data_1ZD4 # _model_server_result.job_id fNjwNttniGOZ7RHT1993pg _model_server_result.datetime_utc '2024-10-18 16:29:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 1ZD4 # _exptl.entry_id 1ZD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.341 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-{[(CYCLOHEXYLAMINO)CARBONYL]AMINO}HEXANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZD4 _cell.length_a 92.97 _cell.length_b 92.97 _cell.length_c 246.12 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 46.485 80.514382 287.14 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc4 B MG MG . A MG 800 1_555 C O1 PO4 . A PO4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? # _chem_comp.formula 'C13 H24 N2 O3' _chem_comp.formula_weight 256.341 _chem_comp.id NC6 _chem_comp.mon_nstd_flag . _chem_comp.name '6-{[(CYCLOHEXYLAMINO)CARBONYL]AMINO}HEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-(3-CYCLOHEXYLURIEDO)-HEXANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 NC6 sing 237 n n C1 C14 NC6 sing 238 n n C1 C18 NC6 sing 239 n n C1 H1 NC6 sing 240 n n N2 C3 NC6 sing 241 n n N2 HN2 NC6 sing 242 n n C3 N4 NC6 sing 243 n n C3 O10 NC6 doub 244 n n N4 C5 NC6 sing 245 n n N4 HN4 NC6 sing 246 n n C5 C6 NC6 sing 247 n n C5 H51 NC6 sing 248 n n C5 H52 NC6 sing 249 n n C6 C7 NC6 sing 250 n n C6 H61 NC6 sing 251 n n C6 H62 NC6 sing 252 n n C7 C8 NC6 sing 253 n n C7 H71 NC6 sing 254 n n C7 H72 NC6 sing 255 n n C8 C9 NC6 sing 256 n n C8 H81 NC6 sing 257 n n C8 H82 NC6 sing 258 n n C9 C11 NC6 sing 259 n n C9 H91 NC6 sing 260 n n C9 H92 NC6 sing 261 n n C11 O12 NC6 sing 262 n n C11 O13 NC6 doub 263 n n O12 H12 NC6 sing 264 n n C14 C15 NC6 sing 265 n n C14 H141 NC6 sing 266 n n C14 H142 NC6 sing 267 n n C15 C16 NC6 sing 268 n n C15 H151 NC6 sing 269 n n C15 H152 NC6 sing 270 n n C16 C17 NC6 sing 271 n n C16 H161 NC6 sing 272 n n C16 H162 NC6 sing 273 n n C17 C18 NC6 sing 274 n n C17 H171 NC6 sing 275 n n C17 H172 NC6 sing 276 n n C18 H181 NC6 sing 277 n n C18 H182 NC6 sing 278 n n # _atom_sites.entry_id 1ZD4 _atom_sites.fract_transf_matrix[1][1] 0.010756 _atom_sites.fract_transf_matrix[1][2] 0.00621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 800 800 MG MG . C 3 PO4 A 1 900 900 PO4 PO4 . D 4 NC6 A 1 700 700 NC6 NC6 . E 5 HOH A 1 600 600 HOH WAT . E 5 HOH A 2 601 601 HOH WAT . E 5 HOH A 3 602 602 HOH WAT . E 5 HOH A 4 603 603 HOH WAT . E 5 HOH A 5 604 604 HOH WAT . E 5 HOH A 6 605 605 HOH WAT . E 5 HOH A 7 606 606 HOH WAT . E 5 HOH A 8 607 607 HOH WAT . E 5 HOH A 9 608 608 HOH WAT . E 5 HOH A 10 609 609 HOH WAT . E 5 HOH A 11 610 610 HOH WAT . E 5 HOH A 12 611 611 HOH WAT . E 5 HOH A 13 612 612 HOH WAT . E 5 HOH A 14 613 613 HOH WAT . E 5 HOH A 15 614 614 HOH WAT . E 5 HOH A 16 615 615 HOH WAT . E 5 HOH A 17 616 616 HOH WAT . E 5 HOH A 18 617 617 HOH WAT . E 5 HOH A 19 618 618 HOH WAT . E 5 HOH A 20 619 619 HOH WAT . E 5 HOH A 21 620 620 HOH WAT . E 5 HOH A 22 621 621 HOH WAT . E 5 HOH A 23 622 622 HOH WAT . E 5 HOH A 24 623 623 HOH WAT . E 5 HOH A 25 624 624 HOH WAT . E 5 HOH A 26 625 625 HOH WAT . E 5 HOH A 27 626 626 HOH WAT . E 5 HOH A 28 627 627 HOH WAT . E 5 HOH A 29 628 628 HOH WAT . E 5 HOH A 30 629 629 HOH WAT . E 5 HOH A 31 630 630 HOH WAT . E 5 HOH A 32 631 631 HOH WAT . E 5 HOH A 33 632 632 HOH WAT . E 5 HOH A 34 633 633 HOH WAT . E 5 HOH A 35 634 634 HOH WAT . E 5 HOH A 36 635 635 HOH WAT . E 5 HOH A 37 636 636 HOH WAT . E 5 HOH A 38 637 637 HOH WAT . E 5 HOH A 39 638 638 HOH WAT . E 5 HOH A 40 639 639 HOH WAT . E 5 HOH A 41 640 640 HOH WAT . E 5 HOH A 42 641 641 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NC6 . . . D 4 15.435 11.545 141.514 1 47.53 ? C1 NC6 700 A 1 HETATM 2 N N2 NC6 . . . D 4 16.178 11.947 140.3 1 47.53 ? N2 NC6 700 A 1 HETATM 3 C C3 NC6 . . . D 4 16.844 11.056 139.479 1 47.53 ? C3 NC6 700 A 1 HETATM 4 N N4 NC6 . . . D 4 17.268 11.578 138.273 1 47.53 ? N4 NC6 700 A 1 HETATM 5 C C5 NC6 . . . D 4 17.96 10.774 137.256 1 47.53 ? C5 NC6 700 A 1 HETATM 6 C C6 NC6 . . . D 4 17.033 10.633 136.043 1 47.53 ? C6 NC6 700 A 1 HETATM 7 C C7 NC6 . . . D 4 17.642 9.805 134.908 1 47.53 ? C7 NC6 700 A 1 HETATM 8 C C8 NC6 . . . D 4 16.667 9.699 133.726 1 47.53 ? C8 NC6 700 A 1 HETATM 9 C C9 NC6 . . . D 4 17.235 8.869 132.563 1 47.53 ? C9 NC6 700 A 1 HETATM 10 O O10 NC6 . . . D 4 17.023 9.897 139.786 1 47.53 ? O10 NC6 700 A 1 HETATM 11 C C11 NC6 . . . D 4 16.281 8.744 131.378 1 47.53 ? C11 NC6 700 A 1 HETATM 12 O O12 NC6 . . . D 4 16.826 8.006 130.384 1 47.53 ? O12 NC6 700 A 1 HETATM 13 O O13 NC6 . . . D 4 15.165 9.219 131.276 1 47.53 ? O13 NC6 700 A 1 HETATM 14 C C14 NC6 . . . D 4 15.197 12.77 142.434 1 47.53 ? C14 NC6 700 A 1 HETATM 15 C C15 NC6 . . . D 4 14.41 12.377 143.709 1 47.53 ? C15 NC6 700 A 1 HETATM 16 C C16 NC6 . . . D 4 13.064 11.681 143.363 1 47.53 ? C16 NC6 700 A 1 HETATM 17 C C17 NC6 . . . D 4 13.261 10.489 142.39 1 47.53 ? C17 NC6 700 A 1 HETATM 18 C C18 NC6 . . . D 4 14.063 10.912 141.131 1 47.53 ? C18 NC6 700 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #