data_1ZFN
#
_model_server_result.job_id            kQLDmbXWaq3S43hfyFt3kA 
_model_server_result.datetime_utc      '2025-01-03 00:49:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zfn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":253}' 
#
_entry.id    1ZFN 
#
_exptl.entry_id    1ZFN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZFN 
_cell.length_a            360.3 
_cell.length_b            360.3 
_cell.length_c            360.3 
_cell.Z_PDB               384 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZFN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        210 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 41 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dodecameric 12 software_defined_assembly 3 
PISA octameric 8 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1,2,3 
A,B,C,D,E,F,G,H,I,J,K,L 4 1,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_554 -z,-x+1/2,y-1/2 0 0 -1 -1 0 0 0 1 0 0 180.15 -180.15 
3 'crystal symmetry operation' 10_555 -y+1/2,z+1/2,-x 0 -1 0 0 0 1 -1 0 0 180.15 180.15 0 
4 'crystal symmetry operation' 14_555 -y+1/4,-x+1/4,-z+1/4 0 -1 0 -1 0 0 0 0 -1 90.075 90.075 90.075 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 171 A CYS 169 1_555 E ZN ZN . A ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc2 A SG CYS 174 A CYS 172 1_555 E ZN ZN . A ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc3 A SG CYS 242 A CYS 240 1_555 E ZN ZN . A ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc4 B SG CYS 171 B CYS 169 1_555 G ZN ZN . B ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc5 B SG CYS 174 B CYS 172 1_555 G ZN ZN . B ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc6 B SG CYS 242 B CYS 240 1_555 G ZN ZN . B ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc7 B SG CYS 245 B CYS 243 1_555 G ZN ZN . B ZN 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc8 C SG CYS 171 C CYS 169 1_555 I ZN ZN . C ZN 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc9 C SG CYS 174 C CYS 172 1_555 I ZN ZN . C ZN 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc10 C SG CYS 242 C CYS 240 1_555 I ZN ZN . C ZN 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc11 C SG CYS 245 C CYS 243 1_555 I ZN ZN . C ZN 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc12 D SG CYS 171 D CYS 169 1_555 K ZN ZN . D ZN 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc13 D SG CYS 174 D CYS 172 1_555 K ZN ZN . D ZN 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc14 D SG CYS 242 D CYS 240 1_555 K ZN ZN . D ZN 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc15 D SG CYS 245 D CYS 243 1_555 K ZN ZN . D ZN 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1ZFN 
_atom_sites.fract_transf_matrix[1][1]    0.002775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002775 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 252 245 ZN ZN . 
F 3 ATP A 1 253 3 ATP ATP . 
G 2 ZN B 1 252 245 ZN ZN . 
H 3 ATP B 1 253 4 ATP ATP . 
I 2 ZN C 1 345 245 ZN ZN . 
J 3 ATP C 1 346 1 ATP ATP . 
K 2 ZN D 1 445 245 ZN ZN . 
L 3 ATP D 1 446 2 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 3 -74.833 204.901 17.476 1 70.51 ? PG ATP 253 B 1 
HETATM 2 O O1G ATP . . . H 3 -75.656 206.075 17.561 1 67.7 ? O1G ATP 253 B 1 
HETATM 3 O O2G ATP . . . H 3 -74.143 204.425 16.11 1 69.13 ? O2G ATP 253 B 1 
HETATM 4 O O3G ATP . . . H 3 -73.923 205.179 18.645 1 70.03 ? O3G ATP 253 B 1 
HETATM 5 P PB ATP . . . H 3 -77.226 203.374 18.341 1 63.47 ? PB ATP 253 B 1 
HETATM 6 O O1B ATP . . . H 3 -77.905 204.227 19.37 1 63.66 ? O1B ATP 253 B 1 
HETATM 7 O O2B ATP . . . H 3 -78.143 202.411 17.624 1 64.83 ? O2B ATP 253 B 1 
HETATM 8 O O3B ATP . . . H 3 -75.704 203.6 17.876 1 67.95 ? O3B ATP 253 B 1 
HETATM 9 P PA ATP . . . H 3 -76.345 201.989 20.777 1 55.47 ? PA ATP 253 B 1 
HETATM 10 O O1A ATP . . . H 3 -76.014 200.63 20.984 1 60.32 ? O1A ATP 253 B 1 
HETATM 11 O O2A ATP . . . H 3 -75.634 203.076 21.63 1 58.12 ? O2A ATP 253 B 1 
HETATM 12 O O3A ATP . . . H 3 -76.433 202.18 19.166 1 62.34 ? O3A ATP 253 B 1 
HETATM 13 O O5' ATP . . . H 3 -77.857 202.154 21.066 1 56.61 ? O5' ATP 253 B 1 
HETATM 14 C C5' ATP . . . H 3 -78.592 201.268 21.761 1 53.22 ? C5' ATP 253 B 1 
HETATM 15 C C4' ATP . . . H 3 -80.066 201.182 21.331 1 50.55 ? C4' ATP 253 B 1 
HETATM 16 O O4' ATP . . . H 3 -81.104 201.482 22.199 1 49.57 ? O4' ATP 253 B 1 
HETATM 17 C C3' ATP . . . H 3 -80.423 201.894 19.958 1 48.97 ? C3' ATP 253 B 1 
HETATM 18 O O3' ATP . . . H 3 -80.72 200.981 18.93 1 47.95 ? O3' ATP 253 B 1 
HETATM 19 C C2' ATP . . . H 3 -81.384 202.927 20.529 1 49.73 ? C2' ATP 253 B 1 
HETATM 20 O O2' ATP . . . H 3 -82.249 203.292 19.485 1 51.38 ? O2' ATP 253 B 1 
HETATM 21 C C1' ATP . . . H 3 -82.097 202.222 21.589 1 49.36 ? C1' ATP 253 B 1 
HETATM 22 N N9 ATP . . . H 3 -82.75 202.999 22.661 1 48.1 ? N9 ATP 253 B 1 
HETATM 23 C C8 ATP . . . H 3 -82.276 204.041 23.411 1 48.44 ? C8 ATP 253 B 1 
HETATM 24 N N7 ATP . . . H 3 -83.213 204.425 24.297 1 46.15 ? N7 ATP 253 B 1 
HETATM 25 C C5 ATP . . . H 3 -84.28 203.631 24.116 1 47.21 ? C5 ATP 253 B 1 
HETATM 26 C C6 ATP . . . H 3 -85.552 203.559 24.749 1 48.64 ? C6 ATP 253 B 1 
HETATM 27 N N6 ATP . . . H 3 -85.941 204.315 25.785 1 49.81 ? N6 ATP 253 B 1 
HETATM 28 N N1 ATP . . . H 3 -86.45 202.596 24.299 1 48.53 ? N1 ATP 253 B 1 
HETATM 29 C C2 ATP . . . H 3 -86.133 201.721 23.257 1 47.8 ? C2 ATP 253 B 1 
HETATM 30 N N3 ATP . . . H 3 -84.887 201.806 22.662 1 46.69 ? N3 ATP 253 B 1 
HETATM 31 C C4 ATP . . . H 3 -83.992 202.746 23.078 1 47.55 ? C4 ATP 253 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#