data_1ZFP # _model_server_result.job_id g1zpg6eLXq_ruZXWH5bVGQ _model_server_result.datetime_utc '2024-10-12 19:25:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 1ZFP # _exptl.entry_id 1ZFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZFP _cell.length_a 49.9 _cell.length_b 113.7 _cell.length_c 46.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 B,E 3 1,3 A,C,D 3 4,5 B,E 4 1,6 A,C,D 4 7,8 A,B,C,D,E 5 1,9 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_568 x,-y+1,-z+3 1 0 0 0 -1 0 0 0 -1 0 113.7 139.8 3 'crystal symmetry operation' 4_558 x,-y,-z+3 1 0 0 0 -1 0 0 0 -1 0 0 139.8 4 'crystal symmetry operation' 5_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -24.95 -56.85 0 5 'crystal symmetry operation' 8_458 x-1/2,-y+1/2,-z+3 1 0 0 0 -1 0 0 0 -1 -24.95 56.85 139.8 6 'crystal symmetry operation' 4_559 x,-y,-z+4 1 0 0 0 -1 0 0 0 -1 0 0 186.4 7 'crystal symmetry operation' 6_655 -x+3/2,-y+1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 74.85 56.85 23.3 8 'crystal symmetry operation' 7_648 -x+3/2,y-1/2,-z+7/2 -1 0 0 0 1 0 0 0 -1 74.85 -56.85 163.1 9 'crystal symmetry operation' 3_758 -x+2,y,-z+7/2 -1 0 0 0 1 0 0 0 -1 99.8 0 163.1 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C BE2 1 I BE2 1 1_555 B N GLU 2 I GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 B C GLU 2 I GLU 2 1_555 B N PTR 3 I PTR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C PTR 3 I PTR 3 1_555 B N ILE 4 I ILE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 B C GLN 6 I GLN 6 1_555 B N NH2 7 I NH2 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? metalc ? metalc1 C ZN ZN . E ZN 1 1_555 A NE2 HIS 24 E HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 C ZN ZN . E ZN 1 1_555 A OE2 GLU 97 E GLU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 C ZN ZN . E ZN 1 1_555 A OE1 GLU 97 E GLU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZFP _atom_sites.fract_transf_matrix[1][1] 0.02004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN E 1 1 1 ZN ZN . D 4 HOH E 1 154 1 HOH HOH . D 4 HOH E 2 155 2 HOH HOH . D 4 HOH E 3 156 3 HOH HOH . D 4 HOH E 4 157 4 HOH HOH . D 4 HOH E 5 158 5 HOH HOH . D 4 HOH E 6 159 6 HOH HOH . D 4 HOH E 7 160 7 HOH HOH . D 4 HOH E 8 161 8 HOH HOH . D 4 HOH E 9 162 9 HOH HOH . D 4 HOH E 10 163 10 HOH HOH . D 4 HOH E 11 164 11 HOH HOH . D 4 HOH E 12 165 12 HOH HOH . D 4 HOH E 13 166 13 HOH HOH . D 4 HOH E 14 167 14 HOH HOH . D 4 HOH E 15 168 16 HOH HOH . D 4 HOH E 16 169 17 HOH HOH . D 4 HOH E 17 170 18 HOH HOH . D 4 HOH E 18 171 19 HOH HOH . D 4 HOH E 19 172 20 HOH HOH . D 4 HOH E 20 173 21 HOH HOH . D 4 HOH E 21 174 22 HOH HOH . D 4 HOH E 22 175 23 HOH HOH . D 4 HOH E 23 176 24 HOH HOH . D 4 HOH E 24 177 25 HOH HOH . D 4 HOH E 25 178 26 HOH HOH . D 4 HOH E 26 179 27 HOH HOH . D 4 HOH E 27 180 28 HOH HOH . D 4 HOH E 28 181 29 HOH HOH . D 4 HOH E 29 182 30 HOH HOH . D 4 HOH E 30 183 31 HOH HOH . D 4 HOH E 31 184 32 HOH HOH . D 4 HOH E 32 185 33 HOH HOH . D 4 HOH E 33 186 34 HOH HOH . D 4 HOH E 34 187 35 HOH HOH . D 4 HOH E 35 188 36 HOH HOH . D 4 HOH E 36 189 37 HOH HOH . D 4 HOH E 37 190 38 HOH HOH . D 4 HOH E 38 191 39 HOH HOH . D 4 HOH E 39 192 40 HOH HOH . D 4 HOH E 40 193 41 HOH HOH . D 4 HOH E 41 194 42 HOH HOH . D 4 HOH E 42 195 43 HOH HOH . D 4 HOH E 43 196 44 HOH HOH . D 4 HOH E 44 197 45 HOH HOH . D 4 HOH E 45 198 46 HOH HOH . D 4 HOH E 46 199 47 HOH HOH . D 4 HOH E 47 200 48 HOH HOH . D 4 HOH E 48 201 49 HOH HOH . D 4 HOH E 49 202 50 HOH HOH . D 4 HOH E 50 203 51 HOH HOH . D 4 HOH E 51 204 53 HOH HOH . D 4 HOH E 52 205 54 HOH HOH . D 4 HOH E 53 206 55 HOH HOH . D 4 HOH E 54 207 56 HOH HOH . D 4 HOH E 55 208 57 HOH HOH . D 4 HOH E 56 209 58 HOH HOH . D 4 HOH E 57 210 59 HOH HOH . D 4 HOH E 58 211 60 HOH HOH . D 4 HOH E 59 212 61 HOH HOH . D 4 HOH E 60 213 62 HOH HOH . D 4 HOH E 61 214 63 HOH HOH . D 4 HOH E 62 215 64 HOH HOH . D 4 HOH E 63 216 65 HOH HOH . D 4 HOH E 64 217 66 HOH HOH . D 4 HOH E 65 218 67 HOH HOH . D 4 HOH E 66 219 68 HOH HOH . D 4 HOH E 67 220 69 HOH HOH . D 4 HOH E 68 221 71 HOH HOH . D 4 HOH E 69 222 72 HOH HOH . D 4 HOH E 70 223 73 HOH HOH . D 4 HOH E 71 224 74 HOH HOH . D 4 HOH E 72 225 75 HOH HOH . D 4 HOH E 73 226 76 HOH HOH . D 4 HOH E 74 227 77 HOH HOH . D 4 HOH E 75 228 78 HOH HOH . D 4 HOH E 76 229 79 HOH HOH . D 4 HOH E 77 230 80 HOH HOH . D 4 HOH E 78 231 81 HOH HOH . D 4 HOH E 79 232 82 HOH HOH . D 4 HOH E 80 233 83 HOH HOH . D 4 HOH E 81 234 84 HOH HOH . D 4 HOH E 82 235 85 HOH HOH . D 4 HOH E 83 236 86 HOH HOH . D 4 HOH E 84 237 87 HOH HOH . D 4 HOH E 85 238 88 HOH HOH . D 4 HOH E 86 239 89 HOH HOH . D 4 HOH E 87 240 90 HOH HOH . D 4 HOH E 88 241 91 HOH HOH . D 4 HOH E 89 242 92 HOH HOH . D 4 HOH E 90 243 93 HOH HOH . D 4 HOH E 91 244 94 HOH HOH . D 4 HOH E 92 245 95 HOH HOH . D 4 HOH E 93 246 96 HOH HOH . D 4 HOH E 94 247 98 HOH HOH . D 4 HOH E 95 248 99 HOH HOH . D 4 HOH E 96 249 100 HOH HOH . D 4 HOH E 97 250 101 HOH HOH . E 4 HOH I 1 15 15 HOH HOH . E 4 HOH I 2 52 52 HOH HOH . E 4 HOH I 3 70 70 HOH HOH . E 4 HOH I 4 97 97 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 39.075 _atom_site.Cartn_y 56.77 _atom_site.Cartn_z 70.104 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 58.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #