data_1ZD5 # _model_server_result.job_id rhtPJPXZb-pUC1Sic7SefA _model_server_result.datetime_utc '2024-11-08 08:36:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 1ZD5 # _exptl.entry_id 1ZD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZD5 _cell.length_a 92.52 _cell.length_b 92.52 _cell.length_c 243.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.52 0 121.7 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc4 B MG MG . A MG 800 1_555 C O3 PO4 . A PO4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 305 n n P O2 PO4 sing 306 n n P O3 PO4 sing 307 n n P O4 PO4 sing 308 n n # _atom_sites.entry_id 1ZD5 _atom_sites.fract_transf_matrix[1][1] 0.010808 _atom_sites.fract_transf_matrix[1][2] 0.00624 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 800 800 MG MG2 . C 3 PO4 A 1 900 900 PO4 PO4 . D 4 NC7 A 1 700 700 NC7 C6I . E 5 HOH A 1 600 600 HOH WAT . E 5 HOH A 2 601 601 HOH WAT . E 5 HOH A 3 602 602 HOH WAT . E 5 HOH A 4 603 603 HOH WAT . E 5 HOH A 5 604 604 HOH WAT . E 5 HOH A 6 605 605 HOH WAT . E 5 HOH A 7 606 606 HOH WAT . E 5 HOH A 8 607 607 HOH WAT . E 5 HOH A 9 608 608 HOH WAT . E 5 HOH A 10 609 609 HOH WAT . E 5 HOH A 11 610 610 HOH WAT . E 5 HOH A 12 611 611 HOH WAT . E 5 HOH A 13 612 612 HOH WAT . E 5 HOH A 14 613 613 HOH WAT . E 5 HOH A 15 614 614 HOH WAT . E 5 HOH A 16 615 615 HOH WAT . E 5 HOH A 17 616 616 HOH WAT . E 5 HOH A 18 617 617 HOH WAT . E 5 HOH A 19 618 618 HOH WAT . E 5 HOH A 20 619 619 HOH WAT . E 5 HOH A 21 620 620 HOH WAT . E 5 HOH A 22 621 621 HOH WAT . E 5 HOH A 23 622 622 HOH WAT . E 5 HOH A 24 623 623 HOH WAT . E 5 HOH A 25 624 624 HOH WAT . E 5 HOH A 26 625 625 HOH WAT . E 5 HOH A 27 626 626 HOH WAT . E 5 HOH A 28 627 627 HOH WAT . E 5 HOH A 29 628 628 HOH WAT . E 5 HOH A 30 629 629 HOH WAT . E 5 HOH A 31 630 630 HOH WAT . E 5 HOH A 32 631 631 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -59.672 9.549 89.837 1 108.83 ? P PO4 900 A 1 HETATM 2 O O1 PO4 . . . C 3 -59.462 8.151 90.283 1 108.38 ? O1 PO4 900 A 1 HETATM 3 O O2 PO4 . . . C 3 -58.564 9.959 88.939 1 108.72 ? O2 PO4 900 A 1 HETATM 4 O O3 PO4 . . . C 3 -59.713 10.451 91.02 1 109.2 ? O3 PO4 900 A 1 HETATM 5 O O4 PO4 . . . C 3 -60.954 9.637 89.104 1 110.08 ? O4 PO4 900 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #