data_1ZDF # _model_server_result.job_id cT49awZxotq5uzi89KkXsA _model_server_result.datetime_utc '2024-11-17 13:44:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1ZDF # _exptl.entry_id 1ZDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZDF _cell.length_a 58.89 _cell.length_b 105.38 _cell.length_c 122.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -105.38 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 122 A ASP 101 1_555 B MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc2 A OD1 ASP 124 A ASP 103 1_555 B MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 A OD2 ASP 124 A ASP 103 1_555 B MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc4 A NE2 HIS 232 A HIS 211 1_555 B MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc5 B MN MN . A MN 400 1_555 D O1B UPG . A UPG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc6 B MN MN . A MN 400 1_555 D O1A UPG . A UPG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 1ZDF _atom_sites.fract_transf_matrix[1][1] 0.016981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 400 400 MN MN . C 3 SO4 A 1 401 401 SO4 SO4 . D 4 UPG A 1 411 411 UPG UPG . E 5 HOH A 1 412 1 HOH HOH . E 5 HOH A 2 413 2 HOH HOH . E 5 HOH A 3 414 3 HOH HOH . E 5 HOH A 4 415 4 HOH HOH . E 5 HOH A 5 416 5 HOH HOH . E 5 HOH A 6 417 6 HOH HOH . E 5 HOH A 7 418 7 HOH HOH . E 5 HOH A 8 419 8 HOH HOH . E 5 HOH A 9 420 9 HOH HOH . E 5 HOH A 10 421 10 HOH HOH . E 5 HOH A 11 422 11 HOH HOH . E 5 HOH A 12 423 12 HOH HOH . E 5 HOH A 13 424 13 HOH HOH . E 5 HOH A 14 425 14 HOH HOH . E 5 HOH A 15 426 15 HOH HOH . E 5 HOH A 16 427 16 HOH HOH . E 5 HOH A 17 428 17 HOH HOH . E 5 HOH A 18 429 18 HOH HOH . E 5 HOH A 19 430 19 HOH HOH . E 5 HOH A 20 431 20 HOH HOH . E 5 HOH A 21 432 22 HOH HOH . E 5 HOH A 22 433 23 HOH HOH . E 5 HOH A 23 434 24 HOH HOH . E 5 HOH A 24 435 25 HOH HOH . E 5 HOH A 25 436 26 HOH HOH . E 5 HOH A 26 437 27 HOH HOH . E 5 HOH A 27 438 28 HOH HOH . E 5 HOH A 28 439 29 HOH HOH . E 5 HOH A 29 440 30 HOH HOH . E 5 HOH A 30 441 31 HOH HOH . E 5 HOH A 31 442 32 HOH HOH . E 5 HOH A 32 443 33 HOH HOH . E 5 HOH A 33 444 34 HOH HOH . E 5 HOH A 34 445 35 HOH HOH . E 5 HOH A 35 446 36 HOH HOH . E 5 HOH A 36 447 37 HOH HOH . E 5 HOH A 37 448 38 HOH HOH . E 5 HOH A 38 449 39 HOH HOH . E 5 HOH A 39 450 40 HOH HOH . E 5 HOH A 40 451 41 HOH HOH . E 5 HOH A 41 452 42 HOH HOH . E 5 HOH A 42 453 43 HOH HOH . E 5 HOH A 43 454 44 HOH HOH . E 5 HOH A 44 455 45 HOH HOH . E 5 HOH A 45 456 46 HOH HOH . E 5 HOH A 46 457 47 HOH HOH . E 5 HOH A 47 458 48 HOH HOH . E 5 HOH A 48 459 49 HOH HOH . E 5 HOH A 49 460 50 HOH HOH . E 5 HOH A 50 461 51 HOH HOH . E 5 HOH A 51 462 52 HOH HOH . E 5 HOH A 52 463 53 HOH HOH . E 5 HOH A 53 464 54 HOH HOH . E 5 HOH A 54 465 55 HOH HOH . E 5 HOH A 55 466 56 HOH HOH . E 5 HOH A 56 467 57 HOH HOH . E 5 HOH A 57 468 58 HOH HOH . E 5 HOH A 58 469 59 HOH HOH . E 5 HOH A 59 470 60 HOH HOH . E 5 HOH A 60 471 61 HOH HOH . E 5 HOH A 61 472 62 HOH HOH . E 5 HOH A 62 473 63 HOH HOH . E 5 HOH A 63 474 64 HOH HOH . E 5 HOH A 64 475 65 HOH HOH . E 5 HOH A 65 476 66 HOH HOH . E 5 HOH A 66 477 67 HOH HOH . E 5 HOH A 67 478 68 HOH HOH . E 5 HOH A 68 479 69 HOH HOH . E 5 HOH A 69 480 70 HOH HOH . E 5 HOH A 70 481 71 HOH HOH . E 5 HOH A 71 482 72 HOH HOH . E 5 HOH A 72 483 73 HOH HOH . E 5 HOH A 73 484 74 HOH HOH . E 5 HOH A 74 485 75 HOH HOH . E 5 HOH A 75 486 76 HOH HOH . E 5 HOH A 76 487 77 HOH HOH . E 5 HOH A 77 488 78 HOH HOH . E 5 HOH A 78 489 79 HOH HOH . E 5 HOH A 79 490 80 HOH HOH . E 5 HOH A 80 491 82 HOH HOH . E 5 HOH A 81 492 84 HOH HOH . E 5 HOH A 82 493 85 HOH HOH . E 5 HOH A 83 494 86 HOH HOH . E 5 HOH A 84 495 87 HOH HOH . E 5 HOH A 85 496 88 HOH HOH . E 5 HOH A 86 497 89 HOH HOH . E 5 HOH A 87 498 90 HOH HOH . E 5 HOH A 88 499 91 HOH HOH . E 5 HOH A 89 500 92 HOH HOH . E 5 HOH A 90 501 93 HOH HOH . E 5 HOH A 91 502 95 HOH HOH . E 5 HOH A 92 503 97 HOH HOH . E 5 HOH A 93 504 98 HOH HOH . E 5 HOH A 94 505 99 HOH HOH . E 5 HOH A 95 506 100 HOH HOH . E 5 HOH A 96 507 101 HOH HOH . E 5 HOH A 97 508 103 HOH HOH . E 5 HOH A 98 509 104 HOH HOH . E 5 HOH A 99 510 105 HOH HOH . E 5 HOH A 100 511 106 HOH HOH . E 5 HOH A 101 512 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 0 -52.71 61.11 0.25 18.3 ? S SO4 401 A 1 HETATM 2 O O1 SO4 . . . C 3 0.867 -52.025 61.934 1 25.29 ? O1 SO4 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 2 #