data_1ZDN
#
_model_server_result.job_id            5LNnAvgKKxWyucByoMTPHw 
_model_server_result.datetime_utc      '2024-12-26 21:01:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":157}' 
#
_entry.id    1ZDN 
#
_exptl.entry_id    1ZDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1ZDN 
_cell.length_a            115.586 
_cell.length_b            115.586 
_cell.length_c            44.905 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA,PQS dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
A,B,C,D,E,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 120 A CYS 118 1_555 B SG CYS 120 B CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc1 A O PRO 125 A PRO 123 1_555 C NA NA . A NA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 A OD1 ASN 126 A ASN 124 1_555 C NA NA . A NA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc3 C NA NA . A NA 157 1_555 E O HOH . A HOH 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc4 C NA NA . A NA 157 1_555 B O PRO 125 B PRO 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc5 C NA NA . A NA 157 1_555 B OD1 ASN 126 B ASN 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc6 B O ASN 38 B ASN 36 1_555 D NA NA . B NA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc7 B O ASP 41 B ASP 39 1_555 D NA NA . B NA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc8 B O ASP 44 B ASP 42 1_555 D NA NA . B NA 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc9 D NA NA . B NA 157 1_555 F O HOH . B HOH 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc10 D NA NA . B NA 157 1_555 F O HOH . B HOH 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1ZDN 
_atom_sites.fract_transf_matrix[1][1]    0.008652 
_atom_sites.fract_transf_matrix[1][2]    0.004995 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 157 1 NA NA . 
D 2 NA B 1 157 2 NA NA . 
E 3 HOH A 1 158 5 HOH HOH . 
E 3 HOH A 2 159 8 HOH HOH . 
E 3 HOH A 3 160 13 HOH HOH . 
E 3 HOH A 4 161 15 HOH HOH . 
E 3 HOH A 5 162 17 HOH HOH . 
E 3 HOH A 6 163 18 HOH HOH . 
E 3 HOH A 7 164 19 HOH HOH . 
E 3 HOH A 8 165 20 HOH HOH . 
E 3 HOH A 9 166 21 HOH HOH . 
E 3 HOH A 10 167 22 HOH HOH . 
E 3 HOH A 11 168 23 HOH HOH . 
E 3 HOH A 12 169 25 HOH HOH . 
E 3 HOH A 13 170 29 HOH HOH . 
E 3 HOH A 14 171 30 HOH HOH . 
E 3 HOH A 15 172 32 HOH HOH . 
E 3 HOH A 16 173 36 HOH HOH . 
E 3 HOH A 17 174 37 HOH HOH . 
E 3 HOH A 18 175 40 HOH HOH . 
E 3 HOH A 19 176 43 HOH HOH . 
E 3 HOH A 20 177 46 HOH HOH . 
E 3 HOH A 21 178 48 HOH HOH . 
E 3 HOH A 22 179 49 HOH HOH . 
E 3 HOH A 23 180 51 HOH HOH . 
E 3 HOH A 24 181 53 HOH HOH . 
E 3 HOH A 25 182 54 HOH HOH . 
E 3 HOH A 26 183 57 HOH HOH . 
E 3 HOH A 27 184 61 HOH HOH . 
E 3 HOH A 28 185 65 HOH HOH . 
E 3 HOH A 29 186 66 HOH HOH . 
E 3 HOH A 30 187 70 HOH HOH . 
E 3 HOH A 31 188 71 HOH HOH . 
E 3 HOH A 32 189 73 HOH HOH . 
E 3 HOH A 33 190 74 HOH HOH . 
E 3 HOH A 34 191 75 HOH HOH . 
E 3 HOH A 35 192 77 HOH HOH . 
E 3 HOH A 36 193 78 HOH HOH . 
E 3 HOH A 37 194 82 HOH HOH . 
E 3 HOH A 38 195 84 HOH HOH . 
E 3 HOH A 39 196 86 HOH HOH . 
E 3 HOH A 40 197 90 HOH HOH . 
E 3 HOH A 41 198 91 HOH HOH . 
E 3 HOH A 42 199 92 HOH HOH . 
E 3 HOH A 43 200 93 HOH HOH . 
E 3 HOH A 44 201 95 HOH HOH . 
F 3 HOH B 1 158 3 HOH HOH . 
F 3 HOH B 2 159 4 HOH HOH . 
F 3 HOH B 3 160 6 HOH HOH . 
F 3 HOH B 4 161 7 HOH HOH . 
F 3 HOH B 5 162 9 HOH HOH . 
F 3 HOH B 6 163 10 HOH HOH . 
F 3 HOH B 7 164 11 HOH HOH . 
F 3 HOH B 8 165 12 HOH HOH . 
F 3 HOH B 9 166 14 HOH HOH . 
F 3 HOH B 10 167 16 HOH HOH . 
F 3 HOH B 11 168 24 HOH HOH . 
F 3 HOH B 12 169 26 HOH HOH . 
F 3 HOH B 13 170 27 HOH HOH . 
F 3 HOH B 14 171 28 HOH HOH . 
F 3 HOH B 15 172 31 HOH HOH . 
F 3 HOH B 16 173 33 HOH HOH . 
F 3 HOH B 17 174 34 HOH HOH . 
F 3 HOH B 18 175 35 HOH HOH . 
F 3 HOH B 19 176 38 HOH HOH . 
F 3 HOH B 20 177 39 HOH HOH . 
F 3 HOH B 21 178 41 HOH HOH . 
F 3 HOH B 22 179 42 HOH HOH . 
F 3 HOH B 23 180 44 HOH HOH . 
F 3 HOH B 24 181 45 HOH HOH . 
F 3 HOH B 25 182 47 HOH HOH . 
F 3 HOH B 26 183 50 HOH HOH . 
F 3 HOH B 27 184 52 HOH HOH . 
F 3 HOH B 28 185 55 HOH HOH . 
F 3 HOH B 29 186 56 HOH HOH . 
F 3 HOH B 30 187 58 HOH HOH . 
F 3 HOH B 31 188 59 HOH HOH . 
F 3 HOH B 32 189 60 HOH HOH . 
F 3 HOH B 33 190 62 HOH HOH . 
F 3 HOH B 34 191 63 HOH HOH . 
F 3 HOH B 35 192 64 HOH HOH . 
F 3 HOH B 36 193 67 HOH HOH . 
F 3 HOH B 37 194 68 HOH HOH . 
F 3 HOH B 38 195 69 HOH HOH . 
F 3 HOH B 39 196 72 HOH HOH . 
F 3 HOH B 40 197 76 HOH HOH . 
F 3 HOH B 41 198 79 HOH HOH . 
F 3 HOH B 42 199 80 HOH HOH . 
F 3 HOH B 43 200 81 HOH HOH . 
F 3 HOH B 44 201 83 HOH HOH . 
F 3 HOH B 45 202 96 HOH HOH . 
F 3 HOH B 46 203 87 HOH HOH . 
F 3 HOH B 47 204 88 HOH HOH . 
F 3 HOH B 48 205 89 HOH HOH . 
F 3 HOH B 49 206 94 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               86.237 
_atom_site.Cartn_y               22.715 
_atom_site.Cartn_z               12.631 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           157 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#