data_1ZD3
#
_model_server_result.job_id            i_MOpdjKI97x-qwXQaU4Bg 
_model_server_result.datetime_utc      '2024-11-08 09:13:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":800}' 
#
_entry.id    1ZD3 
#
_exptl.entry_id    1ZD3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1ZD3 
_cell.length_a            92.41 
_cell.length_b            92.41 
_cell.length_c            243.316 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.41 0 121.658 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc4 F O HOH . A HOH 721 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc5 B MG MG . A MG 800 1_555 C O3 PO4 . A PO4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1ZD3 
_atom_sites.fract_transf_matrix[1][1]    0.010821 
_atom_sites.fract_transf_matrix[1][2]    0.006248 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 800 800 MG MG . 
C 3 PO4 A 1 900 900 PO4 PO4 . 
D 4 15P A 1 780 780 15P 15P . 
E 5 NC4 A 1 790 790 NC4 NC4 . 
F 6 HOH A 1 600 600 HOH WAT . 
F 6 HOH A 2 601 601 HOH WAT . 
F 6 HOH A 3 602 602 HOH WAT . 
F 6 HOH A 4 603 603 HOH WAT . 
F 6 HOH A 5 604 604 HOH WAT . 
F 6 HOH A 6 605 605 HOH WAT . 
F 6 HOH A 7 606 606 HOH WAT . 
F 6 HOH A 8 607 607 HOH WAT . 
F 6 HOH A 9 608 608 HOH WAT . 
F 6 HOH A 10 609 609 HOH WAT . 
F 6 HOH A 11 610 610 HOH WAT . 
F 6 HOH A 12 611 611 HOH WAT . 
F 6 HOH A 13 612 612 HOH WAT . 
F 6 HOH A 14 613 613 HOH WAT . 
F 6 HOH A 15 614 614 HOH WAT . 
F 6 HOH A 16 615 615 HOH WAT . 
F 6 HOH A 17 616 616 HOH WAT . 
F 6 HOH A 18 617 617 HOH WAT . 
F 6 HOH A 19 618 618 HOH WAT . 
F 6 HOH A 20 619 619 HOH WAT . 
F 6 HOH A 21 620 620 HOH WAT . 
F 6 HOH A 22 621 621 HOH WAT . 
F 6 HOH A 23 622 622 HOH WAT . 
F 6 HOH A 24 623 623 HOH WAT . 
F 6 HOH A 25 624 624 HOH WAT . 
F 6 HOH A 26 625 625 HOH WAT . 
F 6 HOH A 27 626 626 HOH WAT . 
F 6 HOH A 28 627 627 HOH WAT . 
F 6 HOH A 29 628 628 HOH WAT . 
F 6 HOH A 30 629 629 HOH WAT . 
F 6 HOH A 31 630 630 HOH WAT . 
F 6 HOH A 32 631 631 HOH WAT . 
F 6 HOH A 33 632 632 HOH WAT . 
F 6 HOH A 34 633 633 HOH WAT . 
F 6 HOH A 35 634 634 HOH WAT . 
F 6 HOH A 36 635 635 HOH WAT . 
F 6 HOH A 37 636 636 HOH WAT . 
F 6 HOH A 38 637 637 HOH WAT . 
F 6 HOH A 39 638 638 HOH WAT . 
F 6 HOH A 40 639 639 HOH WAT . 
F 6 HOH A 41 640 640 HOH WAT . 
F 6 HOH A 42 641 641 HOH WAT . 
F 6 HOH A 43 642 642 HOH WAT . 
F 6 HOH A 44 643 643 HOH WAT . 
F 6 HOH A 45 644 644 HOH WAT . 
F 6 HOH A 46 645 645 HOH WAT . 
F 6 HOH A 47 646 646 HOH WAT . 
F 6 HOH A 48 647 647 HOH WAT . 
F 6 HOH A 49 648 648 HOH WAT . 
F 6 HOH A 50 649 649 HOH WAT . 
F 6 HOH A 51 650 650 HOH WAT . 
F 6 HOH A 52 651 651 HOH WAT . 
F 6 HOH A 53 652 652 HOH WAT . 
F 6 HOH A 54 653 653 HOH WAT . 
F 6 HOH A 55 654 654 HOH WAT . 
F 6 HOH A 56 655 655 HOH WAT . 
F 6 HOH A 57 656 656 HOH WAT . 
F 6 HOH A 58 657 657 HOH WAT . 
F 6 HOH A 59 658 658 HOH WAT . 
F 6 HOH A 60 659 659 HOH WAT . 
F 6 HOH A 61 660 660 HOH WAT . 
F 6 HOH A 62 661 661 HOH WAT . 
F 6 HOH A 63 662 662 HOH WAT . 
F 6 HOH A 64 663 663 HOH WAT . 
F 6 HOH A 65 664 664 HOH WAT . 
F 6 HOH A 66 665 665 HOH WAT . 
F 6 HOH A 67 666 666 HOH WAT . 
F 6 HOH A 68 667 667 HOH WAT . 
F 6 HOH A 69 668 668 HOH WAT . 
F 6 HOH A 70 669 669 HOH WAT . 
F 6 HOH A 71 670 670 HOH WAT . 
F 6 HOH A 72 671 671 HOH WAT . 
F 6 HOH A 73 672 672 HOH WAT . 
F 6 HOH A 74 673 673 HOH WAT . 
F 6 HOH A 75 674 674 HOH WAT . 
F 6 HOH A 76 675 675 HOH WAT . 
F 6 HOH A 77 676 676 HOH WAT . 
F 6 HOH A 78 677 677 HOH WAT . 
F 6 HOH A 79 678 678 HOH WAT . 
F 6 HOH A 80 679 679 HOH WAT . 
F 6 HOH A 81 680 680 HOH WAT . 
F 6 HOH A 82 681 681 HOH WAT . 
F 6 HOH A 83 682 682 HOH WAT . 
F 6 HOH A 84 683 683 HOH WAT . 
F 6 HOH A 85 684 684 HOH WAT . 
F 6 HOH A 86 685 685 HOH WAT . 
F 6 HOH A 87 686 686 HOH WAT . 
F 6 HOH A 88 687 687 HOH WAT . 
F 6 HOH A 89 688 688 HOH WAT . 
F 6 HOH A 90 689 689 HOH WAT . 
F 6 HOH A 91 690 690 HOH WAT . 
F 6 HOH A 92 691 691 HOH WAT . 
F 6 HOH A 93 692 692 HOH WAT . 
F 6 HOH A 94 693 693 HOH WAT . 
F 6 HOH A 95 694 694 HOH WAT . 
F 6 HOH A 96 695 695 HOH WAT . 
F 6 HOH A 97 696 696 HOH WAT . 
F 6 HOH A 98 697 697 HOH WAT . 
F 6 HOH A 99 698 698 HOH WAT . 
F 6 HOH A 100 699 699 HOH WAT . 
F 6 HOH A 101 700 700 HOH WAT . 
F 6 HOH A 102 701 701 HOH WAT . 
F 6 HOH A 103 702 702 HOH WAT . 
F 6 HOH A 104 703 703 HOH WAT . 
F 6 HOH A 105 704 704 HOH WAT . 
F 6 HOH A 106 705 705 HOH WAT . 
F 6 HOH A 107 706 706 HOH WAT . 
F 6 HOH A 108 707 707 HOH WAT . 
F 6 HOH A 109 708 708 HOH WAT . 
F 6 HOH A 110 709 709 HOH WAT . 
F 6 HOH A 111 710 710 HOH WAT . 
F 6 HOH A 112 711 711 HOH WAT . 
F 6 HOH A 113 712 712 HOH WAT . 
F 6 HOH A 114 713 713 HOH WAT . 
F 6 HOH A 115 714 714 HOH WAT . 
F 6 HOH A 116 715 715 HOH WAT . 
F 6 HOH A 117 716 716 HOH WAT . 
F 6 HOH A 118 717 717 HOH WAT . 
F 6 HOH A 119 718 718 HOH WAT . 
F 6 HOH A 120 719 719 HOH WAT . 
F 6 HOH A 121 720 720 HOH WAT . 
F 6 HOH A 122 721 721 HOH WAT . 
F 6 HOH A 123 722 722 HOH WAT . 
F 6 HOH A 124 723 723 HOH WAT . 
F 6 HOH A 125 724 724 HOH WAT . 
F 6 HOH A 126 725 725 HOH WAT . 
F 6 HOH A 127 726 726 HOH WAT . 
F 6 HOH A 128 727 727 HOH WAT . 
F 6 HOH A 129 728 728 HOH WAT . 
F 6 HOH A 130 729 729 HOH WAT . 
F 6 HOH A 131 730 730 HOH WAT . 
F 6 HOH A 132 731 731 HOH WAT . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -57.711 
_atom_site.Cartn_y               10.911 
_atom_site.Cartn_z               92.209 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        28.53 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           800 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#