data_1ZEN # _model_server_result.job_id iwzCsrFsrhYxnXIUZ9QAvg _model_server_result.datetime_utc '2024-11-28 05:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zen # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":359}' # _entry.id 1ZEN # _exptl.entry_id 1ZEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZEN _cell.length_a 78.36 _cell.length_b 78.36 _cell.length_c 290.33 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 48.388333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 109 A ASP 109 1_555 B ZN ZN . A ZN 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc2 A NE2 HIS 110 A HIS 110 1_555 C ZN ZN . A ZN 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc3 A OE2 GLU 172 A GLU 172 1_555 B ZN ZN . A ZN 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc4 A OE1 GLU 174 A GLU 174 1_555 C ZN ZN . A ZN 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A OE2 GLU 174 A GLU 174 1_555 C ZN ZN . A ZN 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc6 A NE2 HIS 226 A HIS 226 1_555 C ZN ZN . A ZN 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc7 A NE2 HIS 264 A HIS 264 1_555 B ZN ZN . A ZN 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc8 A ND1 HIS 264 A HIS 264 1_555 C ZN ZN . A ZN 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc9 A NZ LYS 284 A LYS 284 1_555 B ZN ZN . A ZN 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZEN _atom_sites.fract_transf_matrix[1][1] 0.012762 _atom_sites.fract_transf_matrix[1][2] 0.007368 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 359 359 ZN ZN . C 2 ZN A 1 360 360 ZN ZN . D 3 HOH A 1 361 1 HOH HOH . D 3 HOH A 2 362 2 HOH HOH . D 3 HOH A 3 363 3 HOH HOH . D 3 HOH A 4 364 4 HOH HOH . D 3 HOH A 5 365 5 HOH HOH . D 3 HOH A 6 366 6 HOH HOH . D 3 HOH A 7 367 7 HOH HOH . D 3 HOH A 8 368 8 HOH HOH . D 3 HOH A 9 369 9 HOH HOH . D 3 HOH A 10 370 10 HOH HOH . D 3 HOH A 11 371 11 HOH HOH . D 3 HOH A 12 372 12 HOH HOH . D 3 HOH A 13 373 13 HOH HOH . D 3 HOH A 14 374 14 HOH HOH . D 3 HOH A 15 375 15 HOH HOH . D 3 HOH A 16 376 16 HOH HOH . D 3 HOH A 17 377 17 HOH HOH . D 3 HOH A 18 378 18 HOH HOH . D 3 HOH A 19 379 19 HOH HOH . D 3 HOH A 20 380 20 HOH HOH . D 3 HOH A 21 381 21 HOH HOH . D 3 HOH A 22 382 22 HOH HOH . D 3 HOH A 23 383 23 HOH HOH . D 3 HOH A 24 384 24 HOH HOH . D 3 HOH A 25 385 25 HOH HOH . D 3 HOH A 26 386 26 HOH HOH . D 3 HOH A 27 387 27 HOH HOH . D 3 HOH A 28 388 28 HOH HOH . D 3 HOH A 29 389 29 HOH HOH . D 3 HOH A 30 390 30 HOH HOH . D 3 HOH A 31 391 31 HOH HOH . D 3 HOH A 32 392 32 HOH HOH . D 3 HOH A 33 393 33 HOH HOH . D 3 HOH A 34 394 34 HOH HOH . D 3 HOH A 35 395 35 HOH HOH . D 3 HOH A 36 396 36 HOH HOH . D 3 HOH A 37 397 37 HOH HOH . D 3 HOH A 38 398 38 HOH HOH . D 3 HOH A 39 399 39 HOH HOH . D 3 HOH A 40 400 40 HOH HOH . D 3 HOH A 41 401 41 HOH HOH . D 3 HOH A 42 402 42 HOH HOH . D 3 HOH A 43 403 43 HOH HOH . D 3 HOH A 44 404 44 HOH HOH . D 3 HOH A 45 405 45 HOH HOH . D 3 HOH A 46 406 46 HOH HOH . D 3 HOH A 47 407 47 HOH HOH . D 3 HOH A 48 408 48 HOH HOH . D 3 HOH A 49 409 49 HOH HOH . D 3 HOH A 50 410 50 HOH HOH . D 3 HOH A 51 411 51 HOH HOH . D 3 HOH A 52 412 52 HOH HOH . D 3 HOH A 53 413 53 HOH HOH . D 3 HOH A 54 414 54 HOH HOH . D 3 HOH A 55 415 55 HOH HOH . D 3 HOH A 56 416 56 HOH HOH . D 3 HOH A 57 417 57 HOH HOH . D 3 HOH A 58 418 58 HOH HOH . D 3 HOH A 59 419 59 HOH HOH . D 3 HOH A 60 420 60 HOH HOH . D 3 HOH A 61 421 61 HOH HOH . D 3 HOH A 62 422 62 HOH HOH . D 3 HOH A 63 423 63 HOH HOH . D 3 HOH A 64 424 64 HOH HOH . D 3 HOH A 65 425 65 HOH HOH . D 3 HOH A 66 426 66 HOH HOH . D 3 HOH A 67 427 67 HOH HOH . D 3 HOH A 68 428 68 HOH HOH . D 3 HOH A 69 429 69 HOH HOH . D 3 HOH A 70 430 70 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.154 _atom_site.Cartn_y 27.084 _atom_site.Cartn_z 12.901 _atom_site.occupancy 0.6 _atom_site.B_iso_or_equiv 34.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 359 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #