data_1ZDM
#
_model_server_result.job_id            I-RNfiAkT_O08sUWcC4QKw 
_model_server_result.datetime_utc      '2025-03-26 21:39:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zdm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":192}' 
#
_entry.id    1ZDM 
#
_exptl.entry_id    1ZDM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZDM 
_cell.length_a            53.73 
_cell.length_b            53.82 
_cell.length_c            161.17 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZDM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 56 A SER 56 1_555 A N BFD 57 A BFD 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C BFD 57 A BFD 57 1_555 A N TRP 58 A TRP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C SER 56 B SER 56 1_555 B N BFD 57 B BFD 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 B C BFD 57 B BFD 57 1_555 B N TRP 58 B TRP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 C MN MN . A MN 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc2 A F1 BFD 57 A BFD 57 1_555 C MN MN . A MN 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc3 A OD2 BFD 57 A BFD 57 1_555 C MN MN . A MN 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc4 A O ASN 59 A ASN 59 1_555 C MN MN . A MN 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc5 C MN MN . A MN 192 1_555 G O HOH . A HOH 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc6 C MN MN . A MN 192 1_555 G O HOH . A HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc7 B OD1 ASP 13 B ASP 13 1_555 E MN MN . B MN 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc8 B F1 BFD 57 B BFD 57 1_555 E MN MN . B MN 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc9 B OD2 BFD 57 B BFD 57 1_555 E MN MN . B MN 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc10 B O ASN 59 B ASN 59 1_555 E MN MN . B MN 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc11 E MN MN . B MN 191 1_555 H O HOH . B HOH 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc12 E MN MN . B MN 191 1_555 H O HOH . B HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1ZDM 
_atom_sites.fract_transf_matrix[1][1]    0.018612 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01858 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 192 2 MN MN . 
D 3 XE A 1 181 1 XE XE . 
E 2 MN B 1 191 1 MN MN . 
F 3 XE B 1 182 2 XE XE . 
G 4 HOH A 1 193 2 HOH HOH . 
G 4 HOH A 2 194 4 HOH HOH . 
G 4 HOH A 3 195 5 HOH HOH . 
G 4 HOH A 4 196 9 HOH HOH . 
G 4 HOH A 5 197 10 HOH HOH . 
G 4 HOH A 6 198 12 HOH HOH . 
G 4 HOH A 7 199 13 HOH HOH . 
G 4 HOH A 8 200 14 HOH HOH . 
G 4 HOH A 9 201 15 HOH HOH . 
G 4 HOH A 10 202 16 HOH HOH . 
G 4 HOH A 11 203 19 HOH HOH . 
G 4 HOH A 12 204 23 HOH HOH . 
G 4 HOH A 13 205 25 HOH HOH . 
G 4 HOH A 14 206 27 HOH HOH . 
G 4 HOH A 15 207 28 HOH HOH . 
G 4 HOH A 16 208 32 HOH HOH . 
G 4 HOH A 17 209 36 HOH HOH . 
G 4 HOH A 18 210 38 HOH HOH . 
G 4 HOH A 19 211 40 HOH HOH . 
G 4 HOH A 20 212 42 HOH HOH . 
G 4 HOH A 21 213 44 HOH HOH . 
G 4 HOH A 22 214 46 HOH HOH . 
G 4 HOH A 23 215 47 HOH HOH . 
G 4 HOH A 24 216 48 HOH HOH . 
G 4 HOH A 25 217 49 HOH HOH . 
G 4 HOH A 26 218 52 HOH HOH . 
G 4 HOH A 27 219 54 HOH HOH . 
G 4 HOH A 28 220 55 HOH HOH . 
G 4 HOH A 29 221 59 HOH HOH . 
G 4 HOH A 30 222 62 HOH HOH . 
G 4 HOH A 31 223 65 HOH HOH . 
G 4 HOH A 32 224 67 HOH HOH . 
G 4 HOH A 33 225 68 HOH HOH . 
G 4 HOH A 34 226 69 HOH HOH . 
G 4 HOH A 35 227 70 HOH HOH . 
G 4 HOH A 36 228 71 HOH HOH . 
G 4 HOH A 37 229 73 HOH HOH . 
G 4 HOH A 38 230 75 HOH HOH . 
G 4 HOH A 39 231 78 HOH HOH . 
G 4 HOH A 40 232 80 HOH HOH . 
G 4 HOH A 41 233 82 HOH HOH . 
G 4 HOH A 42 234 83 HOH HOH . 
G 4 HOH A 43 235 84 HOH HOH . 
G 4 HOH A 44 236 85 HOH HOH . 
G 4 HOH A 45 237 88 HOH HOH . 
G 4 HOH A 46 238 89 HOH HOH . 
G 4 HOH A 47 239 90 HOH HOH . 
G 4 HOH A 48 240 94 HOH HOH . 
G 4 HOH A 49 241 95 HOH HOH . 
G 4 HOH A 50 242 96 HOH HOH . 
G 4 HOH A 51 243 98 HOH HOH . 
G 4 HOH A 52 244 99 HOH HOH . 
G 4 HOH A 53 245 101 HOH HOH . 
G 4 HOH A 54 246 102 HOH HOH . 
G 4 HOH A 55 247 103 HOH HOH . 
G 4 HOH A 56 248 104 HOH HOH . 
G 4 HOH A 57 249 105 HOH HOH . 
G 4 HOH A 58 250 109 HOH HOH . 
G 4 HOH A 59 251 110 HOH HOH . 
G 4 HOH A 60 252 111 HOH HOH . 
G 4 HOH A 61 253 113 HOH HOH . 
G 4 HOH A 62 254 114 HOH HOH . 
G 4 HOH A 63 255 115 HOH HOH . 
G 4 HOH A 64 256 119 HOH HOH . 
G 4 HOH A 65 257 120 HOH HOH . 
G 4 HOH A 66 258 121 HOH HOH . 
G 4 HOH A 67 259 123 HOH HOH . 
G 4 HOH A 68 260 126 HOH HOH . 
G 4 HOH A 69 261 127 HOH HOH . 
G 4 HOH A 70 262 130 HOH HOH . 
G 4 HOH A 71 263 131 HOH HOH . 
G 4 HOH A 72 264 133 HOH HOH . 
G 4 HOH A 73 265 134 HOH HOH . 
G 4 HOH A 74 266 135 HOH HOH . 
G 4 HOH A 75 267 136 HOH HOH . 
G 4 HOH A 76 268 137 HOH HOH . 
G 4 HOH A 77 269 139 HOH HOH . 
G 4 HOH A 78 270 141 HOH HOH . 
G 4 HOH A 79 271 143 HOH HOH . 
G 4 HOH A 80 272 144 HOH HOH . 
G 4 HOH A 81 273 147 HOH HOH . 
G 4 HOH A 82 274 148 HOH HOH . 
G 4 HOH A 83 275 149 HOH HOH . 
G 4 HOH A 84 276 154 HOH HOH . 
G 4 HOH A 85 277 155 HOH HOH . 
G 4 HOH A 86 278 156 HOH HOH . 
G 4 HOH A 87 279 158 HOH HOH . 
G 4 HOH A 88 280 159 HOH HOH . 
G 4 HOH A 89 281 160 HOH HOH . 
G 4 HOH A 90 282 161 HOH HOH . 
G 4 HOH A 91 283 162 HOH HOH . 
G 4 HOH A 92 284 163 HOH HOH . 
G 4 HOH A 93 285 165 HOH HOH . 
G 4 HOH A 94 286 166 HOH HOH . 
G 4 HOH A 95 287 167 HOH HOH . 
G 4 HOH A 96 288 168 HOH HOH . 
G 4 HOH A 97 289 169 HOH HOH . 
G 4 HOH A 98 290 172 HOH HOH . 
H 4 HOH B 1 192 1 HOH HOH . 
H 4 HOH B 2 193 3 HOH HOH . 
H 4 HOH B 3 194 6 HOH HOH . 
H 4 HOH B 4 195 7 HOH HOH . 
H 4 HOH B 5 196 8 HOH HOH . 
H 4 HOH B 6 197 17 HOH HOH . 
H 4 HOH B 7 198 18 HOH HOH . 
H 4 HOH B 8 199 20 HOH HOH . 
H 4 HOH B 9 200 21 HOH HOH . 
H 4 HOH B 10 201 24 HOH HOH . 
H 4 HOH B 11 202 26 HOH HOH . 
H 4 HOH B 12 203 29 HOH HOH . 
H 4 HOH B 13 204 30 HOH HOH . 
H 4 HOH B 14 205 31 HOH HOH . 
H 4 HOH B 15 206 33 HOH HOH . 
H 4 HOH B 16 207 34 HOH HOH . 
H 4 HOH B 17 208 35 HOH HOH . 
H 4 HOH B 18 209 37 HOH HOH . 
H 4 HOH B 19 210 39 HOH HOH . 
H 4 HOH B 20 211 41 HOH HOH . 
H 4 HOH B 21 212 43 HOH HOH . 
H 4 HOH B 22 213 45 HOH HOH . 
H 4 HOH B 23 214 50 HOH HOH . 
H 4 HOH B 24 215 51 HOH HOH . 
H 4 HOH B 25 216 53 HOH HOH . 
H 4 HOH B 26 217 56 HOH HOH . 
H 4 HOH B 27 218 57 HOH HOH . 
H 4 HOH B 28 219 58 HOH HOH . 
H 4 HOH B 29 220 60 HOH HOH . 
H 4 HOH B 30 221 61 HOH HOH . 
H 4 HOH B 31 222 63 HOH HOH . 
H 4 HOH B 32 223 64 HOH HOH . 
H 4 HOH B 33 224 66 HOH HOH . 
H 4 HOH B 34 225 72 HOH HOH . 
H 4 HOH B 35 226 74 HOH HOH . 
H 4 HOH B 36 227 77 HOH HOH . 
H 4 HOH B 37 228 79 HOH HOH . 
H 4 HOH B 38 229 81 HOH HOH . 
H 4 HOH B 39 230 86 HOH HOH . 
H 4 HOH B 40 231 87 HOH HOH . 
H 4 HOH B 41 232 91 HOH HOH . 
H 4 HOH B 42 233 92 HOH HOH . 
H 4 HOH B 43 234 93 HOH HOH . 
H 4 HOH B 44 235 97 HOH HOH . 
H 4 HOH B 45 236 100 HOH HOH . 
H 4 HOH B 46 237 106 HOH HOH . 
H 4 HOH B 47 238 107 HOH HOH . 
H 4 HOH B 48 239 108 HOH HOH . 
H 4 HOH B 49 240 116 HOH HOH . 
H 4 HOH B 50 241 117 HOH HOH . 
H 4 HOH B 51 242 118 HOH HOH . 
H 4 HOH B 52 243 122 HOH HOH . 
H 4 HOH B 53 244 124 HOH HOH . 
H 4 HOH B 54 245 125 HOH HOH . 
H 4 HOH B 55 246 128 HOH HOH . 
H 4 HOH B 56 247 129 HOH HOH . 
H 4 HOH B 57 248 132 HOH HOH . 
H 4 HOH B 58 249 138 HOH HOH . 
H 4 HOH B 59 250 140 HOH HOH . 
H 4 HOH B 60 251 142 HOH HOH . 
H 4 HOH B 61 252 145 HOH HOH . 
H 4 HOH B 62 253 146 HOH HOH . 
H 4 HOH B 63 254 150 HOH HOH . 
H 4 HOH B 64 255 151 HOH HOH . 
H 4 HOH B 65 256 152 HOH HOH . 
H 4 HOH B 66 257 153 HOH HOH . 
H 4 HOH B 67 258 157 HOH HOH . 
H 4 HOH B 68 259 164 HOH HOH . 
H 4 HOH B 69 260 170 HOH HOH . 
H 4 HOH B 70 261 171 HOH HOH . 
H 4 HOH B 71 262 173 HOH HOH . 
H 4 HOH B 72 263 174 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               60.802 
_atom_site.Cartn_y               49.906 
_atom_site.Cartn_z               37.326 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           192 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#