data_1ZGB # _model_server_result.job_id 3AIQSOBEdUn7H1YxCMc5ew _model_server_result.datetime_utc '2025-04-27 07:06:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":591}' # _entry.id 1ZGB # _exptl.entry_id 1ZGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZGB _cell.length_a 111.449 _cell.length_b 111.449 _cell.length_c 137.095 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.7245 96.517665 45.698333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 B C1 NAG . A NAG 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale2 A ND2 ASN 416 A ASN 416 1_555 C C1 NAG . A NAG 4161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 322 n n C1 O1 NAG sing 323 n n C1 O5 NAG sing 324 n n C1 H1 NAG sing 325 n n C2 C3 NAG sing 326 n n C2 N2 NAG sing 327 n n C2 H2 NAG sing 328 n n C3 C4 NAG sing 329 n n C3 O3 NAG sing 330 n n C3 H3 NAG sing 331 n n C4 C5 NAG sing 332 n n C4 O4 NAG sing 333 n n C4 H4 NAG sing 334 n n C5 C6 NAG sing 335 n n C5 O5 NAG sing 336 n n C5 H5 NAG sing 337 n n C6 O6 NAG sing 338 n n C6 H61 NAG sing 339 n n C6 H62 NAG sing 340 n n C7 C8 NAG sing 341 n n C7 N2 NAG sing 342 n n C7 O7 NAG doub 343 n n C8 H81 NAG sing 344 n n C8 H82 NAG sing 345 n n C8 H83 NAG sing 346 n n N2 HN2 NAG sing 347 n n O1 HO1 NAG sing 348 n n O3 HO3 NAG sing 349 n n O4 HO4 NAG sing 350 n n O6 HO6 NAG sing 351 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1ZGB _atom_sites.fract_transf_matrix[1][1] 0.008973 _atom_sites.fract_transf_matrix[1][2] 0.00518 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 591 591 NAG NAG . C 2 NAG A 1 4161 4161 NAG NAG . D 3 A1E A 1 1001 1001 A1E A1E . E 4 HOH A 1 4162 1 HOH HOH . E 4 HOH A 2 4163 2 HOH HOH . E 4 HOH A 3 4164 3 HOH HOH . E 4 HOH A 4 4165 4 HOH HOH . E 4 HOH A 5 4166 5 HOH HOH . E 4 HOH A 6 4167 6 HOH HOH . E 4 HOH A 7 4168 7 HOH HOH . E 4 HOH A 8 4169 8 HOH HOH . E 4 HOH A 9 4170 9 HOH HOH . E 4 HOH A 10 4171 10 HOH HOH . E 4 HOH A 11 4172 11 HOH HOH . E 4 HOH A 12 4173 12 HOH HOH . E 4 HOH A 13 4174 13 HOH HOH . E 4 HOH A 14 4175 14 HOH HOH . E 4 HOH A 15 4176 15 HOH HOH . E 4 HOH A 16 4177 16 HOH HOH . E 4 HOH A 17 4178 17 HOH HOH . E 4 HOH A 18 4179 18 HOH HOH . E 4 HOH A 19 4180 19 HOH HOH . E 4 HOH A 20 4181 20 HOH HOH . E 4 HOH A 21 4182 21 HOH HOH . E 4 HOH A 22 4183 22 HOH HOH . E 4 HOH A 23 4184 23 HOH HOH . E 4 HOH A 24 4185 24 HOH HOH . E 4 HOH A 25 4186 25 HOH HOH . E 4 HOH A 26 4187 26 HOH HOH . E 4 HOH A 27 4188 27 HOH HOH . E 4 HOH A 28 4189 28 HOH HOH . E 4 HOH A 29 4190 29 HOH HOH . E 4 HOH A 30 4191 30 HOH HOH . E 4 HOH A 31 4192 31 HOH HOH . E 4 HOH A 32 4193 32 HOH HOH . E 4 HOH A 33 4194 33 HOH HOH . E 4 HOH A 34 4195 34 HOH HOH . E 4 HOH A 35 4196 35 HOH HOH . E 4 HOH A 36 4197 36 HOH HOH . E 4 HOH A 37 4198 37 HOH HOH . E 4 HOH A 38 4199 38 HOH HOH . E 4 HOH A 39 4200 39 HOH HOH . E 4 HOH A 40 4201 40 HOH HOH . E 4 HOH A 41 4202 41 HOH HOH . E 4 HOH A 42 4203 42 HOH HOH . E 4 HOH A 43 4204 43 HOH HOH . E 4 HOH A 44 4205 44 HOH HOH . E 4 HOH A 45 4206 45 HOH HOH . E 4 HOH A 46 4207 46 HOH HOH . E 4 HOH A 47 4208 47 HOH HOH . E 4 HOH A 48 4209 48 HOH HOH . E 4 HOH A 49 4210 49 HOH HOH . E 4 HOH A 50 4211 50 HOH HOH . E 4 HOH A 51 4212 51 HOH HOH . E 4 HOH A 52 4213 52 HOH HOH . E 4 HOH A 53 4214 53 HOH HOH . E 4 HOH A 54 4215 54 HOH HOH . E 4 HOH A 55 4216 55 HOH HOH . E 4 HOH A 56 4217 56 HOH HOH . E 4 HOH A 57 4218 57 HOH HOH . E 4 HOH A 58 4219 58 HOH HOH . E 4 HOH A 59 4220 59 HOH HOH . E 4 HOH A 60 4221 60 HOH HOH . E 4 HOH A 61 4222 61 HOH HOH . E 4 HOH A 62 4223 62 HOH HOH . E 4 HOH A 63 4224 63 HOH HOH . E 4 HOH A 64 4225 64 HOH HOH . E 4 HOH A 65 4226 65 HOH HOH . E 4 HOH A 66 4227 66 HOH HOH . E 4 HOH A 67 4228 67 HOH HOH . E 4 HOH A 68 4229 68 HOH HOH . E 4 HOH A 69 4230 69 HOH HOH . E 4 HOH A 70 4231 70 HOH HOH . E 4 HOH A 71 4232 71 HOH HOH . E 4 HOH A 72 4233 72 HOH HOH . E 4 HOH A 73 4234 73 HOH HOH . E 4 HOH A 74 4235 74 HOH HOH . E 4 HOH A 75 4236 75 HOH HOH . E 4 HOH A 76 4237 76 HOH HOH . E 4 HOH A 77 4238 77 HOH HOH . E 4 HOH A 78 4239 78 HOH HOH . E 4 HOH A 79 4240 79 HOH HOH . E 4 HOH A 80 4241 80 HOH HOH . E 4 HOH A 81 4242 81 HOH HOH . E 4 HOH A 82 4243 82 HOH HOH . E 4 HOH A 83 4244 83 HOH HOH . E 4 HOH A 84 4245 84 HOH HOH . E 4 HOH A 85 4246 85 HOH HOH . E 4 HOH A 86 4247 86 HOH HOH . E 4 HOH A 87 4248 87 HOH HOH . E 4 HOH A 88 4249 88 HOH HOH . E 4 HOH A 89 4250 89 HOH HOH . E 4 HOH A 90 4251 90 HOH HOH . E 4 HOH A 91 4252 91 HOH HOH . E 4 HOH A 92 4253 92 HOH HOH . E 4 HOH A 93 4254 93 HOH HOH . E 4 HOH A 94 4255 94 HOH HOH . E 4 HOH A 95 4256 95 HOH HOH . E 4 HOH A 96 4257 96 HOH HOH . E 4 HOH A 97 4258 97 HOH HOH . E 4 HOH A 98 4259 98 HOH HOH . E 4 HOH A 99 4260 99 HOH HOH . E 4 HOH A 100 4261 100 HOH HOH . E 4 HOH A 101 4262 101 HOH HOH . E 4 HOH A 102 4263 102 HOH HOH . E 4 HOH A 103 4264 103 HOH HOH . E 4 HOH A 104 4265 104 HOH HOH . E 4 HOH A 105 4266 105 HOH HOH . E 4 HOH A 106 4267 106 HOH HOH . E 4 HOH A 107 4268 107 HOH HOH . E 4 HOH A 108 4269 108 HOH HOH . E 4 HOH A 109 4270 109 HOH HOH . E 4 HOH A 110 4271 110 HOH HOH . E 4 HOH A 111 4272 111 HOH HOH . E 4 HOH A 112 4273 112 HOH HOH . E 4 HOH A 113 4274 113 HOH HOH . E 4 HOH A 114 4275 114 HOH HOH . E 4 HOH A 115 4276 115 HOH HOH . E 4 HOH A 116 4277 116 HOH HOH . E 4 HOH A 117 4278 117 HOH HOH . E 4 HOH A 118 4279 118 HOH HOH . E 4 HOH A 119 4280 119 HOH HOH . E 4 HOH A 120 4281 120 HOH HOH . E 4 HOH A 121 4282 121 HOH HOH . E 4 HOH A 122 4283 122 HOH HOH . E 4 HOH A 123 4284 123 HOH HOH . E 4 HOH A 124 4285 124 HOH HOH . E 4 HOH A 125 4286 125 HOH HOH . E 4 HOH A 126 4287 126 HOH HOH . E 4 HOH A 127 4288 127 HOH HOH . E 4 HOH A 128 4289 128 HOH HOH . E 4 HOH A 129 4290 129 HOH HOH . E 4 HOH A 130 4291 130 HOH HOH . E 4 HOH A 131 4292 131 HOH HOH . E 4 HOH A 132 4293 132 HOH HOH . E 4 HOH A 133 4294 133 HOH HOH . E 4 HOH A 134 4295 134 HOH HOH . E 4 HOH A 135 4296 135 HOH HOH . E 4 HOH A 136 4297 136 HOH HOH . E 4 HOH A 137 4298 137 HOH HOH . E 4 HOH A 138 4299 138 HOH HOH . E 4 HOH A 139 4300 139 HOH HOH . E 4 HOH A 140 4301 140 HOH HOH . E 4 HOH A 141 4302 141 HOH HOH . E 4 HOH A 142 4303 142 HOH HOH . E 4 HOH A 143 4304 143 HOH HOH . E 4 HOH A 144 4305 144 HOH HOH . E 4 HOH A 145 4306 145 HOH HOH . E 4 HOH A 146 4307 146 HOH HOH . E 4 HOH A 147 4308 147 HOH HOH . E 4 HOH A 148 4309 148 HOH HOH . E 4 HOH A 149 4310 149 HOH HOH . E 4 HOH A 150 4311 150 HOH HOH . E 4 HOH A 151 4312 151 HOH HOH . E 4 HOH A 152 4313 152 HOH HOH . E 4 HOH A 153 4314 153 HOH HOH . E 4 HOH A 154 4315 154 HOH HOH . E 4 HOH A 155 4316 155 HOH HOH . E 4 HOH A 156 4317 156 HOH HOH . E 4 HOH A 157 4318 157 HOH HOH . E 4 HOH A 158 4319 158 HOH HOH . E 4 HOH A 159 4320 159 HOH HOH . E 4 HOH A 160 4321 160 HOH HOH . E 4 HOH A 161 4322 161 HOH HOH . E 4 HOH A 162 4323 162 HOH HOH . E 4 HOH A 163 4324 163 HOH HOH . E 4 HOH A 164 4325 164 HOH HOH . E 4 HOH A 165 4326 165 HOH HOH . E 4 HOH A 166 4327 166 HOH HOH . E 4 HOH A 167 4328 167 HOH HOH . E 4 HOH A 168 4329 168 HOH HOH . E 4 HOH A 169 4330 169 HOH HOH . E 4 HOH A 170 4331 170 HOH HOH . E 4 HOH A 171 4332 171 HOH HOH . E 4 HOH A 172 4333 172 HOH HOH . E 4 HOH A 173 4334 173 HOH HOH . E 4 HOH A 174 4335 174 HOH HOH . E 4 HOH A 175 4336 175 HOH HOH . E 4 HOH A 176 4337 176 HOH HOH . E 4 HOH A 177 4338 177 HOH HOH . E 4 HOH A 178 4339 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -18.594 83.402 50.084 1 68 ? C1 NAG 591 A 1 HETATM 2 C C2 NAG . . . B 2 -19.57 84.56 49.8 1 71.27 ? C2 NAG 591 A 1 HETATM 3 C C3 NAG . . . B 2 -19.19 85.804 50.623 1 73.74 ? C3 NAG 591 A 1 HETATM 4 C C4 NAG . . . B 2 -19.151 85.449 52.123 1 74.58 ? C4 NAG 591 A 1 HETATM 5 C C5 NAG . . . B 2 -18.283 84.185 52.395 1 72.87 ? C5 NAG 591 A 1 HETATM 6 C C6 NAG . . . B 2 -18.416 83.712 53.858 1 72.16 ? C6 NAG 591 A 1 HETATM 7 C C7 NAG . . . B 2 -20.76 84.613 47.711 1 72.32 ? C7 NAG 591 A 1 HETATM 8 C C8 NAG . . . B 2 -20.997 85.422 46.444 1 71.33 ? C8 NAG 591 A 1 HETATM 9 N N2 NAG . . . B 2 -19.642 84.88 48.387 1 71.15 ? N2 NAG 591 A 1 HETATM 10 O O3 NAG . . . B 2 -20.16 86.837 50.405 1 74.81 ? O3 NAG 591 A 1 HETATM 11 O O4 NAG . . . B 2 -18.656 86.569 52.872 1 76.83 ? O4 NAG 591 A 1 HETATM 12 O O5 NAG . . . B 2 -18.673 83.076 51.509 1 71.47 ? O5 NAG 591 A 1 HETATM 13 O O6 NAG . . . B 2 -19.007 82.417 53.988 1 71.43 ? O6 NAG 591 A 1 HETATM 14 O O7 NAG . . . B 2 -21.589 83.749 48.067 1 71.64 ? O7 NAG 591 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 14 #