data_1ZH8 # _model_server_result.job_id oesiwHg2IpL6W7loNxN_wQ _model_server_result.datetime_utc '2024-11-13 00:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 1ZH8 # _exptl.entry_id 1ZH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.88 _cell.angle_gamma 90 _cell.entry_id 1ZH8 _cell.length_a 64.849 _cell.length_b 63.088 _cell.length_c 101.172 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 63 A LYS 51 1_555 A N MSE 64 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 64 A MSE 52 1_555 A N VAL 65 A VAL 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C PHE 165 A PHE 153 1_555 A N MSE 166 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 166 A MSE 154 1_555 A N ASN 167 A ASN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C GLY 173 A GLY 161 1_555 A N MSE 174 A MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 174 A MSE 162 1_555 A N ASP 175 A ASP 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C ALA 206 A ALA 194 1_555 A N MSE 207 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 207 A MSE 195 1_555 A N ARG 208 A ARG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C GLY 230 A GLY 218 1_555 A N MSE 231 A MSE 219 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C GLY 230 A GLY 218 1_555 A N MSE 231 A MSE 219 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C MSE 231 A MSE 219 1_555 A N ASP 232 A ASP 220 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 231 A MSE 219 1_555 A N ASP 232 A ASP 220 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 A C GLU 282 A GLU 270 1_555 A N MSE 283 A MSE 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 A C MSE 283 A MSE 271 1_555 A N LYS 284 A LYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 C NA NA . A NA 329 1_555 A O SER 225 A SER 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 C NA NA . A NA 329 1_555 A O GLY 230 A GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc3 C NA NA . A NA 329 1_555 A O LEU 228 A LEU 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc4 C NA NA . A NA 329 1_555 A OD2 ASP 232 A ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc5 C NA NA . A NA 329 1_555 A OD1 ASP 223 A ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? covale ? covale15 B C LYS 63 B LYS 51 1_555 B N MSE 64 B MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 64 B MSE 52 1_555 B N VAL 65 B VAL 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 B C PHE 165 B PHE 153 1_555 B N MSE 166 B MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 B C MSE 166 B MSE 154 1_555 B N ASN 167 B ASN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 B C GLY 173 B GLY 161 1_555 B N MSE 174 B MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 B C MSE 174 B MSE 162 1_555 B N ASP 175 B ASP 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale21 B C ALA 206 B ALA 194 1_555 B N MSE 207 B MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale22 B C MSE 207 B MSE 195 1_555 B N ARG 208 B ARG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale23 B C GLY 230 B GLY 218 1_555 B N MSE 231 B MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 B C MSE 231 B MSE 219 1_555 B N ASP 232 B ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale25 B C GLU 282 B GLU 270 1_555 B N MSE 283 B MSE 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale26 B C MSE 283 B MSE 271 1_555 B N LYS 284 B LYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc6 J NA NA . B NA 329 1_555 B OD1 ASP 223 B ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 J NA NA . B NA 329 1_555 B O LEU 228 B LEU 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc8 J NA NA . B NA 329 1_555 B O GLY 230 B GLY 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 J NA NA . B NA 329 1_555 B O SER 225 B SER 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc10 B OD2 ASP 232 B ASP 220 1_555 J NA NA . B NA 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 1ZH8 _atom_sites.fract_transf_matrix[1][1] 0.01542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0041 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 329 1 NA NA . D 3 NAP A 1 400 400 NAP NAP . E 4 EDO A 1 401 3 EDO EDO . F 4 EDO A 1 402 4 EDO EDO . G 4 EDO A 1 403 5 EDO EDO . H 4 EDO A 1 404 6 EDO EDO . I 4 EDO A 1 405 7 EDO EDO . J 2 NA B 1 329 2 NA NA . K 3 NAP B 1 400 400 NAP NAP . L 5 HOH A 1 406 8 HOH HOH . L 5 HOH A 2 407 9 HOH HOH . L 5 HOH A 3 408 10 HOH HOH . L 5 HOH A 4 409 11 HOH HOH . L 5 HOH A 5 410 12 HOH HOH . L 5 HOH A 6 411 13 HOH HOH . L 5 HOH A 7 412 14 HOH HOH . L 5 HOH A 8 413 23 HOH HOH . L 5 HOH A 9 414 24 HOH HOH . L 5 HOH A 10 415 25 HOH HOH . L 5 HOH A 11 416 26 HOH HOH . L 5 HOH A 12 417 27 HOH HOH . L 5 HOH A 13 418 28 HOH HOH . L 5 HOH A 14 419 29 HOH HOH . L 5 HOH A 15 420 30 HOH HOH . L 5 HOH A 16 421 31 HOH HOH . L 5 HOH A 17 422 32 HOH HOH . L 5 HOH A 18 423 39 HOH HOH . L 5 HOH A 19 424 40 HOH HOH . L 5 HOH A 20 425 41 HOH HOH . L 5 HOH A 21 426 43 HOH HOH . L 5 HOH A 22 427 46 HOH HOH . L 5 HOH A 23 428 47 HOH HOH . L 5 HOH A 24 429 48 HOH HOH . L 5 HOH A 25 430 50 HOH HOH . L 5 HOH A 26 431 51 HOH HOH . L 5 HOH A 27 432 52 HOH HOH . L 5 HOH A 28 433 53 HOH HOH . L 5 HOH A 29 434 54 HOH HOH . L 5 HOH A 30 435 56 HOH HOH . L 5 HOH A 31 436 58 HOH HOH . L 5 HOH A 32 437 61 HOH HOH . L 5 HOH A 33 438 62 HOH HOH . L 5 HOH A 34 439 63 HOH HOH . L 5 HOH A 35 440 64 HOH HOH . L 5 HOH A 36 441 65 HOH HOH . L 5 HOH A 37 442 66 HOH HOH . L 5 HOH A 38 443 68 HOH HOH . L 5 HOH A 39 444 69 HOH HOH . L 5 HOH A 40 445 70 HOH HOH . L 5 HOH A 41 446 72 HOH HOH . L 5 HOH A 42 447 73 HOH HOH . L 5 HOH A 43 448 74 HOH HOH . L 5 HOH A 44 449 75 HOH HOH . L 5 HOH A 45 450 76 HOH HOH . L 5 HOH A 46 451 77 HOH HOH . L 5 HOH A 47 452 79 HOH HOH . L 5 HOH A 48 453 80 HOH HOH . L 5 HOH A 49 454 81 HOH HOH . L 5 HOH A 50 455 82 HOH HOH . L 5 HOH A 51 456 83 HOH HOH . L 5 HOH A 52 457 84 HOH HOH . L 5 HOH A 53 458 86 HOH HOH . L 5 HOH A 54 459 88 HOH HOH . L 5 HOH A 55 460 90 HOH HOH . L 5 HOH A 56 461 92 HOH HOH . L 5 HOH A 57 462 93 HOH HOH . L 5 HOH A 58 463 95 HOH HOH . L 5 HOH A 59 464 96 HOH HOH . L 5 HOH A 60 465 97 HOH HOH . L 5 HOH A 61 466 98 HOH HOH . L 5 HOH A 62 467 99 HOH HOH . L 5 HOH A 63 468 101 HOH HOH . L 5 HOH A 64 469 105 HOH HOH . L 5 HOH A 65 470 106 HOH HOH . L 5 HOH A 66 471 107 HOH HOH . L 5 HOH A 67 472 109 HOH HOH . L 5 HOH A 68 473 110 HOH HOH . L 5 HOH A 69 474 111 HOH HOH . L 5 HOH A 70 475 112 HOH HOH . L 5 HOH A 71 476 113 HOH HOH . L 5 HOH A 72 477 114 HOH HOH . L 5 HOH A 73 478 115 HOH HOH . L 5 HOH A 74 479 116 HOH HOH . L 5 HOH A 75 480 117 HOH HOH . L 5 HOH A 76 481 118 HOH HOH . L 5 HOH A 77 482 119 HOH HOH . L 5 HOH A 78 483 120 HOH HOH . L 5 HOH A 79 484 129 HOH HOH . L 5 HOH A 80 485 130 HOH HOH . L 5 HOH A 81 486 131 HOH HOH . L 5 HOH A 82 487 132 HOH HOH . L 5 HOH A 83 488 133 HOH HOH . L 5 HOH A 84 489 134 HOH HOH . L 5 HOH A 85 490 139 HOH HOH . L 5 HOH A 86 491 140 HOH HOH . L 5 HOH A 87 492 141 HOH HOH . L 5 HOH A 88 493 142 HOH HOH . L 5 HOH A 89 494 143 HOH HOH . L 5 HOH A 90 495 144 HOH HOH . L 5 HOH A 91 496 145 HOH HOH . L 5 HOH A 92 497 146 HOH HOH . L 5 HOH A 93 498 149 HOH HOH . L 5 HOH A 94 499 150 HOH HOH . L 5 HOH A 95 500 151 HOH HOH . L 5 HOH A 96 501 152 HOH HOH . L 5 HOH A 97 502 153 HOH HOH . M 5 HOH B 1 401 15 HOH HOH . M 5 HOH B 2 402 16 HOH HOH . M 5 HOH B 3 403 17 HOH HOH . M 5 HOH B 4 404 18 HOH HOH . M 5 HOH B 5 405 19 HOH HOH . M 5 HOH B 6 406 20 HOH HOH . M 5 HOH B 7 407 21 HOH HOH . M 5 HOH B 8 408 22 HOH HOH . M 5 HOH B 9 409 33 HOH HOH . M 5 HOH B 10 410 34 HOH HOH . M 5 HOH B 11 411 35 HOH HOH . M 5 HOH B 12 412 36 HOH HOH . M 5 HOH B 13 413 37 HOH HOH . M 5 HOH B 14 414 38 HOH HOH . M 5 HOH B 15 415 42 HOH HOH . M 5 HOH B 16 416 44 HOH HOH . M 5 HOH B 17 417 45 HOH HOH . M 5 HOH B 18 418 49 HOH HOH . M 5 HOH B 19 419 55 HOH HOH . M 5 HOH B 20 420 57 HOH HOH . M 5 HOH B 21 421 59 HOH HOH . M 5 HOH B 22 422 60 HOH HOH . M 5 HOH B 23 423 67 HOH HOH . M 5 HOH B 24 424 71 HOH HOH . M 5 HOH B 25 425 78 HOH HOH . M 5 HOH B 26 426 85 HOH HOH . M 5 HOH B 27 427 87 HOH HOH . M 5 HOH B 28 428 89 HOH HOH . M 5 HOH B 29 429 91 HOH HOH . M 5 HOH B 30 430 94 HOH HOH . M 5 HOH B 31 431 100 HOH HOH . M 5 HOH B 32 432 102 HOH HOH . M 5 HOH B 33 433 103 HOH HOH . M 5 HOH B 34 434 104 HOH HOH . M 5 HOH B 35 435 108 HOH HOH . M 5 HOH B 36 436 121 HOH HOH . M 5 HOH B 37 437 122 HOH HOH . M 5 HOH B 38 438 123 HOH HOH . M 5 HOH B 39 439 124 HOH HOH . M 5 HOH B 40 440 125 HOH HOH . M 5 HOH B 41 441 126 HOH HOH . M 5 HOH B 42 442 127 HOH HOH . M 5 HOH B 43 443 128 HOH HOH . M 5 HOH B 44 444 135 HOH HOH . M 5 HOH B 45 445 136 HOH HOH . M 5 HOH B 46 446 137 HOH HOH . M 5 HOH B 47 447 138 HOH HOH . M 5 HOH B 48 448 147 HOH HOH . M 5 HOH B 49 449 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 61.076 26.926 -18.3 1 42.72 ? C1 EDO 403 A 1 HETATM 2 O O1 EDO . . . G 4 60.414 25.837 -18.959 1 39.56 ? O1 EDO 403 A 1 HETATM 3 C C2 EDO . . . G 4 61.521 26.502 -16.9 1 39.47 ? C2 EDO 403 A 1 HETATM 4 O O2 EDO . . . G 4 61.944 25.128 -16.88 1 36.28 ? O2 EDO 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #