data_1ZF4 # _model_server_result.job_id CnJ_vz5D3PHWCNYVzecDHA _model_server_result.datetime_utc '2024-10-20 00:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":68}' # _entry.id 1ZF4 # _exptl.entry_id 1ZF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.69 _cell.angle_gamma 90 _cell.entry_id 1ZF4 _cell.length_a 64.936 _cell.length_b 24.034 _cell.length_c 40.286 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 129.872 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OP2 DA 6 A DA 6 1_555 C NA NA . A NA 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 4 A DA 4 1_555 B N3 DT 7 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 4 A DA 4 1_555 B O4 DT 7 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 5 A DT 5 1_555 B N1 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 5 A DT 5 1_555 B N6 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 6 1_555 B N3 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 6 1_555 B O4 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZF4 _atom_sites.fract_transf_matrix[1][1] 0.0154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00843 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.04161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 68 68 NA NA . D 3 HOH A 1 21 21 HOH HOH . D 3 HOH A 2 22 22 HOH HOH . D 3 HOH A 3 24 24 HOH HOH . D 3 HOH A 4 25 25 HOH HOH . D 3 HOH A 5 30 30 HOH HOH . D 3 HOH A 6 33 33 HOH HOH . D 3 HOH A 7 41 41 HOH HOH . D 3 HOH A 8 42 42 HOH HOH . D 3 HOH A 9 43 43 HOH HOH . D 3 HOH A 10 45 45 HOH HOH . D 3 HOH A 11 47 47 HOH HOH . D 3 HOH A 12 48 48 HOH HOH . D 3 HOH A 13 49 49 HOH HOH . D 3 HOH A 14 50 50 HOH HOH . D 3 HOH A 15 54 54 HOH HOH . D 3 HOH A 16 56 56 HOH HOH . D 3 HOH A 17 57 57 HOH HOH . D 3 HOH A 18 58 58 HOH HOH . D 3 HOH A 19 59 59 HOH HOH . D 3 HOH A 20 60 60 HOH HOH . D 3 HOH A 21 61 61 HOH HOH . D 3 HOH A 22 62 62 HOH HOH . D 3 HOH A 23 63 63 HOH HOH . D 3 HOH A 24 64 64 HOH HOH . D 3 HOH A 25 69 69 HOH HOH . D 3 HOH A 26 70 70 HOH HOH . D 3 HOH A 27 71 71 HOH HOH . D 3 HOH A 28 73 73 HOH HOH . D 3 HOH A 29 74 74 HOH HOH . D 3 HOH A 30 76 76 HOH HOH . D 3 HOH A 31 77 77 HOH HOH . D 3 HOH A 32 78 78 HOH HOH . D 3 HOH A 33 81 81 HOH HOH . D 3 HOH A 34 84 84 HOH HOH . D 3 HOH A 35 86 86 HOH HOH . D 3 HOH A 36 89 89 HOH HOH . D 3 HOH A 37 94 94 HOH HOH . D 3 HOH A 38 98 98 HOH HOH . D 3 HOH A 39 99 99 HOH HOH . D 3 HOH A 40 100 100 HOH HOH . D 3 HOH A 41 102 102 HOH HOH . D 3 HOH A 42 103 103 HOH HOH . D 3 HOH A 43 105 105 HOH HOH . D 3 HOH A 44 106 106 HOH HOH . D 3 HOH A 45 107 107 HOH HOH . D 3 HOH A 46 108 108 HOH HOH . D 3 HOH A 47 109 109 HOH HOH . D 3 HOH A 48 110 110 HOH HOH . D 3 HOH A 49 114 114 HOH HOH . D 3 HOH A 50 115 115 HOH HOH . D 3 HOH A 51 118 118 HOH HOH . D 3 HOH A 52 119 119 HOH HOH . D 3 HOH A 53 120 120 HOH HOH . D 3 HOH A 54 121 121 HOH HOH . D 3 HOH A 55 122 122 HOH HOH . D 3 HOH A 56 123 123 HOH HOH . D 3 HOH A 57 125 125 HOH HOH . D 3 HOH A 58 127 127 HOH HOH . D 3 HOH A 59 128 128 HOH HOH . D 3 HOH A 60 132 132 HOH HOH . D 3 HOH A 61 134 134 HOH HOH . D 3 HOH A 62 139 139 HOH HOH . E 3 HOH B 1 23 23 HOH HOH . E 3 HOH B 2 26 26 HOH HOH . E 3 HOH B 3 27 27 HOH HOH . E 3 HOH B 4 28 28 HOH HOH . E 3 HOH B 5 29 29 HOH HOH . E 3 HOH B 6 31 31 HOH HOH . E 3 HOH B 7 32 32 HOH HOH . E 3 HOH B 8 34 34 HOH HOH . E 3 HOH B 9 35 35 HOH HOH . E 3 HOH B 10 36 36 HOH HOH . E 3 HOH B 11 37 37 HOH HOH . E 3 HOH B 12 38 38 HOH HOH . E 3 HOH B 13 39 39 HOH HOH . E 3 HOH B 14 40 40 HOH HOH . E 3 HOH B 15 44 44 HOH HOH . E 3 HOH B 16 46 46 HOH HOH . E 3 HOH B 17 51 51 HOH HOH . E 3 HOH B 18 52 52 HOH HOH . E 3 HOH B 19 53 53 HOH HOH . E 3 HOH B 20 55 55 HOH HOH . E 3 HOH B 21 65 65 HOH HOH . E 3 HOH B 22 66 66 HOH HOH . E 3 HOH B 23 67 67 HOH HOH . E 3 HOH B 24 72 72 HOH HOH . E 3 HOH B 25 75 75 HOH HOH . E 3 HOH B 26 79 79 HOH HOH . E 3 HOH B 27 80 80 HOH HOH . E 3 HOH B 28 82 82 HOH HOH . E 3 HOH B 29 83 83 HOH HOH . E 3 HOH B 30 85 85 HOH HOH . E 3 HOH B 31 87 87 HOH HOH . E 3 HOH B 32 88 88 HOH HOH . E 3 HOH B 33 90 90 HOH HOH . E 3 HOH B 34 91 91 HOH HOH . E 3 HOH B 35 92 92 HOH HOH . E 3 HOH B 36 93 93 HOH HOH . E 3 HOH B 37 95 95 HOH HOH . E 3 HOH B 38 96 96 HOH HOH . E 3 HOH B 39 97 97 HOH HOH . E 3 HOH B 40 101 101 HOH HOH . E 3 HOH B 41 104 104 HOH HOH . E 3 HOH B 42 111 111 HOH HOH . E 3 HOH B 43 112 112 HOH HOH . E 3 HOH B 44 113 113 HOH HOH . E 3 HOH B 45 116 116 HOH HOH . E 3 HOH B 46 117 117 HOH HOH . E 3 HOH B 47 124 124 HOH HOH . E 3 HOH B 48 126 126 HOH HOH . E 3 HOH B 49 129 129 HOH HOH . E 3 HOH B 50 130 130 HOH HOH . E 3 HOH B 51 131 131 HOH HOH . E 3 HOH B 52 133 133 HOH HOH . E 3 HOH B 53 135 135 HOH HOH . E 3 HOH B 54 136 136 HOH HOH . E 3 HOH B 55 137 137 HOH HOH . E 3 HOH B 56 138 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 64.938 _atom_site.Cartn_y -2.259 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 8.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 68 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #