data_1ZDP # _model_server_result.job_id n1BInFlwc_42UqF6TBQ8OQ _model_server_result.datetime_utc '2024-11-09 02:07:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 1ZDP # _exptl.entry_id 1ZDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZDP _cell.length_a 94 _cell.length_b 94 _cell.length_c 132.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZDP _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 57 E ASP 57 1_555 D CA CA . E CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc2 A OD2 ASP 57 E ASP 57 1_555 D CA CA . E CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc3 A OD1 ASP 59 E ASP 59 1_555 D CA CA . E CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 A O GLN 61 E GLN 61 1_555 D CA CA . E CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc5 A OD1 ASP 138 E ASP 138 1_555 B CA CA . E CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc6 A NE2 HIS 142 E HIS 142 1_555 F ZN ZN . E ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc7 A NE2 HIS 146 E HIS 146 1_555 F ZN ZN . E ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc8 A OE1 GLU 166 E GLU 166 1_555 F ZN ZN . E ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc9 A OE1 GLU 177 E GLU 177 1_555 B CA CA . E CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc10 A OE2 GLU 177 E GLU 177 1_555 B CA CA . E CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc11 A OE2 GLU 177 E GLU 177 1_555 C CA CA . E CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 A O ASN 183 E ASN 183 1_555 C CA CA . E CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc13 A OD2 ASP 185 E ASP 185 1_555 B CA CA . E CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc14 A OD1 ASP 185 E ASP 185 1_555 C CA CA . E CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc15 A O GLU 187 E GLU 187 1_555 B CA CA . E CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc16 A OE1 GLU 190 E GLU 190 1_555 B CA CA . E CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc17 A OE2 GLU 190 E GLU 190 1_555 B CA CA . E CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc18 A OE2 GLU 190 E GLU 190 1_555 C CA CA . E CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc19 A O TYR 193 E TYR 193 1_555 E CA CA . E CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc20 A OG1 THR 194 E THR 194 1_555 E CA CA . E CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc21 A O THR 194 E THR 194 1_555 E CA CA . E CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc22 A O ILE 197 E ILE 197 1_555 E CA CA . E CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc23 A OD1 ASP 200 E ASP 200 1_555 E CA CA . E CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc24 H O HOH . E HOH 346 1_555 B CA CA . E CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc25 H O HOH . E HOH 353 1_555 C CA CA . E CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc26 H O HOH . E HOH 354 1_555 E CA CA . E CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc27 H O HOH . E HOH 419 1_555 D CA CA . E CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc28 H O HOH . E HOH 475 1_555 C CA CA . E CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc29 H O HOH . E HOH 480 1_555 E CA CA . E CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc30 H O HOH . E HOH 482 1_555 D CA CA . E CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc31 H O HOH . E HOH 503 1_555 D CA CA . E CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc32 F ZN ZN . E ZN 1005 1_555 G SG1 TIO . E TIO 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZDP _atom_sites.fract_transf_matrix[1][1] 0.010638 _atom_sites.fract_transf_matrix[1][2] 0.006142 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA E 1 1001 1001 CA CA . C 2 CA E 1 1002 1002 CA CA . D 2 CA E 1 1003 1003 CA CA . E 2 CA E 1 1004 1004 CA CA . F 3 ZN E 1 1005 1005 ZN ZN . G 4 TIO E 1 1006 1 TIO TIO . H 5 HOH E 1 331 331 HOH HOH . H 5 HOH E 2 332 332 HOH HOH . H 5 HOH E 3 334 334 HOH HOH . H 5 HOH E 4 335 335 HOH HOH . H 5 HOH E 5 337 337 HOH HOH . H 5 HOH E 6 338 338 HOH HOH . H 5 HOH E 7 339 339 HOH HOH . H 5 HOH E 8 340 340 HOH HOH . H 5 HOH E 9 341 341 HOH HOH . H 5 HOH E 10 342 342 HOH HOH . H 5 HOH E 11 343 343 HOH HOH . H 5 HOH E 12 344 344 HOH HOH . H 5 HOH E 13 345 345 HOH HOH . H 5 HOH E 14 346 346 HOH HOH . H 5 HOH E 15 347 347 HOH HOH . H 5 HOH E 16 348 348 HOH HOH . H 5 HOH E 17 349 349 HOH HOH . H 5 HOH E 18 350 350 HOH HOH . H 5 HOH E 19 351 351 HOH HOH . H 5 HOH E 20 352 352 HOH HOH . H 5 HOH E 21 353 353 HOH HOH . H 5 HOH E 22 354 354 HOH HOH . H 5 HOH E 23 355 355 HOH HOH . H 5 HOH E 24 356 356 HOH HOH . H 5 HOH E 25 357 357 HOH HOH . H 5 HOH E 26 358 358 HOH HOH . H 5 HOH E 27 359 359 HOH HOH . H 5 HOH E 28 361 361 HOH HOH . H 5 HOH E 29 366 366 HOH HOH . H 5 HOH E 30 367 367 HOH HOH . H 5 HOH E 31 368 368 HOH HOH . H 5 HOH E 32 370 370 HOH HOH . H 5 HOH E 33 371 371 HOH HOH . H 5 HOH E 34 373 373 HOH HOH . H 5 HOH E 35 374 374 HOH HOH . H 5 HOH E 36 375 375 HOH HOH . H 5 HOH E 37 376 376 HOH HOH . H 5 HOH E 38 377 377 HOH HOH . H 5 HOH E 39 378 378 HOH HOH . H 5 HOH E 40 379 379 HOH HOH . H 5 HOH E 41 380 380 HOH HOH . H 5 HOH E 42 381 381 HOH HOH . H 5 HOH E 43 383 383 HOH HOH . H 5 HOH E 44 384 384 HOH HOH . H 5 HOH E 45 386 386 HOH HOH . H 5 HOH E 46 387 387 HOH HOH . H 5 HOH E 47 389 389 HOH HOH . H 5 HOH E 48 390 390 HOH HOH . H 5 HOH E 49 391 391 HOH HOH . H 5 HOH E 50 393 393 HOH HOH . H 5 HOH E 51 395 395 HOH HOH . H 5 HOH E 52 397 397 HOH HOH . H 5 HOH E 53 398 398 HOH HOH . H 5 HOH E 54 403 403 HOH HOH . H 5 HOH E 55 404 404 HOH HOH . H 5 HOH E 56 405 405 HOH HOH . H 5 HOH E 57 406 406 HOH HOH . H 5 HOH E 58 407 407 HOH HOH . H 5 HOH E 59 408 408 HOH HOH . H 5 HOH E 60 410 410 HOH HOH . H 5 HOH E 61 412 412 HOH HOH . H 5 HOH E 62 413 413 HOH HOH . H 5 HOH E 63 414 414 HOH HOH . H 5 HOH E 64 415 415 HOH HOH . H 5 HOH E 65 416 416 HOH HOH . H 5 HOH E 66 418 418 HOH HOH . H 5 HOH E 67 419 419 HOH HOH . H 5 HOH E 68 420 420 HOH HOH . H 5 HOH E 69 422 422 HOH HOH . H 5 HOH E 70 423 423 HOH HOH . H 5 HOH E 71 424 424 HOH HOH . H 5 HOH E 72 425 425 HOH HOH . H 5 HOH E 73 426 426 HOH HOH . H 5 HOH E 74 427 427 HOH HOH . H 5 HOH E 75 428 428 HOH HOH . H 5 HOH E 76 431 431 HOH HOH . H 5 HOH E 77 433 433 HOH HOH . H 5 HOH E 78 434 434 HOH HOH . H 5 HOH E 79 438 438 HOH HOH . H 5 HOH E 80 439 439 HOH HOH . H 5 HOH E 81 441 441 HOH HOH . H 5 HOH E 82 444 444 HOH HOH . H 5 HOH E 83 445 445 HOH HOH . H 5 HOH E 84 446 446 HOH HOH . H 5 HOH E 85 448 448 HOH HOH . H 5 HOH E 86 450 450 HOH HOH . H 5 HOH E 87 452 452 HOH HOH . H 5 HOH E 88 454 454 HOH HOH . H 5 HOH E 89 455 455 HOH HOH . H 5 HOH E 90 457 457 HOH HOH . H 5 HOH E 91 459 459 HOH HOH . H 5 HOH E 92 461 461 HOH HOH . H 5 HOH E 93 463 463 HOH HOH . H 5 HOH E 94 464 464 HOH HOH . H 5 HOH E 95 465 465 HOH HOH . H 5 HOH E 96 466 466 HOH HOH . H 5 HOH E 97 467 467 HOH HOH . H 5 HOH E 98 468 468 HOH HOH . H 5 HOH E 99 469 469 HOH HOH . H 5 HOH E 100 470 470 HOH HOH . H 5 HOH E 101 471 471 HOH HOH . H 5 HOH E 102 472 472 HOH HOH . H 5 HOH E 103 474 474 HOH HOH . H 5 HOH E 104 475 475 HOH HOH . H 5 HOH E 105 476 476 HOH HOH . H 5 HOH E 106 477 477 HOH HOH . H 5 HOH E 107 478 478 HOH HOH . H 5 HOH E 108 479 479 HOH HOH . H 5 HOH E 109 480 480 HOH HOH . H 5 HOH E 110 481 481 HOH HOH . H 5 HOH E 111 482 482 HOH HOH . H 5 HOH E 112 483 483 HOH HOH . H 5 HOH E 113 484 484 HOH HOH . H 5 HOH E 114 486 486 HOH HOH . H 5 HOH E 115 487 487 HOH HOH . H 5 HOH E 116 488 488 HOH HOH . H 5 HOH E 117 489 489 HOH HOH . H 5 HOH E 118 490 490 HOH HOH . H 5 HOH E 119 491 491 HOH HOH . H 5 HOH E 120 493 493 HOH HOH . H 5 HOH E 121 494 494 HOH HOH . H 5 HOH E 122 495 495 HOH HOH . H 5 HOH E 123 496 496 HOH HOH . H 5 HOH E 124 501 501 HOH HOH . H 5 HOH E 125 502 502 HOH HOH . H 5 HOH E 126 503 503 HOH HOH . H 5 HOH E 127 504 504 HOH HOH . H 5 HOH E 128 505 505 HOH HOH . H 5 HOH E 129 506 506 HOH HOH . H 5 HOH E 130 507 507 HOH HOH . H 5 HOH E 131 508 508 HOH HOH . H 5 HOH E 132 509 509 HOH HOH . H 5 HOH E 133 510 510 HOH HOH . H 5 HOH E 134 512 512 HOH HOH . H 5 HOH E 135 513 513 HOH HOH . H 5 HOH E 136 514 514 HOH HOH . H 5 HOH E 137 515 515 HOH HOH . H 5 HOH E 138 516 516 HOH HOH . H 5 HOH E 139 518 518 HOH HOH . H 5 HOH E 140 519 519 HOH HOH . H 5 HOH E 141 520 520 HOH HOH . H 5 HOH E 142 521 521 HOH HOH . H 5 HOH E 143 523 523 HOH HOH . H 5 HOH E 144 524 524 HOH HOH . H 5 HOH E 145 525 525 HOH HOH . H 5 HOH E 146 526 526 HOH HOH . H 5 HOH E 147 527 527 HOH HOH . H 5 HOH E 148 528 528 HOH HOH . H 5 HOH E 149 530 530 HOH HOH . H 5 HOH E 150 531 531 HOH HOH . H 5 HOH E 151 532 532 HOH HOH . H 5 HOH E 152 534 534 HOH HOH . H 5 HOH E 153 535 535 HOH HOH . H 5 HOH E 154 536 536 HOH HOH . H 5 HOH E 155 537 537 HOH HOH . H 5 HOH E 156 538 538 HOH HOH . H 5 HOH E 157 539 539 HOH HOH . H 5 HOH E 158 540 540 HOH HOH . H 5 HOH E 159 542 542 HOH HOH . H 5 HOH E 160 543 543 HOH HOH . H 5 HOH E 161 544 544 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.12 _atom_site.Cartn_y 39.8 _atom_site.Cartn_z 10.478 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1004 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #