data_1ZF8 # _model_server_result.job_id ADgRrRY8uF4Z-NXd8tUsRw _model_server_result.datetime_utc '2025-03-06 06:15:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":21}' # _entry.id 1ZF8 # _exptl.entry_id 1ZF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZF8 _cell.length_a 23.77 _cell.length_b 44.85 _cell.length_c 49.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C CA CA . B CA 21 1_555 E O HOH . B HOH 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc2 C CA CA . B CA 21 1_555 E O HOH . B HOH 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc3 C CA CA . B CA 21 1_555 E O HOH . B HOH 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc4 C CA CA . B CA 21 1_555 E O HOH . B HOH 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 C CA CA . B CA 21 1_555 E O HOH . B HOH 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc6 C CA CA . B CA 21 1_555 E O HOH . B HOH 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc7 C CA CA . B CA 21 1_555 E O HOH . B HOH 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 3 A DA 3 1_555 B N3 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 3 A DA 3 1_555 B O4 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 4 A DC 4 1_555 B N1 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 4 A DC 4 1_555 B O6 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 4 A DC 4 1_555 B N2 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 5 A DC 5 1_555 B N1 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 5 A DC 5 1_555 B O6 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 5 A DC 5 1_555 B N2 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 6 A DG 6 1_555 B N3 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 6 A DG 6 1_555 B O2 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 6 A DG 6 1_555 B N4 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 7 A DG 7 1_555 B N3 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 7 A DG 7 1_555 B O2 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 7 A DG 7 1_555 B N4 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DT 8 A DT 8 1_555 B N1 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O4 DT 8 A DT 8 1_555 B N6 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog26 A N1 DG 10 A DG 10 1_555 B O2 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZF8 _atom_sites.fract_transf_matrix[1][1] 0.04207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA B 1 21 21 CA CA . D 3 HOH A 1 22 22 HOH HOH . D 3 HOH A 2 23 23 HOH HOH . D 3 HOH A 3 25 25 HOH HOH . D 3 HOH A 4 26 26 HOH HOH . D 3 HOH A 5 31 31 HOH HOH . D 3 HOH A 6 32 32 HOH HOH . D 3 HOH A 7 35 35 HOH HOH . D 3 HOH A 8 39 39 HOH HOH . D 3 HOH A 9 40 40 HOH HOH . D 3 HOH A 10 41 41 HOH HOH . D 3 HOH A 11 43 43 HOH HOH . D 3 HOH A 12 45 45 HOH HOH . D 3 HOH A 13 53 53 HOH HOH . D 3 HOH A 14 57 57 HOH HOH . D 3 HOH A 15 58 58 HOH HOH . D 3 HOH A 16 59 59 HOH HOH . D 3 HOH A 17 60 60 HOH HOH . D 3 HOH A 18 62 62 HOH HOH . D 3 HOH A 19 63 63 HOH HOH . D 3 HOH A 20 65 65 HOH HOH . D 3 HOH A 21 67 67 HOH HOH . D 3 HOH A 22 68 68 HOH HOH . D 3 HOH A 23 70 70 HOH HOH . D 3 HOH A 24 71 71 HOH HOH . D 3 HOH A 25 72 72 HOH HOH . D 3 HOH A 26 73 73 HOH HOH . D 3 HOH A 27 76 76 HOH HOH . D 3 HOH A 28 77 77 HOH HOH . D 3 HOH A 29 78 78 HOH HOH . D 3 HOH A 30 79 79 HOH HOH . D 3 HOH A 31 81 81 HOH HOH . D 3 HOH A 32 82 82 HOH HOH . D 3 HOH A 33 85 85 HOH HOH . D 3 HOH A 34 86 86 HOH HOH . D 3 HOH A 35 87 87 HOH HOH . D 3 HOH A 36 88 88 HOH HOH . D 3 HOH A 37 91 91 HOH HOH . D 3 HOH A 38 92 92 HOH HOH . D 3 HOH A 39 96 96 HOH HOH . D 3 HOH A 40 97 97 HOH HOH . D 3 HOH A 41 98 98 HOH HOH . D 3 HOH A 42 99 99 HOH HOH . D 3 HOH A 43 103 103 HOH HOH . D 3 HOH A 44 104 104 HOH HOH . D 3 HOH A 45 105 105 HOH HOH . D 3 HOH A 46 107 107 HOH HOH . D 3 HOH A 47 109 109 HOH HOH . D 3 HOH A 48 111 111 HOH HOH . D 3 HOH A 49 113 113 HOH HOH . D 3 HOH A 50 115 115 HOH HOH . D 3 HOH A 51 116 116 HOH HOH . D 3 HOH A 52 118 118 HOH HOH . D 3 HOH A 53 119 119 HOH HOH . D 3 HOH A 54 120 120 HOH HOH . D 3 HOH A 55 121 121 HOH HOH . D 3 HOH A 56 122 122 HOH HOH . D 3 HOH A 57 123 123 HOH HOH . D 3 HOH A 58 124 124 HOH HOH . D 3 HOH A 59 125 125 HOH HOH . D 3 HOH A 60 126 126 HOH HOH . D 3 HOH A 61 127 127 HOH HOH . D 3 HOH A 62 129 129 HOH HOH . D 3 HOH A 63 131 131 HOH HOH . D 3 HOH A 64 132 132 HOH HOH . D 3 HOH A 65 135 135 HOH HOH . D 3 HOH A 66 137 137 HOH HOH . D 3 HOH A 67 138 138 HOH HOH . D 3 HOH A 68 139 139 HOH HOH . D 3 HOH A 69 141 141 HOH HOH . D 3 HOH A 70 144 144 HOH HOH . D 3 HOH A 71 145 145 HOH HOH . D 3 HOH A 72 146 146 HOH HOH . D 3 HOH A 73 148 148 HOH HOH . D 3 HOH A 74 149 149 HOH HOH . D 3 HOH A 75 150 150 HOH HOH . D 3 HOH A 76 152 152 HOH HOH . D 3 HOH A 77 154 154 HOH HOH . D 3 HOH A 78 155 155 HOH HOH . D 3 HOH A 79 159 159 HOH HOH . D 3 HOH A 80 160 160 HOH HOH . D 3 HOH A 81 161 161 HOH HOH . D 3 HOH A 82 162 162 HOH HOH . E 3 HOH B 1 24 24 HOH HOH . E 3 HOH B 2 27 27 HOH HOH . E 3 HOH B 3 28 28 HOH HOH . E 3 HOH B 4 29 29 HOH HOH . E 3 HOH B 5 30 30 HOH HOH . E 3 HOH B 6 33 33 HOH HOH . E 3 HOH B 7 34 34 HOH HOH . E 3 HOH B 8 36 36 HOH HOH . E 3 HOH B 9 37 37 HOH HOH . E 3 HOH B 10 38 38 HOH HOH . E 3 HOH B 11 42 42 HOH HOH . E 3 HOH B 12 44 44 HOH HOH . E 3 HOH B 13 46 46 HOH HOH . E 3 HOH B 14 47 47 HOH HOH . E 3 HOH B 15 48 48 HOH HOH . E 3 HOH B 16 49 49 HOH HOH . E 3 HOH B 17 50 50 HOH HOH . E 3 HOH B 18 52 52 HOH HOH . E 3 HOH B 19 54 54 HOH HOH . E 3 HOH B 20 55 55 HOH HOH . E 3 HOH B 21 56 56 HOH HOH . E 3 HOH B 22 61 61 HOH HOH . E 3 HOH B 23 64 64 HOH HOH . E 3 HOH B 24 66 66 HOH HOH . E 3 HOH B 25 69 69 HOH HOH . E 3 HOH B 26 74 74 HOH HOH . E 3 HOH B 27 75 75 HOH HOH . E 3 HOH B 28 80 80 HOH HOH . E 3 HOH B 29 83 83 HOH HOH . E 3 HOH B 30 84 84 HOH HOH . E 3 HOH B 31 89 89 HOH HOH . E 3 HOH B 32 90 90 HOH HOH . E 3 HOH B 33 93 93 HOH HOH . E 3 HOH B 34 94 94 HOH HOH . E 3 HOH B 35 95 95 HOH HOH . E 3 HOH B 36 100 100 HOH HOH . E 3 HOH B 37 101 101 HOH HOH . E 3 HOH B 38 102 102 HOH HOH . E 3 HOH B 39 106 106 HOH HOH . E 3 HOH B 40 108 108 HOH HOH . E 3 HOH B 41 110 110 HOH HOH . E 3 HOH B 42 112 112 HOH HOH . E 3 HOH B 43 114 114 HOH HOH . E 3 HOH B 44 117 117 HOH HOH . E 3 HOH B 45 128 128 HOH HOH . E 3 HOH B 46 130 130 HOH HOH . E 3 HOH B 47 133 133 HOH HOH . E 3 HOH B 48 134 134 HOH HOH . E 3 HOH B 49 136 136 HOH HOH . E 3 HOH B 50 140 140 HOH HOH . E 3 HOH B 51 142 142 HOH HOH . E 3 HOH B 52 143 143 HOH HOH . E 3 HOH B 53 147 147 HOH HOH . E 3 HOH B 54 151 151 HOH HOH . E 3 HOH B 55 153 153 HOH HOH . E 3 HOH B 56 156 156 HOH HOH . E 3 HOH B 57 157 157 HOH HOH . E 3 HOH B 58 158 158 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.219 _atom_site.Cartn_y 5.357 _atom_site.Cartn_z 18.686 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 21 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #