data_1ZG3 # _model_server_result.job_id 2E1515CUni6uCHCdCh8XNA _model_server_result.datetime_utc '2024-11-24 10:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3994}' # _entry.id 1ZG3 # _exptl.entry_id 1ZG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZG3 _cell.length_a 72.106 _cell.length_b 72.106 _cell.length_c 188.398 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_575 x,-y+2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 144.212 94.199 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 311 n n N HN1 SAH sing 312 n n N HN2 SAH sing 313 n n CA CB SAH sing 314 n n CA C SAH sing 315 n n CA HA SAH sing 316 n n CB CG SAH sing 317 n n CB HB1 SAH sing 318 n n CB HB2 SAH sing 319 n n CG SD SAH sing 320 n n CG HG1 SAH sing 321 n n CG HG2 SAH sing 322 n n SD C5' SAH sing 323 n n C O SAH doub 324 n n C OXT SAH sing 325 n n OXT HXT SAH sing 326 n n C5' C4' SAH sing 327 n n C5' "H5'1" SAH sing 328 n n C5' "H5'2" SAH sing 329 n n C4' O4' SAH sing 330 n n C4' C3' SAH sing 331 n n C4' H4' SAH sing 332 n n O4' C1' SAH sing 333 n n C3' O3' SAH sing 334 n n C3' C2' SAH sing 335 n n C3' H3' SAH sing 336 n n O3' HO3' SAH sing 337 n n C2' O2' SAH sing 338 n n C2' C1' SAH sing 339 n n C2' H2' SAH sing 340 n n O2' HO2' SAH sing 341 n n C1' N9 SAH sing 342 n n C1' H1' SAH sing 343 n n N9 C8 SAH sing 344 n y N9 C4 SAH sing 345 n y C8 N7 SAH doub 346 n y C8 H8 SAH sing 347 n n N7 C5 SAH sing 348 n y C5 C6 SAH sing 349 n y C5 C4 SAH doub 350 n y C6 N6 SAH sing 351 n n C6 N1 SAH doub 352 n y N6 HN61 SAH sing 353 n n N6 HN62 SAH sing 354 n n N1 C2 SAH sing 355 n y C2 N3 SAH doub 356 n y C2 H2 SAH sing 357 n n N3 C4 SAH sing 358 n y # _atom_sites.entry_id 1ZG3 _atom_sites.fract_transf_matrix[1][1] 0.013868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2HI A 1 365 365 2HI 2HI . C 3 SAH A 1 3994 3994 SAH SAH . D 4 HOH A 1 3995 1 HOH TIP . D 4 HOH A 2 3996 2 HOH TIP . D 4 HOH A 3 3997 3 HOH TIP . D 4 HOH A 4 3998 4 HOH TIP . D 4 HOH A 5 3999 5 HOH TIP . D 4 HOH A 6 4000 6 HOH TIP . D 4 HOH A 7 4001 7 HOH TIP . D 4 HOH A 8 4002 8 HOH TIP . D 4 HOH A 9 4003 9 HOH TIP . D 4 HOH A 10 4004 10 HOH TIP . D 4 HOH A 11 4005 11 HOH TIP . D 4 HOH A 12 4006 12 HOH TIP . D 4 HOH A 13 4007 13 HOH TIP . D 4 HOH A 14 4008 14 HOH TIP . D 4 HOH A 15 4009 15 HOH TIP . D 4 HOH A 16 4010 16 HOH TIP . D 4 HOH A 17 4011 17 HOH TIP . D 4 HOH A 18 4012 18 HOH TIP . D 4 HOH A 19 4013 19 HOH TIP . D 4 HOH A 20 4014 20 HOH TIP . D 4 HOH A 21 4015 21 HOH TIP . D 4 HOH A 22 4016 22 HOH TIP . D 4 HOH A 23 4017 23 HOH TIP . D 4 HOH A 24 4018 24 HOH TIP . D 4 HOH A 25 4019 25 HOH TIP . D 4 HOH A 26 4020 26 HOH TIP . D 4 HOH A 27 4021 27 HOH TIP . D 4 HOH A 28 4022 28 HOH TIP . D 4 HOH A 29 4023 29 HOH TIP . D 4 HOH A 30 4024 30 HOH TIP . D 4 HOH A 31 4025 31 HOH TIP . D 4 HOH A 32 4026 32 HOH TIP . D 4 HOH A 33 4027 33 HOH TIP . D 4 HOH A 34 4028 34 HOH TIP . D 4 HOH A 35 4029 35 HOH TIP . D 4 HOH A 36 4030 36 HOH TIP . D 4 HOH A 37 4031 37 HOH TIP . D 4 HOH A 38 4032 38 HOH TIP . D 4 HOH A 39 4033 39 HOH TIP . D 4 HOH A 40 4034 40 HOH TIP . D 4 HOH A 41 4035 41 HOH TIP . D 4 HOH A 42 4036 42 HOH TIP . D 4 HOH A 43 4037 43 HOH TIP . D 4 HOH A 44 4038 44 HOH TIP . D 4 HOH A 45 4039 45 HOH TIP . D 4 HOH A 46 4040 46 HOH TIP . D 4 HOH A 47 4041 47 HOH TIP . D 4 HOH A 48 4042 48 HOH TIP . D 4 HOH A 49 4043 49 HOH TIP . D 4 HOH A 50 4044 50 HOH TIP . D 4 HOH A 51 4045 51 HOH TIP . D 4 HOH A 52 4046 52 HOH TIP . D 4 HOH A 53 4047 53 HOH TIP . D 4 HOH A 54 4048 54 HOH TIP . D 4 HOH A 55 4049 55 HOH TIP . D 4 HOH A 56 4050 56 HOH TIP . D 4 HOH A 57 4051 57 HOH TIP . D 4 HOH A 58 4052 58 HOH TIP . D 4 HOH A 59 4053 59 HOH TIP . D 4 HOH A 60 4054 60 HOH TIP . D 4 HOH A 61 4055 61 HOH TIP . D 4 HOH A 62 4056 62 HOH TIP . D 4 HOH A 63 4057 63 HOH TIP . D 4 HOH A 64 4058 64 HOH TIP . D 4 HOH A 65 4059 65 HOH TIP . D 4 HOH A 66 4060 67 HOH TIP . D 4 HOH A 67 4061 68 HOH TIP . D 4 HOH A 68 4062 69 HOH TIP . D 4 HOH A 69 4063 70 HOH TIP . D 4 HOH A 70 4064 71 HOH TIP . D 4 HOH A 71 4065 72 HOH TIP . D 4 HOH A 72 4066 73 HOH TIP . D 4 HOH A 73 4067 74 HOH TIP . D 4 HOH A 74 4068 75 HOH TIP . D 4 HOH A 75 4069 76 HOH TIP . D 4 HOH A 76 4070 77 HOH TIP . D 4 HOH A 77 4071 79 HOH TIP . D 4 HOH A 78 4072 80 HOH TIP . D 4 HOH A 79 4073 81 HOH TIP . D 4 HOH A 80 4074 82 HOH TIP . D 4 HOH A 81 4075 83 HOH TIP . D 4 HOH A 82 4076 84 HOH TIP . D 4 HOH A 83 4077 85 HOH TIP . D 4 HOH A 84 4078 86 HOH TIP . D 4 HOH A 85 4079 87 HOH TIP . D 4 HOH A 86 4080 88 HOH TIP . D 4 HOH A 87 4081 89 HOH TIP . D 4 HOH A 88 4082 90 HOH TIP . D 4 HOH A 89 4083 91 HOH TIP . D 4 HOH A 90 4084 92 HOH TIP . D 4 HOH A 91 4085 93 HOH TIP . D 4 HOH A 92 4086 94 HOH TIP . D 4 HOH A 93 4087 95 HOH TIP . D 4 HOH A 94 4088 96 HOH TIP . D 4 HOH A 95 4089 97 HOH TIP . D 4 HOH A 96 4090 98 HOH TIP . D 4 HOH A 97 4091 99 HOH TIP . D 4 HOH A 98 4092 100 HOH TIP . D 4 HOH A 99 4093 102 HOH TIP . D 4 HOH A 100 4094 103 HOH TIP . D 4 HOH A 101 4095 104 HOH TIP . D 4 HOH A 102 4096 105 HOH TIP . D 4 HOH A 103 4097 106 HOH TIP . D 4 HOH A 104 4098 107 HOH TIP . D 4 HOH A 105 4099 109 HOH TIP . D 4 HOH A 106 4100 110 HOH TIP . D 4 HOH A 107 4101 111 HOH TIP . D 4 HOH A 108 4102 112 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 107.389 76.733 16.405 1 68.04 ? N SAH 3994 A 1 HETATM 2 C CA SAH . . . C 3 106.138 77.028 17.236 1 68.97 ? CA SAH 3994 A 1 HETATM 3 C CB SAH . . . C 3 105.542 75.929 18.053 1 69.29 ? CB SAH 3994 A 1 HETATM 4 C CG SAH . . . C 3 105.134 74.639 17.402 1 68.52 ? CG SAH 3994 A 1 HETATM 5 S SD SAH . . . C 3 103.324 74.75 17.105 1 70.53 ? SD SAH 3994 A 1 HETATM 6 C C SAH . . . C 3 106.473 78.247 18.184 1 68.85 ? C SAH 3994 A 1 HETATM 7 O O SAH . . . C 3 107.607 78.757 18.145 1 69.51 ? O SAH 3994 A 1 HETATM 8 O OXT SAH . . . C 3 105.511 78.635 18.958 1 68.56 ? OXT SAH 3994 A 1 HETATM 9 C C5' SAH . . . C 3 103.129 73.281 16.219 1 65.45 ? C5' SAH 3994 A 1 HETATM 10 C C4' SAH . . . C 3 102.79 73.637 14.719 1 62.62 ? C4' SAH 3994 A 1 HETATM 11 O O4' SAH . . . C 3 102.706 72.375 14.094 1 61.97 ? O4' SAH 3994 A 1 HETATM 12 C C3' SAH . . . C 3 101.441 74.263 14.428 1 60.89 ? C3' SAH 3994 A 1 HETATM 13 O O3' SAH . . . C 3 101.582 75.634 14.044 1 58.07 ? O3' SAH 3994 A 1 HETATM 14 C C2' SAH . . . C 3 100.868 73.308 13.298 1 59.43 ? C2' SAH 3994 A 1 HETATM 15 O O2' SAH . . . C 3 100.121 74.002 12.311 1 56.57 ? O2' SAH 3994 A 1 HETATM 16 C C1' SAH . . . C 3 102.139 72.636 12.785 1 59.05 ? C1' SAH 3994 A 1 HETATM 17 N N9 SAH . . . C 3 101.996 71.487 12.137 1 57.25 ? N9 SAH 3994 A 1 HETATM 18 C C8 SAH . . . C 3 101.279 70.318 12.348 1 56.91 ? C8 SAH 3994 A 1 HETATM 19 N N7 SAH . . . C 3 101.44 69.41 11.432 1 56.56 ? N7 SAH 3994 A 1 HETATM 20 C C5 SAH . . . C 3 102.351 70.004 10.506 1 55.21 ? C5 SAH 3994 A 1 HETATM 21 C C6 SAH . . . C 3 102.926 69.512 9.279 1 54.51 ? C6 SAH 3994 A 1 HETATM 22 N N6 SAH . . . C 3 102.668 68.299 8.769 1 52.17 ? N6 SAH 3994 A 1 HETATM 23 N N1 SAH . . . C 3 103.782 70.394 8.645 1 52.98 ? N1 SAH 3994 A 1 HETATM 24 C C2 SAH . . . C 3 104.075 71.638 9.127 1 53.8 ? C2 SAH 3994 A 1 HETATM 25 N N3 SAH . . . C 3 103.547 72.141 10.295 1 54.46 ? N3 SAH 3994 A 1 HETATM 26 C C4 SAH . . . C 3 102.695 71.268 10.925 1 55.72 ? C4 SAH 3994 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #