data_1ZF9 # _model_server_result.job_id eDRLYWYHAfsmnN1znmgVYw _model_server_result.datetime_utc '2024-10-20 00:41:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":64}' # _entry.id 1ZF9 # _exptl.entry_id 1ZF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZF9 _cell.length_a 23.28 _cell.length_b 45.31 _cell.length_c 47.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NA NA . A NA 64 1_555 E O HOH . A HOH 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc2 C NA NA . A NA 64 1_555 E O HOH . A HOH 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc3 B O6 DG 7 B DG 17 1_555 D NA NA . B NA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc4 D NA NA . B NA 35 1_555 F O HOH . B HOH 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc5 D NA NA . B NA 35 1_555 F O HOH . B HOH 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc6 D NA NA . B NA 35 1_555 F O HOH . B HOH 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc7 D NA NA . B NA 35 1_555 F O HOH . B HOH 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? hydrog 'DC-DG PAIR' hydrog1 A O2 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DC 3 A DC 3 1_555 B N1 DG 8 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N4 DC 3 A DC 3 1_555 B O6 DG 8 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O2 DC 3 A DC 3 1_555 B N2 DG 8 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 4 A DC 4 1_555 B N1 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 4 A DC 4 1_555 B O6 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 4 A DC 4 1_555 B N2 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 7 A DG 7 1_555 B N3 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 7 A DG 7 1_555 B O2 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 7 A DG 7 1_555 B N4 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 8 A DG 8 1_555 B N3 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 8 A DG 8 1_555 B O2 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 8 A DG 8 1_555 B N4 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DG 10 A DG 10 1_555 B N3 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N2 DG 10 A DG 10 1_555 B O2 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O6 DG 10 A DG 10 1_555 B N4 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZF9 _atom_sites.fract_transf_matrix[1][1] 0.042955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 64 64 NA NA . D 2 NA B 1 35 35 NA NA . E 3 HOH A 1 21 21 HOH HOH . E 3 HOH A 2 22 22 HOH HOH . E 3 HOH A 3 23 23 HOH HOH . E 3 HOH A 4 25 25 HOH HOH . E 3 HOH A 5 26 26 HOH HOH . E 3 HOH A 6 30 30 HOH HOH . E 3 HOH A 7 31 31 HOH HOH . E 3 HOH A 8 32 32 HOH HOH . E 3 HOH A 9 34 34 HOH HOH . E 3 HOH A 10 36 36 HOH HOH . E 3 HOH A 11 39 39 HOH HOH . E 3 HOH A 12 40 40 HOH HOH . E 3 HOH A 13 41 41 HOH HOH . E 3 HOH A 14 42 42 HOH HOH . E 3 HOH A 15 43 43 HOH HOH . E 3 HOH A 16 44 44 HOH HOH . E 3 HOH A 17 48 48 HOH HOH . E 3 HOH A 18 50 50 HOH HOH . E 3 HOH A 19 51 51 HOH HOH . E 3 HOH A 20 54 54 HOH HOH . E 3 HOH A 21 55 55 HOH HOH . E 3 HOH A 22 58 58 HOH HOH . E 3 HOH A 23 59 59 HOH HOH . E 3 HOH A 24 60 60 HOH HOH . E 3 HOH A 25 63 63 HOH HOH . E 3 HOH A 26 65 65 HOH HOH . E 3 HOH A 27 68 68 HOH HOH . E 3 HOH A 28 71 71 HOH HOH . E 3 HOH A 29 72 72 HOH HOH . E 3 HOH A 30 79 79 HOH HOH . E 3 HOH A 31 83 83 HOH HOH . E 3 HOH A 32 84 84 HOH HOH . E 3 HOH A 33 87 87 HOH HOH . E 3 HOH A 34 88 88 HOH HOH . E 3 HOH A 35 89 89 HOH HOH . E 3 HOH A 36 91 91 HOH HOH . E 3 HOH A 37 97 97 HOH HOH . E 3 HOH A 38 100 100 HOH HOH . E 3 HOH A 39 103 103 HOH HOH . E 3 HOH A 40 105 105 HOH HOH . E 3 HOH A 41 107 107 HOH HOH . E 3 HOH A 42 108 108 HOH HOH . E 3 HOH A 43 109 109 HOH HOH . E 3 HOH A 44 110 110 HOH HOH . E 3 HOH A 45 111 111 HOH HOH . E 3 HOH A 46 112 112 HOH HOH . E 3 HOH A 47 114 114 HOH HOH . E 3 HOH A 48 115 115 HOH HOH . E 3 HOH A 49 116 116 HOH HOH . E 3 HOH A 50 117 117 HOH HOH . E 3 HOH A 51 118 118 HOH HOH . F 3 HOH B 1 24 24 HOH HOH . F 3 HOH B 2 27 27 HOH HOH . F 3 HOH B 3 28 28 HOH HOH . F 3 HOH B 4 29 29 HOH HOH . F 3 HOH B 5 33 33 HOH HOH . F 3 HOH B 6 37 37 HOH HOH . F 3 HOH B 7 38 38 HOH HOH . F 3 HOH B 8 45 45 HOH HOH . F 3 HOH B 9 46 46 HOH HOH . F 3 HOH B 10 47 47 HOH HOH . F 3 HOH B 11 49 49 HOH HOH . F 3 HOH B 12 52 52 HOH HOH . F 3 HOH B 13 53 53 HOH HOH . F 3 HOH B 14 56 56 HOH HOH . F 3 HOH B 15 57 57 HOH HOH . F 3 HOH B 16 61 61 HOH HOH . F 3 HOH B 17 62 62 HOH HOH . F 3 HOH B 18 66 66 HOH HOH . F 3 HOH B 19 67 67 HOH HOH . F 3 HOH B 20 69 69 HOH HOH . F 3 HOH B 21 70 70 HOH HOH . F 3 HOH B 22 73 73 HOH HOH . F 3 HOH B 23 74 74 HOH HOH . F 3 HOH B 24 75 75 HOH HOH . F 3 HOH B 25 76 76 HOH HOH . F 3 HOH B 26 77 77 HOH HOH . F 3 HOH B 27 78 78 HOH HOH . F 3 HOH B 28 80 80 HOH HOH . F 3 HOH B 29 81 81 HOH HOH . F 3 HOH B 30 82 82 HOH HOH . F 3 HOH B 31 85 85 HOH HOH . F 3 HOH B 32 86 86 HOH HOH . F 3 HOH B 33 90 90 HOH HOH . F 3 HOH B 34 92 92 HOH HOH . F 3 HOH B 35 93 93 HOH HOH . F 3 HOH B 36 96 96 HOH HOH . F 3 HOH B 37 98 98 HOH HOH . F 3 HOH B 38 99 99 HOH HOH . F 3 HOH B 39 104 104 HOH HOH . F 3 HOH B 40 106 106 HOH HOH . F 3 HOH B 41 113 113 HOH HOH . F 3 HOH B 42 119 119 HOH HOH . F 3 HOH B 43 121 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.93 _atom_site.Cartn_y -4.615 _atom_site.Cartn_z 51.421 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 64 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #