data_1ZGJ # _model_server_result.job_id 0pXEnEb8JPz-EKYcyPYkyg _model_server_result.datetime_utc '2024-11-24 13:59:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":0}' # _entry.id 1ZGJ # _exptl.entry_id 1ZGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6AR,12AR)-3-(HYDROXYMETHYL)-6H-[1,3]DIOXOLO[5,6][1]BENZOFURO[3,2-C]CHROMEN-6A(12AH)-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZGJ _cell.length_a 71.786 _cell.length_b 71.786 _cell.length_c 188.697 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_575 x,-y+2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 143.572 94.3485 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H14 O6' _chem_comp.formula_weight 314.289 _chem_comp.id P1S _chem_comp.mon_nstd_flag . _chem_comp.name (6AR,12AR)-3-(HYDROXYMETHYL)-6H-[1,3]DIOXOLO[5,6][1]BENZOFURO[3,2-C]CHROMEN-6A(12AH)-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PISATIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 P1S sing 237 n n C1 C5 P1S sing 238 n n C1 H11 P1S sing 239 n n C1 H12A P1S sing 240 n n O1 C2 P1S sing 241 n n C2 C3 P1S sing 242 n y C2 C6 P1S doub 243 n y C3 C4 P1S sing 244 n n C3 C9 P1S doub 245 n y C4 C5 P1S sing 246 n n C4 O2 P1S sing 247 n n C4 H4 P1S sing 248 n n C5 C11 P1S sing 249 n n C5 O5 P1S sing 250 n n C6 C7 P1S sing 251 n y C6 H6 P1S sing 252 n n C7 C8 P1S doub 253 n y C7 C17 P1S sing 254 n n C8 C9 P1S sing 255 n y C8 H8 P1S sing 256 n n C9 H9 P1S sing 257 n n O2 C10 P1S sing 258 n n C10 C11 P1S sing 259 n y C10 C12 P1S doub 260 n y C11 C15 P1S doub 261 n y C12 C13 P1S sing 262 n y C12 H12 P1S sing 263 n n C13 C14 P1S doub 264 n y C13 O3 P1S sing 265 n n C14 C15 P1S sing 266 n y C14 O4 P1S sing 267 n n C15 H15 P1S sing 268 n n O3 C16 P1S sing 269 n n C16 O4 P1S sing 270 n n C16 H161 P1S sing 271 n n C16 H162 P1S sing 272 n n O5 HO5 P1S sing 273 n n C17 O6 P1S sing 274 n n C17 H171 P1S sing 275 n n C17 H172 P1S sing 276 n n O6 HO6 P1S sing 277 n n # _atom_sites.entry_id 1ZGJ _atom_sites.fract_transf_matrix[1][1] 0.01393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P1S A 1 0 0 P1S PIS . C 3 SAH A 1 3994 3994 SAH SAH . D 4 HOH A 1 3995 1 HOH HOH . D 4 HOH A 2 3996 2 HOH HOH . D 4 HOH A 3 3997 3 HOH HOH . D 4 HOH A 4 3998 4 HOH HOH . D 4 HOH A 5 3999 5 HOH HOH . D 4 HOH A 6 4000 6 HOH HOH . D 4 HOH A 7 4001 7 HOH HOH . D 4 HOH A 8 4002 8 HOH HOH . D 4 HOH A 9 4003 9 HOH HOH . D 4 HOH A 10 4004 10 HOH HOH . D 4 HOH A 11 4005 11 HOH HOH . D 4 HOH A 12 4006 12 HOH HOH . D 4 HOH A 13 4007 13 HOH HOH . D 4 HOH A 14 4008 14 HOH HOH . D 4 HOH A 15 4009 15 HOH HOH . D 4 HOH A 16 4010 16 HOH HOH . D 4 HOH A 17 4011 17 HOH HOH . D 4 HOH A 18 4012 18 HOH HOH . D 4 HOH A 19 4013 19 HOH HOH . D 4 HOH A 20 4014 20 HOH HOH . D 4 HOH A 21 4015 21 HOH HOH . D 4 HOH A 22 4016 22 HOH HOH . D 4 HOH A 23 4017 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P1S . . . B 2 30.566 73.56 33 1 66.67 ? C1 P1S 0 A 1 HETATM 2 O O1 P1S . . . B 2 30.144 73.817 31.661 1 67.28 ? O1 P1S 0 A 1 HETATM 3 C C2 P1S . . . B 2 31.03 74.663 30.981 1 68.29 ? C2 P1S 0 A 1 HETATM 4 C C3 P1S . . . B 2 31.665 75.789 31.669 1 68.27 ? C3 P1S 0 A 1 HETATM 5 C C4 P1S . . . B 2 31.347 76.056 33.159 1 67.35 ? C4 P1S 0 A 1 HETATM 6 C C5 P1S . . . B 2 30.559 74.852 33.825 1 66.73 ? C5 P1S 0 A 1 HETATM 7 C C6 P1S . . . B 2 31.34 74.458 29.592 1 68.38 ? C6 P1S 0 A 1 HETATM 8 C C7 P1S . . . B 2 32.24 75.324 28.883 1 68.2 ? C7 P1S 0 A 1 HETATM 9 C C8 P1S . . . B 2 32.845 76.42 29.583 1 67.98 ? C8 P1S 0 A 1 HETATM 10 C C9 P1S . . . B 2 32.561 76.65 30.958 1 67.89 ? C9 P1S 0 A 1 HETATM 11 O O2 P1S . . . B 2 30.469 77.187 33.11 1 66.7 ? O2 P1S 0 A 1 HETATM 12 C C10 P1S . . . B 2 29.229 76.858 33.624 1 66.17 ? C10 P1S 0 A 1 HETATM 13 C C11 P1S . . . B 2 29.203 75.495 34.063 1 66.03 ? C11 P1S 0 A 1 HETATM 14 C C12 P1S . . . B 2 28.1 77.725 33.721 1 65.65 ? C12 P1S 0 A 1 HETATM 15 C C13 P1S . . . B 2 26.932 77.153 34.283 1 64.93 ? C13 P1S 0 A 1 HETATM 16 C C14 P1S . . . B 2 26.891 75.798 34.727 1 65.37 ? C14 P1S 0 A 1 HETATM 17 C C15 P1S . . . B 2 28.028 74.923 34.633 1 65.27 ? C15 P1S 0 A 1 HETATM 18 O O3 P1S . . . B 2 25.695 77.744 34.498 1 64.73 ? O3 P1S 0 A 1 HETATM 19 C C16 P1S . . . B 2 24.839 76.749 35.092 1 65.09 ? C16 P1S 0 A 1 HETATM 20 O O4 P1S . . . B 2 25.618 75.534 35.225 1 65.46 ? O4 P1S 0 A 1 HETATM 21 O O5 P1S . . . B 2 31.057 74.548 35.145 1 65.95 ? O5 P1S 0 A 1 HETATM 22 C C17 P1S . . . B 2 32.565 75.103 27.422 1 68.02 ? C17 P1S 0 A 1 HETATM 23 O O6 P1S . . . B 2 33.777 74.32 27.335 1 68.24 ? O6 P1S 0 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #