data_1ZEZ # _model_server_result.job_id hDtmGZhwkySJYETvNS0wJw _model_server_result.datetime_utc '2025-03-06 06:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 1ZEZ # _exptl.entry_id 1ZEZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.08 _cell.angle_gamma 90 _cell.entry_id 1ZEZ _cell.length_a 66.02 _cell.length_b 24.12 _cell.length_c 36.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O HOH . A HOH 24 4_455 C CA CA . A CA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc2 C CA CA . A CA 25 1_555 D O HOH . A HOH 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 C CA CA . A CA 25 1_555 D O HOH . A HOH 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc4 C CA CA . A CA 25 1_555 D O HOH . A HOH 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc5 C CA CA . A CA 25 1_555 E O HOH . B HOH 47 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 5 A DT 5 1_555 B N1 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 5 A DT 5 1_555 B N6 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZEZ _atom_sites.fract_transf_matrix[1][1] 0.015147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005537 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.041459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 25 25 CA CA . D 3 HOH A 1 21 21 HOH WAT . D 3 HOH A 2 22 22 HOH WAT . D 3 HOH A 3 23 23 HOH WAT . D 3 HOH A 4 24 24 HOH WAT . D 3 HOH A 5 26 26 HOH WAT . D 3 HOH A 6 27 27 HOH WAT . D 3 HOH A 7 29 29 HOH WAT . D 3 HOH A 8 30 30 HOH WAT . D 3 HOH A 9 32 32 HOH WAT . D 3 HOH A 10 33 33 HOH WAT . D 3 HOH A 11 36 36 HOH WAT . D 3 HOH A 12 37 37 HOH WAT . D 3 HOH A 13 39 39 HOH WAT . D 3 HOH A 14 40 40 HOH WAT . D 3 HOH A 15 42 42 HOH WAT . D 3 HOH A 16 43 43 HOH WAT . D 3 HOH A 17 48 48 HOH WAT . D 3 HOH A 18 50 50 HOH WAT . D 3 HOH A 19 51 51 HOH WAT . D 3 HOH A 20 53 53 HOH WAT . D 3 HOH A 21 54 54 HOH WAT . D 3 HOH A 22 55 55 HOH WAT . D 3 HOH A 23 57 57 HOH WAT . D 3 HOH A 24 58 58 HOH WAT . D 3 HOH A 25 59 59 HOH WAT . D 3 HOH A 26 61 61 HOH WAT . D 3 HOH A 27 64 64 HOH WAT . D 3 HOH A 28 66 66 HOH WAT . D 3 HOH A 29 67 67 HOH WAT . D 3 HOH A 30 68 68 HOH WAT . D 3 HOH A 31 69 69 HOH WAT . D 3 HOH A 32 70 70 HOH WAT . D 3 HOH A 33 72 72 HOH WAT . D 3 HOH A 34 73 73 HOH WAT . D 3 HOH A 35 74 74 HOH WAT . D 3 HOH A 36 75 75 HOH WAT . D 3 HOH A 37 77 77 HOH WAT . D 3 HOH A 38 78 78 HOH WAT . D 3 HOH A 39 79 79 HOH WAT . D 3 HOH A 40 81 81 HOH WAT . D 3 HOH A 41 84 84 HOH WAT . D 3 HOH A 42 85 85 HOH WAT . D 3 HOH A 43 87 87 HOH WAT . D 3 HOH A 44 88 88 HOH WAT . D 3 HOH A 45 91 91 HOH WAT . D 3 HOH A 46 94 94 HOH WAT . D 3 HOH A 47 95 95 HOH WAT . E 3 HOH B 1 31 31 HOH WAT . E 3 HOH B 2 34 34 HOH WAT . E 3 HOH B 3 35 35 HOH WAT . E 3 HOH B 4 38 38 HOH WAT . E 3 HOH B 5 41 41 HOH WAT . E 3 HOH B 6 44 44 HOH WAT . E 3 HOH B 7 46 46 HOH WAT . E 3 HOH B 8 47 47 HOH WAT . E 3 HOH B 9 49 49 HOH WAT . E 3 HOH B 10 52 52 HOH WAT . E 3 HOH B 11 56 56 HOH WAT . E 3 HOH B 12 62 62 HOH WAT . E 3 HOH B 13 63 63 HOH WAT . E 3 HOH B 14 65 65 HOH WAT . E 3 HOH B 15 71 71 HOH WAT . E 3 HOH B 16 76 76 HOH WAT . E 3 HOH B 17 80 80 HOH WAT . E 3 HOH B 18 82 82 HOH WAT . E 3 HOH B 19 83 83 HOH WAT . E 3 HOH B 20 89 89 HOH WAT . E 3 HOH B 21 93 93 HOH WAT . E 3 HOH B 22 96 96 HOH WAT . E 3 HOH B 23 97 97 HOH WAT . E 3 HOH B 24 98 98 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.51 _atom_site.Cartn_y -1.33 _atom_site.Cartn_z -12.234 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 25 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #