data_1ZHF # _model_server_result.job_id 9gQc7j1mxpb40kd8meV1ug _model_server_result.datetime_utc '2024-11-17 22:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3994}' # _entry.id 1ZHF # _exptl.entry_id 1ZHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZHF _cell.length_a 71.355 _cell.length_b 71.355 _cell.length_c 188.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_576 x,-y+2,-z+3/2 1 0 0 0 -1 0 0 0 -1 0 142.71 283.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1ZHF _atom_sites.fract_transf_matrix[1][1] 0.014014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 3994 3994 SAH SAH . C 3 HOH A 1 3995 1 HOH TIP . C 3 HOH A 2 3996 2 HOH TIP . C 3 HOH A 3 3997 3 HOH TIP . C 3 HOH A 4 3998 4 HOH TIP . C 3 HOH A 5 3999 5 HOH TIP . C 3 HOH A 6 4000 6 HOH TIP . C 3 HOH A 7 4001 7 HOH TIP . C 3 HOH A 8 4002 8 HOH TIP . C 3 HOH A 9 4003 9 HOH TIP . C 3 HOH A 10 4004 10 HOH TIP . C 3 HOH A 11 4005 11 HOH TIP . C 3 HOH A 12 4006 12 HOH TIP . C 3 HOH A 13 4007 13 HOH TIP . C 3 HOH A 14 4008 14 HOH TIP . C 3 HOH A 15 4009 15 HOH TIP . C 3 HOH A 16 4010 16 HOH TIP . C 3 HOH A 17 4011 17 HOH TIP . C 3 HOH A 18 4012 18 HOH TIP . C 3 HOH A 19 4013 19 HOH TIP . C 3 HOH A 20 4014 20 HOH TIP . C 3 HOH A 21 4015 21 HOH TIP . C 3 HOH A 22 4016 22 HOH TIP . C 3 HOH A 23 4017 23 HOH TIP . C 3 HOH A 24 4018 24 HOH TIP . C 3 HOH A 25 4019 25 HOH TIP . C 3 HOH A 26 4020 26 HOH TIP . C 3 HOH A 27 4021 27 HOH TIP . C 3 HOH A 28 4022 28 HOH TIP . C 3 HOH A 29 4023 29 HOH TIP . C 3 HOH A 30 4024 30 HOH TIP . C 3 HOH A 31 4025 31 HOH TIP . C 3 HOH A 32 4026 32 HOH TIP . C 3 HOH A 33 4027 33 HOH TIP . C 3 HOH A 34 4028 34 HOH TIP . C 3 HOH A 35 4029 35 HOH TIP . C 3 HOH A 36 4030 36 HOH TIP . C 3 HOH A 37 4031 37 HOH TIP . C 3 HOH A 38 4032 38 HOH TIP . C 3 HOH A 39 4033 39 HOH TIP . C 3 HOH A 40 4034 40 HOH TIP . C 3 HOH A 41 4035 41 HOH TIP . C 3 HOH A 42 4036 42 HOH TIP . C 3 HOH A 43 4037 43 HOH TIP . C 3 HOH A 44 4038 44 HOH TIP . C 3 HOH A 45 4039 45 HOH TIP . C 3 HOH A 46 4040 46 HOH TIP . C 3 HOH A 47 4041 47 HOH TIP . C 3 HOH A 48 4042 48 HOH TIP . C 3 HOH A 49 4043 49 HOH TIP . C 3 HOH A 50 4044 50 HOH TIP . C 3 HOH A 51 4045 51 HOH TIP . C 3 HOH A 52 4046 52 HOH TIP . C 3 HOH A 53 4047 53 HOH TIP . C 3 HOH A 54 4048 54 HOH TIP . C 3 HOH A 55 4049 55 HOH TIP . C 3 HOH A 56 4050 56 HOH TIP . C 3 HOH A 57 4051 57 HOH TIP . C 3 HOH A 58 4052 58 HOH TIP . C 3 HOH A 59 4053 59 HOH TIP . C 3 HOH A 60 4054 60 HOH TIP . C 3 HOH A 61 4055 61 HOH TIP . C 3 HOH A 62 4056 62 HOH TIP . C 3 HOH A 63 4057 63 HOH TIP . C 3 HOH A 64 4058 64 HOH TIP . C 3 HOH A 65 4059 65 HOH TIP . C 3 HOH A 66 4060 66 HOH TIP . C 3 HOH A 67 4061 67 HOH TIP . C 3 HOH A 68 4062 68 HOH TIP . C 3 HOH A 69 4063 69 HOH TIP . C 3 HOH A 70 4064 70 HOH TIP . C 3 HOH A 71 4065 71 HOH TIP . C 3 HOH A 72 4066 72 HOH TIP . C 3 HOH A 73 4067 73 HOH TIP . C 3 HOH A 74 4068 74 HOH TIP . C 3 HOH A 75 4069 75 HOH TIP . C 3 HOH A 76 4070 76 HOH TIP . C 3 HOH A 77 4071 77 HOH TIP . C 3 HOH A 78 4072 78 HOH TIP . C 3 HOH A 79 4073 79 HOH TIP . C 3 HOH A 80 4074 80 HOH TIP . C 3 HOH A 81 4075 81 HOH TIP . C 3 HOH A 82 4076 82 HOH TIP . C 3 HOH A 83 4077 83 HOH TIP . C 3 HOH A 84 4078 84 HOH TIP . C 3 HOH A 85 4079 85 HOH TIP . C 3 HOH A 86 4080 86 HOH TIP . C 3 HOH A 87 4081 87 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 34.864 75.961 110.714 1 35.89 ? N SAH 3994 A 1 HETATM 2 C CA SAH . . . B 2 33.594 75.981 111.559 1 36.03 ? CA SAH 3994 A 1 HETATM 3 C CB SAH . . . B 2 33.066 74.696 112.069 1 38.55 ? CB SAH 3994 A 1 HETATM 4 C CG SAH . . . B 2 32.763 73.584 111.107 1 41.11 ? CG SAH 3994 A 1 HETATM 5 S SD SAH . . . B 2 31.121 72.919 111.593 1 46.22 ? SD SAH 3994 A 1 HETATM 6 C C SAH . . . B 2 33.832 76.958 112.777 1 35.07 ? C SAH 3994 A 1 HETATM 7 O O SAH . . . B 2 34.922 77.541 112.901 1 34.89 ? O SAH 3994 A 1 HETATM 8 O OXT SAH . . . B 2 32.838 77.081 113.588 1 36.07 ? OXT SAH 3994 A 1 HETATM 9 C C5' SAH . . . B 2 30.99 71.616 110.479 1 40.37 ? C5' SAH 3994 A 1 HETATM 10 C C4' SAH . . . B 2 30.614 72.19 109.046 1 39.07 ? C4' SAH 3994 A 1 HETATM 11 O O4' SAH . . . B 2 30.562 71.009 108.293 1 39.55 ? O4' SAH 3994 A 1 HETATM 12 C C3' SAH . . . B 2 29.232 72.786 108.863 1 38.27 ? C3' SAH 3994 A 1 HETATM 13 O O3' SAH . . . B 2 29.298 74.18 108.563 1 37.96 ? O3' SAH 3994 A 1 HETATM 14 C C2' SAH . . . B 2 28.626 71.891 107.706 1 37.43 ? C2' SAH 3994 A 1 HETATM 15 O O2' SAH . . . B 2 27.793 72.619 106.82 1 37.56 ? O2' SAH 3994 A 1 HETATM 16 C C1' SAH . . . B 2 29.874 71.312 107.061 1 36.33 ? C1' SAH 3994 A 1 HETATM 17 N N9 SAH . . . B 2 29.752 70.175 106.387 1 34.49 ? N9 SAH 3994 A 1 HETATM 18 C C8 SAH . . . B 2 29.048 68.994 106.596 1 33.14 ? C8 SAH 3994 A 1 HETATM 19 N N7 SAH . . . B 2 29.205 68.098 105.681 1 33.28 ? N7 SAH 3994 A 1 HETATM 20 C C5 SAH . . . B 2 30.101 68.709 104.749 1 33.76 ? C5 SAH 3994 A 1 HETATM 21 C C6 SAH . . . B 2 30.667 68.233 103.513 1 33.6 ? C6 SAH 3994 A 1 HETATM 22 N N6 SAH . . . B 2 30.412 67.034 103.004 1 33.96 ? N6 SAH 3994 A 1 HETATM 23 N N1 SAH . . . B 2 31.511 69.118 102.875 1 34 ? N1 SAH 3994 A 1 HETATM 24 C C2 SAH . . . B 2 31.797 70.358 103.364 1 33.6 ? C2 SAH 3994 A 1 HETATM 25 N N3 SAH . . . B 2 31.274 70.849 104.54 1 32.22 ? N3 SAH 3994 A 1 HETATM 26 C C4 SAH . . . B 2 30.441 69.972 105.172 1 32.88 ? C4 SAH 3994 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #