data_1ZD4
#
_model_server_result.job_id            Uk7bLz9BYw6zKrz341uoCQ 
_model_server_result.datetime_utc      '2024-10-18 16:26:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zd4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":800}' 
#
_entry.id    1ZD4 
#
_exptl.entry_id    1ZD4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1ZD4 
_cell.length_a            92.97 
_cell.length_b            92.97 
_cell.length_c            246.12 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZD4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 46.485 80.514382 287.14 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc4 B MG MG . A MG 800 1_555 C O1 PO4 . A PO4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1ZD4 
_atom_sites.fract_transf_matrix[1][1]    0.010756 
_atom_sites.fract_transf_matrix[1][2]    0.00621 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 800 800 MG MG . 
C 3 PO4 A 1 900 900 PO4 PO4 . 
D 4 NC6 A 1 700 700 NC6 NC6 . 
E 5 HOH A 1 600 600 HOH WAT . 
E 5 HOH A 2 601 601 HOH WAT . 
E 5 HOH A 3 602 602 HOH WAT . 
E 5 HOH A 4 603 603 HOH WAT . 
E 5 HOH A 5 604 604 HOH WAT . 
E 5 HOH A 6 605 605 HOH WAT . 
E 5 HOH A 7 606 606 HOH WAT . 
E 5 HOH A 8 607 607 HOH WAT . 
E 5 HOH A 9 608 608 HOH WAT . 
E 5 HOH A 10 609 609 HOH WAT . 
E 5 HOH A 11 610 610 HOH WAT . 
E 5 HOH A 12 611 611 HOH WAT . 
E 5 HOH A 13 612 612 HOH WAT . 
E 5 HOH A 14 613 613 HOH WAT . 
E 5 HOH A 15 614 614 HOH WAT . 
E 5 HOH A 16 615 615 HOH WAT . 
E 5 HOH A 17 616 616 HOH WAT . 
E 5 HOH A 18 617 617 HOH WAT . 
E 5 HOH A 19 618 618 HOH WAT . 
E 5 HOH A 20 619 619 HOH WAT . 
E 5 HOH A 21 620 620 HOH WAT . 
E 5 HOH A 22 621 621 HOH WAT . 
E 5 HOH A 23 622 622 HOH WAT . 
E 5 HOH A 24 623 623 HOH WAT . 
E 5 HOH A 25 624 624 HOH WAT . 
E 5 HOH A 26 625 625 HOH WAT . 
E 5 HOH A 27 626 626 HOH WAT . 
E 5 HOH A 28 627 627 HOH WAT . 
E 5 HOH A 29 628 628 HOH WAT . 
E 5 HOH A 30 629 629 HOH WAT . 
E 5 HOH A 31 630 630 HOH WAT . 
E 5 HOH A 32 631 631 HOH WAT . 
E 5 HOH A 33 632 632 HOH WAT . 
E 5 HOH A 34 633 633 HOH WAT . 
E 5 HOH A 35 634 634 HOH WAT . 
E 5 HOH A 36 635 635 HOH WAT . 
E 5 HOH A 37 636 636 HOH WAT . 
E 5 HOH A 38 637 637 HOH WAT . 
E 5 HOH A 39 638 638 HOH WAT . 
E 5 HOH A 40 639 639 HOH WAT . 
E 5 HOH A 41 640 640 HOH WAT . 
E 5 HOH A 42 641 641 HOH WAT . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               19.619 
_atom_site.Cartn_y               55.604 
_atom_site.Cartn_z               111.761 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        38.95 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           800 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#