data_1ZES # _model_server_result.job_id r9YaM2nKjs2BkusMbtm-GA _model_server_result.datetime_utc '2024-12-19 06:24:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1ZES # _exptl.entry_id 1ZES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZES _cell.length_a 77.869 _cell.length_b 77.869 _cell.length_c 109.071 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZES _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1,2 B,C,F,G,H,I,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 54.5355 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 10 A ASP 10 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 A OD1 ASP 53 A ASP 53 1_555 E BE BEF . A BEF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? metalc ? metalc3 A OD2 ASP 53 A ASP 53 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc4 A O MET 55 A MET 55 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 E F1 BEF . A BEF 201 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 D MG MG . A MG 302 1_555 J O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc7 D MG MG . A MG 302 1_555 J O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc8 B OD1 ASP 10 B ASP 10 1_555 F MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc9 B OD1 ASP 53 B ASP 53 1_555 G BE BEF . B BEF 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? metalc ? metalc10 B OD2 ASP 53 B ASP 53 1_555 F MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc11 B O MET 55 B MET 55 1_555 F MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc12 G F1 BEF . B BEF 202 1_555 F MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc13 F MG MG . B MG 303 1_555 K O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc14 F MG MG . B MG 303 1_555 K O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc15 C OD1 ASP 10 C ASP 10 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 C OD1 ASP 53 C ASP 53 1_555 I BE BEF . C BEF 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc17 C OD2 ASP 53 C ASP 53 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc18 C O MET 55 C MET 55 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc19 I F1 BEF . C BEF 203 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc20 H MG MG . C MG 301 1_555 L O HOH . C HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc21 H MG MG . C MG 301 1_555 L O HOH . C HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZES _atom_sites.fract_transf_matrix[1][1] 0.012842 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 302 302 MG MG . E 3 BEF A 1 201 201 BEF BEF . F 2 MG B 1 303 303 MG MG . G 3 BEF B 1 202 202 BEF BEF . H 2 MG C 1 301 301 MG MG . I 3 BEF C 1 203 203 BEF BEF . J 4 HOH A 1 303 16 HOH HOH . J 4 HOH A 2 304 18 HOH HOH . J 4 HOH A 3 305 21 HOH HOH . J 4 HOH A 4 306 23 HOH HOH . J 4 HOH A 5 307 24 HOH HOH . J 4 HOH A 6 308 26 HOH HOH . J 4 HOH A 7 309 28 HOH HOH . J 4 HOH A 8 310 29 HOH HOH . J 4 HOH A 9 311 32 HOH HOH . J 4 HOH A 10 312 37 HOH HOH . J 4 HOH A 11 313 42 HOH HOH . J 4 HOH A 12 314 45 HOH HOH . J 4 HOH A 13 315 46 HOH HOH . J 4 HOH A 14 316 49 HOH HOH . J 4 HOH A 15 317 61 HOH HOH . J 4 HOH A 16 318 62 HOH HOH . J 4 HOH A 17 319 63 HOH HOH . J 4 HOH A 18 320 64 HOH HOH . J 4 HOH A 19 321 65 HOH HOH . J 4 HOH A 20 322 71 HOH HOH . J 4 HOH A 21 323 77 HOH HOH . J 4 HOH A 22 324 78 HOH HOH . J 4 HOH A 23 325 81 HOH HOH . J 4 HOH A 24 326 82 HOH HOH . J 4 HOH A 25 327 83 HOH HOH . J 4 HOH A 26 328 86 HOH HOH . J 4 HOH A 27 329 87 HOH HOH . J 4 HOH A 28 330 88 HOH HOH . J 4 HOH A 29 331 90 HOH HOH . J 4 HOH A 30 332 91 HOH HOH . J 4 HOH A 31 333 92 HOH HOH . J 4 HOH A 32 334 93 HOH HOH . J 4 HOH A 33 335 97 HOH HOH . J 4 HOH A 34 336 98 HOH HOH . J 4 HOH A 35 337 99 HOH HOH . J 4 HOH A 36 338 100 HOH HOH . J 4 HOH A 37 339 102 HOH HOH . J 4 HOH A 38 340 104 HOH HOH . J 4 HOH A 39 341 105 HOH HOH . J 4 HOH A 40 342 109 HOH HOH . J 4 HOH A 41 343 111 HOH HOH . J 4 HOH A 42 344 112 HOH HOH . J 4 HOH A 43 345 119 HOH HOH . J 4 HOH A 44 346 120 HOH HOH . J 4 HOH A 45 347 121 HOH HOH . J 4 HOH A 46 348 122 HOH HOH . J 4 HOH A 47 349 123 HOH HOH . J 4 HOH A 48 350 124 HOH HOH . J 4 HOH A 49 351 126 HOH HOH . J 4 HOH A 50 352 127 HOH HOH . J 4 HOH A 51 353 128 HOH HOH . J 4 HOH A 52 354 129 HOH HOH . J 4 HOH A 53 355 139 HOH HOH . J 4 HOH A 54 356 140 HOH HOH . J 4 HOH A 55 357 141 HOH HOH . J 4 HOH A 56 358 143 HOH HOH . J 4 HOH A 57 359 144 HOH HOH . J 4 HOH A 58 360 145 HOH HOH . J 4 HOH A 59 361 146 HOH HOH . J 4 HOH A 60 362 147 HOH HOH . J 4 HOH A 61 363 148 HOH HOH . J 4 HOH A 62 364 149 HOH HOH . J 4 HOH A 63 365 150 HOH HOH . J 4 HOH A 64 366 151 HOH HOH . J 4 HOH A 65 367 152 HOH HOH . J 4 HOH A 66 368 153 HOH HOH . J 4 HOH A 67 369 161 HOH HOH . J 4 HOH A 68 370 176 HOH HOH . K 4 HOH B 1 304 6 HOH HOH . K 4 HOH B 2 305 7 HOH HOH . K 4 HOH B 3 306 8 HOH HOH . K 4 HOH B 4 307 20 HOH HOH . K 4 HOH B 5 308 22 HOH HOH . K 4 HOH B 6 309 27 HOH HOH . K 4 HOH B 7 310 30 HOH HOH . K 4 HOH B 8 311 33 HOH HOH . K 4 HOH B 9 312 34 HOH HOH . K 4 HOH B 10 313 39 HOH HOH . K 4 HOH B 11 314 41 HOH HOH . K 4 HOH B 12 315 43 HOH HOH . K 4 HOH B 13 316 47 HOH HOH . K 4 HOH B 14 317 48 HOH HOH . K 4 HOH B 15 318 50 HOH HOH . K 4 HOH B 16 319 52 HOH HOH . K 4 HOH B 17 320 53 HOH HOH . K 4 HOH B 18 321 54 HOH HOH . K 4 HOH B 19 322 58 HOH HOH . K 4 HOH B 20 323 59 HOH HOH . K 4 HOH B 21 324 60 HOH HOH . K 4 HOH B 22 325 66 HOH HOH . K 4 HOH B 23 326 67 HOH HOH . K 4 HOH B 24 327 68 HOH HOH . K 4 HOH B 25 328 69 HOH HOH . K 4 HOH B 26 329 70 HOH HOH . K 4 HOH B 27 330 73 HOH HOH . K 4 HOH B 28 331 74 HOH HOH . K 4 HOH B 29 332 75 HOH HOH . K 4 HOH B 30 333 76 HOH HOH . K 4 HOH B 31 334 96 HOH HOH . K 4 HOH B 32 335 101 HOH HOH . K 4 HOH B 33 336 106 HOH HOH . K 4 HOH B 34 337 107 HOH HOH . K 4 HOH B 35 338 108 HOH HOH . K 4 HOH B 36 339 110 HOH HOH . K 4 HOH B 37 340 114 HOH HOH . K 4 HOH B 38 341 115 HOH HOH . K 4 HOH B 39 342 116 HOH HOH . K 4 HOH B 40 343 117 HOH HOH . K 4 HOH B 41 344 118 HOH HOH . K 4 HOH B 42 345 130 HOH HOH . K 4 HOH B 43 346 131 HOH HOH . K 4 HOH B 44 347 154 HOH HOH . K 4 HOH B 45 348 155 HOH HOH . K 4 HOH B 46 349 157 HOH HOH . K 4 HOH B 47 350 158 HOH HOH . K 4 HOH B 48 351 160 HOH HOH . K 4 HOH B 49 352 162 HOH HOH . K 4 HOH B 50 353 174 HOH HOH . K 4 HOH B 51 354 175 HOH HOH . K 4 HOH B 52 355 177 HOH HOH . K 4 HOH B 53 356 178 HOH HOH . K 4 HOH B 54 357 180 HOH HOH . L 4 HOH C 1 302 1 HOH HOH . L 4 HOH C 2 303 2 HOH HOH . L 4 HOH C 3 304 3 HOH HOH . L 4 HOH C 4 305 4 HOH HOH . L 4 HOH C 5 306 5 HOH HOH . L 4 HOH C 6 307 9 HOH HOH . L 4 HOH C 7 308 10 HOH HOH . L 4 HOH C 8 309 11 HOH HOH . L 4 HOH C 9 310 12 HOH HOH . L 4 HOH C 10 311 13 HOH HOH . L 4 HOH C 11 312 14 HOH HOH . L 4 HOH C 12 313 15 HOH HOH . L 4 HOH C 13 314 17 HOH HOH . L 4 HOH C 14 315 19 HOH HOH . L 4 HOH C 15 316 25 HOH HOH . L 4 HOH C 16 317 31 HOH HOH . L 4 HOH C 17 318 35 HOH HOH . L 4 HOH C 18 319 36 HOH HOH . L 4 HOH C 19 320 38 HOH HOH . L 4 HOH C 20 321 40 HOH HOH . L 4 HOH C 21 322 44 HOH HOH . L 4 HOH C 22 323 51 HOH HOH . L 4 HOH C 23 324 55 HOH HOH . L 4 HOH C 24 325 56 HOH HOH . L 4 HOH C 25 326 57 HOH HOH . L 4 HOH C 26 327 72 HOH HOH . L 4 HOH C 27 328 79 HOH HOH . L 4 HOH C 28 329 80 HOH HOH . L 4 HOH C 29 330 84 HOH HOH . L 4 HOH C 30 331 85 HOH HOH . L 4 HOH C 31 332 89 HOH HOH . L 4 HOH C 32 333 95 HOH HOH . L 4 HOH C 33 334 103 HOH HOH . L 4 HOH C 34 335 113 HOH HOH . L 4 HOH C 35 336 125 HOH HOH . L 4 HOH C 36 337 132 HOH HOH . L 4 HOH C 37 338 133 HOH HOH . L 4 HOH C 38 339 134 HOH HOH . L 4 HOH C 39 340 135 HOH HOH . L 4 HOH C 40 341 136 HOH HOH . L 4 HOH C 41 342 137 HOH HOH . L 4 HOH C 42 343 138 HOH HOH . L 4 HOH C 43 344 142 HOH HOH . L 4 HOH C 44 345 156 HOH HOH . L 4 HOH C 45 346 159 HOH HOH . L 4 HOH C 46 347 163 HOH HOH . L 4 HOH C 47 348 164 HOH HOH . L 4 HOH C 48 349 165 HOH HOH . L 4 HOH C 49 350 166 HOH HOH . L 4 HOH C 50 351 167 HOH HOH . L 4 HOH C 51 352 168 HOH HOH . L 4 HOH C 52 353 169 HOH HOH . L 4 HOH C 53 354 170 HOH HOH . L 4 HOH C 54 355 171 HOH HOH . L 4 HOH C 55 356 172 HOH HOH . L 4 HOH C 56 357 173 HOH HOH . L 4 HOH C 57 358 179 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.14 _atom_site.Cartn_y 12.006 _atom_site.Cartn_z 30.189 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #