data_1ZGJ # _model_server_result.job_id LlxnSJ9MX24YOqe67LpVWA _model_server_result.datetime_utc '2024-11-24 14:07:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3994}' # _entry.id 1ZGJ # _exptl.entry_id 1ZGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZGJ _cell.length_a 71.786 _cell.length_b 71.786 _cell.length_c 188.697 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_575 x,-y+2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 143.572 94.3485 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 318 n n N HN1 SAH sing 319 n n N HN2 SAH sing 320 n n CA CB SAH sing 321 n n CA C SAH sing 322 n n CA HA SAH sing 323 n n CB CG SAH sing 324 n n CB HB1 SAH sing 325 n n CB HB2 SAH sing 326 n n CG SD SAH sing 327 n n CG HG1 SAH sing 328 n n CG HG2 SAH sing 329 n n SD C5' SAH sing 330 n n C O SAH doub 331 n n C OXT SAH sing 332 n n OXT HXT SAH sing 333 n n C5' C4' SAH sing 334 n n C5' "H5'1" SAH sing 335 n n C5' "H5'2" SAH sing 336 n n C4' O4' SAH sing 337 n n C4' C3' SAH sing 338 n n C4' H4' SAH sing 339 n n O4' C1' SAH sing 340 n n C3' O3' SAH sing 341 n n C3' C2' SAH sing 342 n n C3' H3' SAH sing 343 n n O3' HO3' SAH sing 344 n n C2' O2' SAH sing 345 n n C2' C1' SAH sing 346 n n C2' H2' SAH sing 347 n n O2' HO2' SAH sing 348 n n C1' N9 SAH sing 349 n n C1' H1' SAH sing 350 n n N9 C8 SAH sing 351 n y N9 C4 SAH sing 352 n y C8 N7 SAH doub 353 n y C8 H8 SAH sing 354 n n N7 C5 SAH sing 355 n y C5 C6 SAH sing 356 n y C5 C4 SAH doub 357 n y C6 N6 SAH sing 358 n n C6 N1 SAH doub 359 n y N6 HN61 SAH sing 360 n n N6 HN62 SAH sing 361 n n N1 C2 SAH sing 362 n y C2 N3 SAH doub 363 n y C2 H2 SAH sing 364 n n N3 C4 SAH sing 365 n y # _atom_sites.entry_id 1ZGJ _atom_sites.fract_transf_matrix[1][1] 0.01393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P1S A 1 0 0 P1S PIS . C 3 SAH A 1 3994 3994 SAH SAH . D 4 HOH A 1 3995 1 HOH HOH . D 4 HOH A 2 3996 2 HOH HOH . D 4 HOH A 3 3997 3 HOH HOH . D 4 HOH A 4 3998 4 HOH HOH . D 4 HOH A 5 3999 5 HOH HOH . D 4 HOH A 6 4000 6 HOH HOH . D 4 HOH A 7 4001 7 HOH HOH . D 4 HOH A 8 4002 8 HOH HOH . D 4 HOH A 9 4003 9 HOH HOH . D 4 HOH A 10 4004 10 HOH HOH . D 4 HOH A 11 4005 11 HOH HOH . D 4 HOH A 12 4006 12 HOH HOH . D 4 HOH A 13 4007 13 HOH HOH . D 4 HOH A 14 4008 14 HOH HOH . D 4 HOH A 15 4009 15 HOH HOH . D 4 HOH A 16 4010 16 HOH HOH . D 4 HOH A 17 4011 17 HOH HOH . D 4 HOH A 18 4012 18 HOH HOH . D 4 HOH A 19 4013 19 HOH HOH . D 4 HOH A 20 4014 20 HOH HOH . D 4 HOH A 21 4015 21 HOH HOH . D 4 HOH A 22 4016 22 HOH HOH . D 4 HOH A 23 4017 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 35.085 76.269 16.259 1 36.14 ? N SAH 3994 A 1 HETATM 2 C CA SAH . . . C 3 33.859 76.434 17.153 1 36.87 ? CA SAH 3994 A 1 HETATM 3 C CB SAH . . . C 3 33.223 75.209 17.69 1 38.72 ? CB SAH 3994 A 1 HETATM 4 C CG SAH . . . C 3 32.795 74.15 16.727 1 40.7 ? CG SAH 3994 A 1 HETATM 5 S SD SAH . . . C 3 31.089 73.64 17.179 1 45.47 ? SD SAH 3994 A 1 HETATM 6 C C SAH . . . C 3 34.257 77.382 18.352 1 36.6 ? C SAH 3994 A 1 HETATM 7 O O SAH . . . C 3 35.412 77.831 18.424 1 36.78 ? O SAH 3994 A 1 HETATM 8 O OXT SAH . . . C 3 33.326 77.627 19.201 1 38.1 ? OXT SAH 3994 A 1 HETATM 9 C C5' SAH . . . C 3 30.972 72.32 16.088 1 38.83 ? C5' SAH 3994 A 1 HETATM 10 C C4' SAH . . . C 3 30.679 72.895 14.639 1 35.74 ? C4' SAH 3994 A 1 HETATM 11 O O4' SAH . . . C 3 30.653 71.718 13.887 1 34.17 ? O4' SAH 3994 A 1 HETATM 12 C C3' SAH . . . C 3 29.314 73.498 14.403 1 34.69 ? C3' SAH 3994 A 1 HETATM 13 O O3' SAH . . . C 3 29.408 74.871 14.035 1 34.46 ? O3' SAH 3994 A 1 HETATM 14 C C2' SAH . . . C 3 28.726 72.569 13.283 1 33.32 ? C2' SAH 3994 A 1 HETATM 15 O O2' SAH . . . C 3 27.867 73.27 12.403 1 33.95 ? O2' SAH 3994 A 1 HETATM 16 C C1' SAH . . . C 3 29.998 72.007 12.642 1 32.29 ? C1' SAH 3994 A 1 HETATM 17 N N9 SAH . . . C 3 29.912 70.852 11.995 1 32.06 ? N9 SAH 3994 A 1 HETATM 18 C C8 SAH . . . C 3 29.214 69.678 12.231 1 31.46 ? C8 SAH 3994 A 1 HETATM 19 N N7 SAH . . . C 3 29.398 68.749 11.356 1 32.02 ? N7 SAH 3994 A 1 HETATM 20 C C5 SAH . . . C 3 30.304 69.319 10.428 1 31.67 ? C5 SAH 3994 A 1 HETATM 21 C C6 SAH . . . C 3 30.893 68.778 9.232 1 32.09 ? C6 SAH 3994 A 1 HETATM 22 N N6 SAH . . . C 3 30.647 67.537 8.779 1 30.42 ? N6 SAH 3994 A 1 HETATM 23 N N1 SAH . . . C 3 31.749 69.64 8.569 1 30.93 ? N1 SAH 3994 A 1 HETATM 24 C C2 SAH . . . C 3 32.024 70.907 9 1 31.27 ? C2 SAH 3994 A 1 HETATM 25 N N3 SAH . . . C 3 31.476 71.456 10.143 1 32.4 ? N3 SAH 3994 A 1 HETATM 26 C C4 SAH . . . C 3 30.628 70.603 10.801 1 31.69 ? C4 SAH 3994 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #