data_1ZFA # _model_server_result.job_id Jbvgeg1BLQTSpLCx2tEltg _model_server_result.datetime_utc '2025-03-06 06:21:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":24}' # _entry.id 1ZFA # _exptl.entry_id 1ZFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZFA _cell.length_a 23.93 _cell.length_b 44.62 _cell.length_c 46.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NA NA . A NA 21 1_555 G O HOH . A HOH 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 C NA NA . A NA 21 1_555 G O HOH . A HOH 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc3 F CA CA . B CA 22 1_555 H O HOH . B HOH 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc4 F CA CA . B CA 22 1_555 H O HOH . B HOH 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 F CA CA . B CA 22 1_555 H O HOH . B HOH 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc6 F CA CA . B CA 22 1_555 H O HOH . B HOH 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc7 F CA CA . B CA 22 1_555 H O HOH . B HOH 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc8 F CA CA . B CA 22 1_555 H O HOH . B HOH 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc9 D NA NA . B NA 23 1_555 H O HOH . B HOH 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc10 D NA NA . B NA 23 1_555 H O HOH . B HOH 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc11 D NA NA . B NA 23 1_555 H O HOH . B HOH 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc12 E NA NA . B NA 24 1_555 H O HOH . B HOH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc13 E NA NA . B NA 24 1_555 H O HOH . B HOH 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc14 E NA NA . B NA 24 1_555 H O HOH . B HOH 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 B N1 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 B N6 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 4 A DC 4 1_555 B N1 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 4 A DC 4 1_555 B O6 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 4 A DC 4 1_555 B N2 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 5 A DC 5 1_555 B N1 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 5 A DC 5 1_555 B O6 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 5 A DC 5 1_555 B N2 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 6 A DG 6 1_555 B N3 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 6 A DG 6 1_555 B O2 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 6 A DG 6 1_555 B N4 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 7 A DG 7 1_555 B N3 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 7 A DG 7 1_555 B O2 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 7 A DG 7 1_555 B N4 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DA 8 A DA 8 1_555 B N3 DT 3 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N6 DA 8 A DA 8 1_555 B O4 DT 3 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog26 A N2 DG 10 A DG 10 1_555 B N3 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZFA _atom_sites.fract_transf_matrix[1][1] 0.041789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 21 21 NA NA . D 2 NA B 1 23 23 NA NA . E 2 NA B 1 24 24 NA NA . F 3 CA B 1 22 22 CA CA . G 4 HOH A 1 25 25 HOH HOH . G 4 HOH A 2 28 28 HOH HOH . G 4 HOH A 3 34 34 HOH HOH . G 4 HOH A 4 37 37 HOH HOH . G 4 HOH A 5 42 42 HOH HOH . G 4 HOH A 6 44 44 HOH HOH . G 4 HOH A 7 45 45 HOH HOH . G 4 HOH A 8 48 48 HOH HOH . G 4 HOH A 9 49 49 HOH HOH . G 4 HOH A 10 50 50 HOH HOH . G 4 HOH A 11 51 51 HOH HOH . G 4 HOH A 12 52 52 HOH HOH . G 4 HOH A 13 57 57 HOH HOH . G 4 HOH A 14 58 58 HOH HOH . G 4 HOH A 15 59 59 HOH HOH . G 4 HOH A 16 60 60 HOH HOH . G 4 HOH A 17 67 67 HOH HOH . G 4 HOH A 18 69 69 HOH HOH . G 4 HOH A 19 70 70 HOH HOH . G 4 HOH A 20 75 75 HOH HOH . G 4 HOH A 21 79 79 HOH HOH . G 4 HOH A 22 80 80 HOH HOH . G 4 HOH A 23 83 83 HOH HOH . G 4 HOH A 24 84 84 HOH HOH . G 4 HOH A 25 85 85 HOH HOH . G 4 HOH A 26 87 87 HOH HOH . G 4 HOH A 27 90 90 HOH HOH . G 4 HOH A 28 111 111 HOH HOH . G 4 HOH A 29 113 113 HOH HOH . G 4 HOH A 30 114 114 HOH HOH . G 4 HOH A 31 115 115 HOH HOH . G 4 HOH A 32 116 116 HOH HOH . G 4 HOH A 33 120 120 HOH HOH . G 4 HOH A 34 121 121 HOH HOH . G 4 HOH A 35 124 124 HOH HOH . G 4 HOH A 36 125 125 HOH HOH . G 4 HOH A 37 126 126 HOH HOH . G 4 HOH A 38 128 128 HOH HOH . G 4 HOH A 39 132 132 HOH HOH . G 4 HOH A 40 133 133 HOH HOH . G 4 HOH A 41 134 134 HOH HOH . G 4 HOH A 42 137 137 HOH HOH . G 4 HOH A 43 139 139 HOH HOH . G 4 HOH A 44 143 143 HOH HOH . G 4 HOH A 45 145 145 HOH HOH . G 4 HOH A 46 146 146 HOH HOH . G 4 HOH A 47 147 147 HOH HOH . G 4 HOH A 48 148 148 HOH HOH . G 4 HOH A 49 149 149 HOH HOH . G 4 HOH A 50 151 151 HOH HOH . G 4 HOH A 51 152 152 HOH HOH . G 4 HOH A 52 153 153 HOH HOH . G 4 HOH A 53 161 161 HOH HOH . G 4 HOH A 54 163 163 HOH HOH . G 4 HOH A 55 164 164 HOH HOH . G 4 HOH A 56 165 165 HOH HOH . H 4 HOH B 1 26 26 HOH HOH . H 4 HOH B 2 27 27 HOH HOH . H 4 HOH B 3 29 29 HOH HOH . H 4 HOH B 4 30 30 HOH HOH . H 4 HOH B 5 31 31 HOH HOH . H 4 HOH B 6 32 32 HOH HOH . H 4 HOH B 7 35 35 HOH HOH . H 4 HOH B 8 36 36 HOH HOH . H 4 HOH B 9 38 38 HOH HOH . H 4 HOH B 10 39 39 HOH HOH . H 4 HOH B 11 40 40 HOH HOH . H 4 HOH B 12 41 41 HOH HOH . H 4 HOH B 13 43 43 HOH HOH . H 4 HOH B 14 46 46 HOH HOH . H 4 HOH B 15 47 47 HOH HOH . H 4 HOH B 16 53 53 HOH HOH . H 4 HOH B 17 54 54 HOH HOH . H 4 HOH B 18 55 55 HOH HOH . H 4 HOH B 19 56 56 HOH HOH . H 4 HOH B 20 61 61 HOH HOH . H 4 HOH B 21 62 62 HOH HOH . H 4 HOH B 22 63 63 HOH HOH . H 4 HOH B 23 64 64 HOH HOH . H 4 HOH B 24 65 65 HOH HOH . H 4 HOH B 25 66 66 HOH HOH . H 4 HOH B 26 68 68 HOH HOH . H 4 HOH B 27 71 71 HOH HOH . H 4 HOH B 28 72 72 HOH HOH . H 4 HOH B 29 73 73 HOH HOH . H 4 HOH B 30 74 74 HOH HOH . H 4 HOH B 31 76 76 HOH HOH . H 4 HOH B 32 77 77 HOH HOH . H 4 HOH B 33 78 78 HOH HOH . H 4 HOH B 34 81 81 HOH HOH . H 4 HOH B 35 82 82 HOH HOH . H 4 HOH B 36 86 86 HOH HOH . H 4 HOH B 37 88 88 HOH HOH . H 4 HOH B 38 89 89 HOH HOH . H 4 HOH B 39 91 91 HOH HOH . H 4 HOH B 40 92 92 HOH HOH . H 4 HOH B 41 93 93 HOH HOH . H 4 HOH B 42 94 94 HOH HOH . H 4 HOH B 43 95 95 HOH HOH . H 4 HOH B 44 96 96 HOH HOH . H 4 HOH B 45 97 97 HOH HOH . H 4 HOH B 46 98 98 HOH HOH . H 4 HOH B 47 99 99 HOH HOH . H 4 HOH B 48 100 100 HOH HOH . H 4 HOH B 49 112 112 HOH HOH . H 4 HOH B 50 117 117 HOH HOH . H 4 HOH B 51 118 118 HOH HOH . H 4 HOH B 52 119 119 HOH HOH . H 4 HOH B 53 122 122 HOH HOH . H 4 HOH B 54 123 123 HOH HOH . H 4 HOH B 55 127 127 HOH HOH . H 4 HOH B 56 129 129 HOH HOH . H 4 HOH B 57 130 130 HOH HOH . H 4 HOH B 58 131 131 HOH HOH . H 4 HOH B 59 135 135 HOH HOH . H 4 HOH B 60 136 136 HOH HOH . H 4 HOH B 61 138 138 HOH HOH . H 4 HOH B 62 140 140 HOH HOH . H 4 HOH B 63 141 141 HOH HOH . H 4 HOH B 64 142 142 HOH HOH . H 4 HOH B 65 144 144 HOH HOH . H 4 HOH B 66 150 150 HOH HOH . H 4 HOH B 67 154 154 HOH HOH . H 4 HOH B 68 155 155 HOH HOH . H 4 HOH B 69 156 156 HOH HOH . H 4 HOH B 70 157 157 HOH HOH . H 4 HOH B 71 158 158 HOH HOH . H 4 HOH B 72 159 159 HOH HOH . H 4 HOH B 73 160 160 HOH HOH . H 4 HOH B 74 162 162 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.251 _atom_site.Cartn_y 26.619 _atom_site.Cartn_z 39.812 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 4.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 24 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #