A 115 714 714 HOH WAT . 
F 6 HOH A 116 715 715 HOH WAT . 
F 6 HOH A 117 716 716 HOH WAT . 
F 6 HOH A 118 717 717 HOH WAT . 
F 6 HOH A 119 718 718 HOH WAT . 
F 6 HOH A 120 719 719 HOH WAT . 
F 6 HOH A 121 720 720 HOH WAT . 
F 6 HOH A 122 721 721 HOH WAT . 
F 6 HOH A 123 722 722 HOH WAT . 
F 6 HOH A 124 723 723 HOH WAT . 
F 6 HOH A 125 724 724 HOH WAT . 
F 6 HOH A 126 725 725 HOH WAT . 
F 6 HOH A 127 726 726 HOH WAT . 
F 6 HOH A 128 727 727 HOH WAT . 
F 6 HOH A 129 728 728 HOH WAT . 
F 6 HOH A 130 729 729 HOH WAT . 
F 6 HOH A 131 730 730 HOH WAT . 
F 6 HOH A 132 731 731 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NC4 . . . E 5 -17.621 -7.361 63.066 1 37 ? C1 NC4 790 A 1 
HETATM 2 N N2 NC4 . . . E 5 -18.02 -7.76 64.421 1 38.1 ? N2 NC4 790 A 1 
HETATM 3 C C3 NC4 . . . E 5 -17.779 -8.993 64.963 1 39.64 ? C3 NC4 790 A 1 
HETATM 4 N N4 NC4 . . . E 5 -18.227 -9.162 66.244 1 42.06 ? N4 NC4 790 A 1 
HETATM 5 C C5 NC4 . . . E 5 -18.032 -10.41 66.99 1 45.4 ? C5 NC4 790 A 1 
HETATM 6 C C6 NC4 . . . E 5 -18.158 -10.123 68.492 1 49.18 ? C6 NC4 790 A 1 
HETATM 7 C C7 NC4 . . . E 5 -16.956 -10.658 69.297 1 52.2 ? C7 NC4 790 A 1 
HETATM 8 C C8 NC4 . . . E 5 -17.063 -10.393 70.797 1 54.03 ? C8 NC4 790 A 1 
HETATM 9 O O9 NC4 . . . E 5 -15.995 -10.873 71.468 1 54.54 ? O9 NC4 790 A 1 
HETATM 10 O O10 NC4 . . . E 5 -17.204 -9.861 64.366 1 38.98 ? O10 NC4 790 A 1 
HETATM 11 O O11 NC4 . . . E 5 -17.961 -9.831 71.377 1 54.79 ? O11 NC4 790 A 1 
HETATM 12 C C12 NC4 . . . E 5 -18.601 -6.301 62.494 1 36.07 ? C12 NC4 790 A 1 
HETATM 13 C C13 NC4 . . . E 5 -18.189 -5.869 61.07 1 36.21 ? C13 NC4 790 A 1 
HETATM 14 C C14 NC4 . . . E 5 -16.741 -5.323 61.053 1 36.14 ? C14 NC4 790 A 1 
HETATM 15 C C15 NC4 . . . E 5 -15.73 -6.336 61.654 1 36.88 ? C15 NC4 790 A 1 
HETATM 16 C C16 NC4 . . . E 5 -16.178 -6.78 63.076 1 36.62 ? C16 NC4 790 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           16 
#